data_D7P # _chem_comp.id D7P _chem_comp.name "D-PHENYLALANYL-N~5~-[(2,2-DIHYDROXYHYDRAZINO)(IMINO)METHYL]-D-ORNITHINAMIDE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H25 N7 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "D-PHENYLALANINE-D-NITROARGININE AMIDE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-12-18 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 367.404 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D7P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1RS7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D7P "N1'" "N1'" N 0 1 N N N 6.488 2.173 22.705 -0.571 -4.866 -0.591 "N1'" D7P 1 D7P "N'" "N'" N 0 1 N N N 4.861 2.220 28.276 -3.588 0.496 2.175 "N'" D7P 2 D7P "CA'" "CA'" C 0 1 N N R 5.253 2.965 27.057 -2.987 0.214 0.865 "CA'" D7P 3 D7P "C'" "C'" C 0 1 N N N 5.948 1.972 26.095 -2.156 -1.040 0.954 "C'" D7P 4 D7P "O'" "O'" O 0 1 N N N 5.452 0.870 25.851 -2.344 -1.830 1.855 "O'" D7P 5 D7P "CB'" "CB'" C 0 1 N N N 3.986 3.603 26.433 -4.094 0.019 -0.173 "CB'" D7P 6 D7P "CG'" "CG'" C 0 1 Y N N 3.161 4.476 27.391 -4.849 1.312 -0.351 "CG'" D7P 7 D7P CD1 CD1 C 0 1 Y N N 3.730 5.642 27.964 -4.437 2.227 -1.301 CD1 D7P 8 D7P CE1 CE1 C 0 1 Y N N 2.977 6.449 28.845 -5.129 3.413 -1.464 CE1 D7P 9 D7P "CZ'" "CZ'" C 0 1 Y N N 1.645 6.092 29.163 -6.233 3.682 -0.677 "CZ'" D7P 10 D7P CE2 CE2 C 0 1 Y N N 1.065 4.928 28.597 -6.645 2.767 0.272 CE2 D7P 11 D7P CD2 CD2 C 0 1 Y N N 1.824 4.118 27.714 -5.956 1.579 0.433 CD2 D7P 12 D7P N N N 0 1 N N N 7.115 2.347 25.543 -1.203 -1.284 0.032 N D7P 13 D7P CA CA C 0 1 N N R 7.890 1.456 24.602 -0.395 -2.503 0.119 CA D7P 14 D7P C C C 0 1 N N N 7.129 1.188 23.306 -1.127 -3.639 -0.548 C D7P 15 D7P O O O 0 1 N N N 7.057 0.088 22.823 -2.216 -3.449 -1.047 O D7P 16 D7P CB CB C 0 1 N N N 9.222 2.110 24.417 0.945 -2.277 -0.584 CB D7P 17 D7P CG CG C 0 1 N N N 10.344 1.093 24.207 1.742 -1.209 0.169 CG D7P 18 D7P CD CD C 0 1 N N N 11.663 1.802 23.996 3.082 -0.983 -0.534 CD D7P 19 D7P NE NE N 0 1 N N N 12.776 0.848 24.057 3.845 0.039 0.186 NE D7P 20 D7P CZ CZ C 0 1 N N N 13.785 0.702 23.233 5.090 0.412 -0.262 CZ D7P 21 D7P NH1 NH1 N 0 1 N N N 13.896 1.489 22.177 5.806 1.371 0.414 NH1 D7P 22 D7P NH2 NH2 N 0 1 N N N 14.669 -0.253 23.521 5.592 -0.145 -1.329 NH2 D7P 23 D7P NO NO N 0 1 N N N 14.797 1.479 21.176 7.043 1.741 -0.032 NO D7P 24 D7P O2 O2 O 0 1 N N N 14.557 2.214 20.150 7.017 3.196 -0.184 O2 D7P 25 D7P O3 O3 O 0 1 N N N 15.871 0.786 21.214 7.985 1.448 1.048 O3 D7P 26 D7P "H1'1" "1H1'" H 0 0 N N N 5.980 1.994 21.839 0.301 -5.018 -0.193 "H1'1" D7P 27 D7P "H1'2" "2H1'" H 0 0 N N N 6.549 3.105 23.114 -1.042 -5.597 -1.021 "H1'2" D7P 28 D7P "HN'1" "1HN'" H 0 0 N N N 5.645 1.732 28.710 -4.214 1.277 2.045 "HN'1" D7P 29 D7P "HN'2" "2HN'" H 0 0 N N N 4.403 2.875 28.910 -4.163 -0.300 2.408 "HN'2" D7P 30 D7P "HA'" "HA'" H 0 1 N N N 5.967 3.791 27.284 -2.353 1.049 0.568 "HA'" D7P 31 D7P "HB'1" "1HB'" H 0 0 N N N 3.342 2.815 25.979 -3.652 -0.278 -1.124 "HB'1" D7P 32 D7P "HB'2" "2HB'" H 0 0 N N N 4.257 4.183 25.520 -4.779 -0.757 0.168 "HB'2" D7P 33 D7P HD1 HD1 H 0 1 N N N 4.769 5.924 27.722 -3.574 2.016 -1.916 HD1 D7P 34 D7P HE1 HE1 H 0 1 N N N 3.428 7.355 29.283 -4.806 4.128 -2.206 HE1 D7P 35 D7P "HZ'" "HZ'" H 0 1 N N N 1.058 6.722 29.853 -6.773 4.609 -0.804 "HZ'" D7P 36 D7P HE2 HE2 H 0 1 N N N 0.026 4.653 28.843 -7.507 2.978 0.887 HE2 D7P 37 D7P HD2 HD2 H 0 1 N N N 1.375 3.210 27.279 -6.278 0.864 1.175 HD2 D7P 38 D7P HN HN H 0 1 N N N 7.405 3.282 25.830 -1.052 -0.652 -0.688 HN D7P 39 D7P HA HA H 0 1 N N N 8.035 0.433 25.022 -0.219 -2.749 1.166 HA D7P 40 D7P HB1 1HB H 0 1 N N N 9.454 2.797 25.264 1.510 -3.209 -0.598 HB1 D7P 41 D7P HB2 2HB H 0 1 N N N 9.193 2.855 23.588 0.768 -1.944 -1.607 HB2 D7P 42 D7P HG1 1HG H 0 1 N N N 10.114 0.386 23.376 1.177 -0.277 0.182 HG1 D7P 43 D7P HG2 2HG H 0 1 N N N 10.398 0.355 25.041 1.919 -1.542 1.191 HG2 D7P 44 D7P HD1A 1HD H 0 0 N N N 11.800 2.645 24.713 3.647 -1.916 -0.548 HD1A D7P 45 D7P HD2A 2HD H 0 0 N N N 11.671 2.388 23.047 2.905 -0.651 -1.557 HD2A D7P 46 D7P HNE HNE H 0 1 N N N 12.340 -0.072 24.117 3.472 0.453 0.980 HNE D7P 47 D7P HH1 HH1 H 0 1 N N N 13.933 2.435 22.556 5.433 1.785 1.207 HH1 D7P 48 D7P HH2 HH2 H 0 1 N N N 14.374 -1.204 23.301 6.470 0.118 -1.646 HH2 D7P 49 D7P HO2 HO2 H 0 1 N N N 15.193 2.207 19.444 7.893 3.459 -0.500 HO2 D7P 50 D7P HO3 HO3 H 0 1 N N N 16.507 0.779 20.508 8.861 1.709 0.734 HO3 D7P 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D7P "N1'" C SING N N 1 D7P "N1'" "H1'1" SING N N 2 D7P "N1'" "H1'2" SING N N 3 D7P "N'" "CA'" SING N N 4 D7P "N'" "HN'1" SING N N 5 D7P "N'" "HN'2" SING N N 6 D7P "CA'" "C'" SING N N 7 D7P "CA'" "CB'" SING N N 8 D7P "CA'" "HA'" SING N N 9 D7P "C'" "O'" DOUB N N 10 D7P "C'" N SING N N 11 D7P "CB'" "CG'" SING N N 12 D7P "CB'" "HB'1" SING N N 13 D7P "CB'" "HB'2" SING N N 14 D7P "CG'" CD1 DOUB Y N 15 D7P "CG'" CD2 SING Y N 16 D7P CD1 CE1 SING Y N 17 D7P CD1 HD1 SING N N 18 D7P CE1 "CZ'" DOUB Y N 19 D7P CE1 HE1 SING N N 20 D7P "CZ'" CE2 SING Y N 21 D7P "CZ'" "HZ'" SING N N 22 D7P CE2 CD2 DOUB Y N 23 D7P CE2 HE2 SING N N 24 D7P CD2 HD2 SING N N 25 D7P N CA SING N N 26 D7P N HN SING N N 27 D7P CA C SING N N 28 D7P CA CB SING N N 29 D7P CA HA SING N N 30 D7P C O DOUB N N 31 D7P CB CG SING N N 32 D7P CB HB1 SING N N 33 D7P CB HB2 SING N N 34 D7P CG CD SING N N 35 D7P CG HG1 SING N N 36 D7P CG HG2 SING N N 37 D7P CD NE SING N N 38 D7P CD HD1A SING N N 39 D7P CD HD2A SING N N 40 D7P NE CZ SING N N 41 D7P NE HNE SING N N 42 D7P CZ NH1 SING N N 43 D7P CZ NH2 DOUB N N 44 D7P NH1 NO SING N N 45 D7P NH1 HH1 SING N N 46 D7P NH2 HH2 SING N N 47 D7P NO O2 SING N N 48 D7P NO O3 SING N N 49 D7P O2 HO2 SING N N 50 D7P O3 HO3 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D7P SMILES ACDLabs 10.04 "O=C(N)C(NC(=O)C(N)Cc1ccccc1)CCCNC(=[N@H])NN(O)O" D7P SMILES_CANONICAL CACTVS 3.341 "N[C@H](Cc1ccccc1)C(=O)N[C@H](CCCNC(=N)NN(O)O)C(N)=O" D7P SMILES CACTVS 3.341 "N[CH](Cc1ccccc1)C(=O)N[CH](CCCNC(=N)NN(O)O)C(N)=O" D7P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)C[C@H](C(=O)N[C@H](CCCNC(=N)NN(O)O)C(=O)N)N" D7P SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)CC(C(=O)NC(CCCNC(=N)NN(O)O)C(=O)N)N" D7P InChI InChI 1.03 "InChI=1S/C15H25N7O4/c16-11(9-10-5-2-1-3-6-10)14(24)20-12(13(17)23)7-4-8-19-15(18)21-22(25)26/h1-3,5-6,11-12,25-26H,4,7-9,16H2,(H2,17,23)(H,20,24)(H3,18,19,21)/t11-,12-/m1/s1" D7P InChIKey InChI 1.03 XHGCEQHFMHULSW-VXGBXAGGSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D7P "SYSTEMATIC NAME" ACDLabs 10.04 "D-phenylalanyl-N~5~-[(E)-(2,2-dihydroxyhydrazino)(imino)methyl]-D-ornithinamide" D7P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-2-[[(2R)-2-amino-3-phenyl-propanoyl]amino]-5-[[N-(dihydroxyamino)carbamimidoyl]amino]pentanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D7P "Create component" 2003-12-18 RCSB D7P "Modify descriptor" 2011-06-04 RCSB D7P "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id D7P _pdbx_chem_comp_synonyms.name "D-PHENYLALANINE-D-NITROARGININE AMIDE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##