data_D7S # _chem_comp.id D7S _chem_comp.name "(5beta,14beta,17alpha,25S)-3-oxocholest-7-en-26-oic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H42 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(25S)-delta7-dafachronic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-11-18 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 414.621 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D7S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3UP0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D7S O3 O3 O 0 1 N N N -0.576 -18.236 36.286 -9.496 0.303 -1.206 O3 D7S 1 D7S C27 C27 C 0 1 N N N -0.326 -19.090 35.397 -8.424 -0.115 -0.515 C27 D7S 2 D7S O2 O2 O 0 1 N N N -1.271 -19.481 34.614 -8.546 -0.967 0.333 O2 D7S 3 D7S C25 C25 C 0 1 N N S 1.089 -19.632 35.247 -7.068 0.479 -0.795 C25 D7S 4 D7S C26 C26 C 0 1 N N N 1.094 -21.126 35.583 -7.108 1.987 -0.539 C26 D7S 5 D7S C24 C24 C 0 1 N N N 1.650 -19.446 33.848 -6.028 -0.167 0.123 C24 D7S 6 D7S C23 C23 C 0 1 N N N 1.735 -17.969 33.478 -4.634 0.344 -0.247 C23 D7S 7 D7S C22 C22 C 0 1 N N N 2.410 -17.763 32.109 -3.594 -0.302 0.672 C22 D7S 8 D7S C20 C20 C 0 1 N N R 1.588 -18.281 30.916 -2.200 0.209 0.302 C20 D7S 9 D7S C21 C21 C 0 1 N N N 0.211 -17.598 30.874 -2.115 1.710 0.587 C21 D7S 10 D7S C17 C17 C 0 1 N N R 2.358 -18.145 29.593 -1.150 -0.529 1.135 C17 D7S 11 D7S C16 C16 C 0 1 N N N 3.699 -18.912 29.601 -1.194 -2.050 0.835 C16 D7S 12 D7S C15 C15 C 0 1 N N N 3.999 -19.431 28.202 0.234 -2.443 0.360 C15 D7S 13 D7S C14 C14 C 0 1 N N R 2.941 -18.745 27.348 1.110 -1.357 0.990 C14 D7S 14 D7S C8 C8 C 0 1 N N N 2.619 -19.307 25.970 2.425 -1.085 0.312 C8 D7S 15 D7S C7 C7 C 0 1 N N N 3.288 -20.331 25.391 2.874 -1.890 -0.599 C7 D7S 16 D7S C6 C6 C 0 1 N N N 3.009 -20.746 23.972 4.168 -1.662 -1.322 C6 D7S 17 D7S C13 C13 C 0 1 N N R 1.731 -18.621 28.263 0.249 -0.088 0.732 C13 D7S 18 D7S C18 C18 C 0 1 N N N 1.007 -19.967 28.447 0.264 0.233 -0.764 C18 D7S 19 D7S C12 C12 C 0 1 N N N 0.775 -17.652 27.570 0.877 1.056 1.492 C12 D7S 20 D7S C11 C11 C 0 1 N N N 0.371 -18.146 26.174 2.224 1.374 0.819 C11 D7S 21 D7S C9 C9 C 0 1 N N R 1.520 -18.510 25.204 3.147 0.152 0.774 C9 D7S 22 D7S C10 C10 C 0 1 N N S 1.088 -19.108 23.844 4.405 0.451 -0.025 C10 D7S 23 D7S C1 C1 C 0 1 N N N 0.517 -17.967 22.947 5.336 1.311 0.837 C1 D7S 24 D7S C19 C19 C 0 1 N N N 0.076 -20.234 24.030 4.028 1.227 -1.288 C19 D7S 25 D7S C5 C5 C 0 1 N N S 2.313 -19.677 23.123 5.114 -0.836 -0.440 C5 D7S 26 D7S C4 C4 C 0 1 N N N 2.069 -20.120 21.679 6.364 -0.501 -1.267 C4 D7S 27 D7S C3 C3 C 0 1 N N N 1.366 -19.036 20.877 7.222 0.474 -0.497 C3 D7S 28 D7S O1 O1 O 0 1 N N N 1.746 -18.745 19.761 8.398 0.269 -0.316 O1 D7S 29 D7S C2 C2 C 0 1 N N N 0.168 -18.409 21.530 6.561 1.731 0.021 C2 D7S 30 D7S H1 H1 H 0 1 N N N -1.493 -17.991 36.241 -10.344 -0.107 -0.990 H1 D7S 31 D7S H2 H2 H 0 1 N N N 1.743 -19.111 35.961 -6.798 0.294 -1.835 H2 D7S 32 D7S H3 H3 H 0 1 N N N 0.690 -21.276 36.595 -6.127 2.416 -0.743 H3 D7S 33 D7S H4 H4 H 0 1 N N N 0.471 -21.667 34.856 -7.848 2.447 -1.194 H4 D7S 34 D7S H5 H5 H 0 1 N N N 2.125 -21.508 35.540 -7.377 2.171 0.501 H5 D7S 35 D7S H6 H6 H 0 1 N N N 0.995 -19.959 33.128 -6.247 0.092 1.159 H6 D7S 36 D7S H7 H7 H 0 1 N N N 2.658 -19.885 33.805 -6.061 -1.250 0.004 H7 D7S 37 D7S H8 H8 H 0 1 N N N 2.319 -17.442 34.247 -4.415 0.085 -1.282 H8 D7S 38 D7S H9 H9 H 0 1 N N N 0.718 -17.552 33.440 -4.601 1.427 -0.128 H9 D7S 39 D7S H10 H10 H 0 1 N N N 3.375 -18.290 32.118 -3.813 -0.043 1.708 H10 D7S 40 D7S H11 H11 H 0 1 N N N 2.582 -16.686 31.968 -3.628 -1.385 0.553 H11 D7S 41 D7S H12 H12 H 0 1 N N N 1.414 -19.354 31.083 -2.016 0.029 -0.757 H12 D7S 42 D7S H13 H13 H 0 1 N N N -0.293 -17.727 31.843 -1.122 2.074 0.324 H13 D7S 43 D7S H14 H14 H 0 1 N N N 0.340 -16.525 30.668 -2.863 2.235 -0.006 H14 D7S 44 D7S H15 H15 H 0 1 N N N -0.400 -18.053 30.080 -2.299 1.890 1.646 H15 D7S 45 D7S H16 H16 H 0 1 N N N 2.600 -17.079 29.469 -1.314 -0.347 2.197 H16 D7S 46 D7S H17 H17 H 0 1 N N N 3.632 -19.759 30.299 -1.454 -2.602 1.737 H17 D7S 47 D7S H18 H18 H 0 1 N N N 4.505 -18.236 29.921 -1.920 -2.255 0.048 H18 D7S 48 D7S H19 H19 H 0 1 N N N 3.896 -20.525 28.156 0.508 -3.428 0.738 H19 D7S 49 D7S H20 H20 H 0 1 N N N 5.012 -19.144 27.883 0.301 -2.415 -0.727 H20 D7S 50 D7S H21 H21 H 0 1 N N N 3.303 -17.720 27.181 1.242 -1.533 2.057 H21 D7S 51 D7S H22 H22 H 0 1 N N N 4.038 -20.861 25.959 2.291 -2.764 -0.848 H22 D7S 52 D7S H23 H23 H 0 1 N N N 2.367 -21.639 23.995 4.630 -2.622 -1.551 H23 D7S 53 D7S H24 H24 H 0 1 N N N 3.967 -20.996 23.492 3.975 -1.122 -2.250 H24 D7S 54 D7S H25 H25 H 0 1 N N N 0.142 -19.831 29.113 -0.125 -0.619 -1.322 H25 D7S 55 D7S H26 H26 H 0 1 N N N 0.662 -20.334 27.469 -0.360 1.106 -0.954 H26 D7S 56 D7S H27 H27 H 0 1 N N N 1.699 -20.698 28.890 1.286 0.439 -1.081 H27 D7S 57 D7S H28 H28 H 0 1 N N N 1.269 -16.674 27.472 0.227 1.930 1.451 H28 D7S 58 D7S H29 H29 H 0 1 N N N -0.131 -17.545 28.185 1.040 0.766 2.530 H29 D7S 59 D7S H30 H30 H 0 1 N N N -0.226 -17.353 25.700 2.041 1.696 -0.206 H30 D7S 60 D7S H31 H31 H 0 1 N N N -0.251 -19.044 26.306 2.712 2.181 1.364 H31 D7S 61 D7S H32 H32 H 0 1 N N N 1.993 -17.549 24.953 3.463 -0.025 1.802 H32 D7S 62 D7S H33 H33 H 0 1 N N N 1.269 -17.167 22.885 4.801 2.200 1.171 H33 D7S 63 D7S H34 H34 H 0 1 N N N -0.395 -17.577 23.422 5.660 0.737 1.705 H34 D7S 64 D7S H35 H35 H 0 1 N N N 0.512 -21.018 24.666 3.542 2.162 -1.008 H35 D7S 65 D7S H36 H36 H 0 1 N N N -0.831 -19.836 24.509 4.928 1.443 -1.864 H36 D7S 66 D7S H37 H37 H 0 1 N N N -0.183 -20.659 23.049 3.345 0.629 -1.891 H37 D7S 67 D7S H38 H38 H 0 1 N N N 3.028 -18.844 23.057 5.386 -1.413 0.444 H38 D7S 68 D7S H39 H39 H 0 1 N N N 1.443 -21.025 21.683 6.930 -1.413 -1.457 H39 D7S 69 D7S H40 H40 H 0 1 N N N 3.036 -20.345 21.206 6.064 -0.054 -2.215 H40 D7S 70 D7S H41 H41 H 0 1 N N N -0.150 -17.534 20.944 6.268 2.365 -0.816 H41 D7S 71 D7S H42 H42 H 0 1 N N N -0.651 -19.142 21.569 7.252 2.271 0.669 H42 D7S 72 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D7S O1 C3 DOUB N N 1 D7S C3 C2 SING N N 2 D7S C3 C4 SING N N 3 D7S C2 C1 SING N N 4 D7S C4 C5 SING N N 5 D7S C1 C10 SING N N 6 D7S C5 C10 SING N N 7 D7S C5 C6 SING N N 8 D7S C10 C19 SING N N 9 D7S C10 C9 SING N N 10 D7S C6 C7 SING N N 11 D7S C9 C8 SING N N 12 D7S C9 C11 SING N N 13 D7S C7 C8 DOUB N N 14 D7S C8 C14 SING N N 15 D7S C11 C12 SING N N 16 D7S C14 C15 SING N N 17 D7S C14 C13 SING N N 18 D7S C12 C13 SING N N 19 D7S C15 C16 SING N N 20 D7S C13 C18 SING N N 21 D7S C13 C17 SING N N 22 D7S C17 C16 SING N N 23 D7S C17 C20 SING N N 24 D7S C21 C20 SING N N 25 D7S C20 C22 SING N N 26 D7S C22 C23 SING N N 27 D7S C23 C24 SING N N 28 D7S C24 C25 SING N N 29 D7S O2 C27 DOUB N N 30 D7S C25 C27 SING N N 31 D7S C25 C26 SING N N 32 D7S C27 O3 SING N N 33 D7S O3 H1 SING N N 34 D7S C25 H2 SING N N 35 D7S C26 H3 SING N N 36 D7S C26 H4 SING N N 37 D7S C26 H5 SING N N 38 D7S C24 H6 SING N N 39 D7S C24 H7 SING N N 40 D7S C23 H8 SING N N 41 D7S C23 H9 SING N N 42 D7S C22 H10 SING N N 43 D7S C22 H11 SING N N 44 D7S C20 H12 SING N N 45 D7S C21 H13 SING N N 46 D7S C21 H14 SING N N 47 D7S C21 H15 SING N N 48 D7S C17 H16 SING N N 49 D7S C16 H17 SING N N 50 D7S C16 H18 SING N N 51 D7S C15 H19 SING N N 52 D7S C15 H20 SING N N 53 D7S C14 H21 SING N N 54 D7S C7 H22 SING N N 55 D7S C6 H23 SING N N 56 D7S C6 H24 SING N N 57 D7S C18 H25 SING N N 58 D7S C18 H26 SING N N 59 D7S C18 H27 SING N N 60 D7S C12 H28 SING N N 61 D7S C12 H29 SING N N 62 D7S C11 H30 SING N N 63 D7S C11 H31 SING N N 64 D7S C9 H32 SING N N 65 D7S C1 H33 SING N N 66 D7S C1 H34 SING N N 67 D7S C19 H35 SING N N 68 D7S C19 H36 SING N N 69 D7S C19 H37 SING N N 70 D7S C5 H38 SING N N 71 D7S C4 H39 SING N N 72 D7S C4 H40 SING N N 73 D7S C2 H41 SING N N 74 D7S C2 H42 SING N N 75 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D7S SMILES ACDLabs 12.01 "O=C(O)C(C)CCCC(C)C4C3(CCC1C(=CCC2CC(=O)CCC12C)C3CC4)C" D7S InChI InChI 1.03 "InChI=1S/C27H42O3/c1-17(6-5-7-18(2)25(29)30)22-10-11-23-21-9-8-19-16-20(28)12-14-26(19,3)24(21)13-15-27(22,23)4/h9,17-19,22-24H,5-8,10-16H2,1-4H3,(H,29,30)/t17-,18+,19+,22-,23+,24+,26+,27-/m1/s1" D7S InChIKey InChI 1.03 SQTAVUCHOVVOFD-OBRBSRNPSA-N D7S SMILES_CANONICAL CACTVS 3.370 "C[C@H](CCC[C@H](C)C(O)=O)[C@H]1CC[C@H]2C3=CC[C@H]4CC(=O)CC[C@]4(C)[C@H]3CC[C@]12C" D7S SMILES CACTVS 3.370 "C[CH](CCC[CH](C)C(O)=O)[CH]1CC[CH]2C3=CC[CH]4CC(=O)CC[C]4(C)[CH]3CC[C]12C" D7S SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H](CCC[C@H](C)C(=O)O)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3C2=CC[C@@H]4[C@@]3(CCC(=O)C4)C)C" D7S SMILES "OpenEye OEToolkits" 1.7.6 "CC(CCCC(C)C(=O)O)C1CCC2C1(CCC3C2=CCC4C3(CCC(=O)C4)C)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D7S "SYSTEMATIC NAME" ACDLabs 12.01 "(5beta,14beta,17alpha,25S)-3-oxocholest-7-en-26-oic acid" D7S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,6R)-6-[(5S,9R,10S,13R,14R,17R)-10,13-dimethyl-3-oxidanylidene-1,2,4,5,6,9,11,12,14,15,16,17-dodecahydrocyclopenta[a]phenanthren-17-yl]-2-methyl-heptanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D7S "Create component" 2011-11-18 RCSB D7S "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id D7S _pdbx_chem_comp_synonyms.name "(25S)-delta7-dafachronic acid" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##