data_D82 # _chem_comp.id D82 _chem_comp.name beta-Saxitoxinol _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H17 N7 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(2Z,3aS,4R,6Z,7S,10S,10aS)-10-hydroxy-2,6-diiminooctahydro-1H,8H-pyrrolo[1,2-c]purin-4-yl]methyl carbamate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-11-29 _chem_comp.pdbx_modified_date 2022-01-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 283.287 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D82 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7SZF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D82 N N1 N 0 1 N N N -5.574 19.173 -1.463 -5.155 0.662 -0.200 N D82 1 D82 C C1 C 0 1 N N N -5.194 19.123 -2.742 -3.985 0.201 0.285 C D82 2 D82 O O1 O 0 1 N N N -5.919 19.266 -3.705 -3.957 -0.833 0.923 O D82 3 D82 C5 C2 C 0 1 N N N 0.504 20.335 -6.794 1.717 -2.779 0.046 C5 D82 4 D82 N4 N2 N 0 1 N N N 0.739 17.446 -6.030 2.916 0.025 0.281 N4 D82 5 D82 N3 N3 N 0 1 N N N -0.126 19.355 -4.749 1.006 -0.721 -1.005 N3 D82 6 D82 C2 C3 C 0 1 N N R -2.213 17.625 -4.048 -0.446 1.239 0.262 C2 D82 7 D82 O1 O2 O 0 1 N N N -3.877 18.859 -2.851 -2.847 0.886 0.062 O1 D82 8 D82 C6 C4 C 0 1 N N S -0.598 19.313 -7.022 1.380 -1.710 1.116 C6 D82 9 D82 C7 C5 C 0 1 N N S -0.393 18.344 -5.786 1.508 -0.393 0.327 C7 D82 10 D82 C8 C6 C 0 1 N N N 0.473 16.152 -5.745 2.946 1.385 0.479 C8 D82 11 D82 C9 C7 C 0 1 N N S -1.526 17.336 -5.390 0.784 0.756 1.007 C9 D82 12 D82 C1 C8 C 0 1 N N N -3.371 18.597 -4.182 -1.625 0.329 0.615 C1 D82 13 D82 C3 C9 C 0 1 N N N -0.290 19.093 -3.414 0.203 0.075 -1.786 C3 D82 14 D82 C4 C10 C 0 1 N N N 0.567 20.539 -5.283 1.476 -2.080 -1.309 C4 D82 15 D82 N1 N4 N 0 1 N N N -1.244 18.195 -3.108 -0.262 1.232 -1.187 N1 D82 16 D82 N2 N5 N 0 1 N N N 0.417 19.812 -2.549 -0.101 -0.239 -3.014 N2 D82 17 D82 N5 N6 N 0 1 N N N 1.232 15.100 -5.779 3.954 2.148 0.163 N5 D82 18 D82 N6 N7 N 0 1 N N N -0.817 16.067 -5.356 1.784 1.840 1.050 N6 D82 19 D82 O2 O3 O 0 1 N N N -1.864 19.881 -6.833 0.047 -1.882 1.603 O2 D82 20 D82 H1 H1 H 0 1 N N N -6.532 19.341 -1.232 -5.975 0.169 -0.040 H1 D82 21 D82 H2 H2 H 0 1 N N N -4.900 19.042 -0.736 -5.178 1.490 -0.706 H2 D82 22 D82 H3 H3 H 0 1 N N N 1.465 19.954 -7.171 2.759 -3.087 0.133 H3 D82 23 D82 H4 H4 H 0 1 N N N 0.261 21.281 -7.300 1.059 -3.641 0.150 H4 D82 24 D82 H5 H5 H 0 1 N N N 1.624 17.761 -6.374 3.682 -0.552 0.137 H5 D82 25 D82 H6 H6 H 0 1 N N N -2.596 16.677 -3.644 -0.677 2.254 0.583 H6 D82 26 D82 H7 H7 H 0 1 N N N -0.480 18.777 -7.975 2.097 -1.745 1.937 H7 D82 27 D82 H8 H8 H 0 1 N N N -2.284 17.327 -6.187 0.508 0.468 2.021 H8 D82 28 D82 H9 H9 H 0 1 N N N -3.024 19.534 -4.643 -1.456 -0.663 0.197 H9 D82 29 D82 H10 H10 H 0 1 N N N -4.163 18.154 -4.804 -1.716 0.257 1.698 H10 D82 30 D82 H11 H11 H 0 1 N N N 1.610 20.575 -4.934 2.405 -2.036 -1.876 H11 D82 31 D82 H12 H12 H 0 1 N N N 0.049 21.464 -4.989 0.717 -2.619 -1.876 H12 D82 32 D82 H13 H13 H 0 1 N N N 0.163 19.615 -1.602 -0.670 0.346 -3.538 H13 D82 33 D82 H15 H15 H 0 1 N N N 0.743 14.276 -5.492 3.910 3.103 0.330 H15 D82 34 D82 H17 H17 H 0 1 N N N -2.532 19.222 -6.981 -0.107 -2.733 2.035 H17 D82 35 D82 H18 H18 H 0 1 N N N -1.296 17.890 -2.157 -0.461 2.020 -1.716 H18 D82 36 D82 H14 H14 H 0 1 N N N -1.246 15.210 -5.071 1.644 2.725 1.420 H14 D82 37 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D82 C6 O2 SING N N 1 D82 C6 C5 SING N N 2 D82 C6 C7 SING N N 3 D82 C5 C4 SING N N 4 D82 N4 C7 SING N N 5 D82 N4 C8 SING N N 6 D82 C7 C9 SING N N 7 D82 C7 N3 SING N N 8 D82 N5 C8 DOUB N N 9 D82 C8 N6 SING N N 10 D82 C9 N6 SING N N 11 D82 C9 C2 SING N N 12 D82 C4 N3 SING N N 13 D82 N3 C3 SING N N 14 D82 C1 C2 SING N N 15 D82 C1 O1 SING N N 16 D82 C2 N1 SING N N 17 D82 O C DOUB N N 18 D82 C3 N1 SING N N 19 D82 C3 N2 DOUB N N 20 D82 O1 C SING N N 21 D82 C N SING N N 22 D82 N H1 SING N N 23 D82 N H2 SING N N 24 D82 C5 H3 SING N N 25 D82 C5 H4 SING N N 26 D82 N4 H5 SING N N 27 D82 C2 H6 SING N N 28 D82 C6 H7 SING N N 29 D82 C9 H8 SING N N 30 D82 C1 H9 SING N N 31 D82 C1 H10 SING N N 32 D82 C4 H11 SING N N 33 D82 C4 H12 SING N N 34 D82 N2 H13 SING N N 35 D82 N5 H15 SING N N 36 D82 O2 H17 SING N N 37 D82 N1 H18 SING N N 38 D82 N6 H14 SING N N 39 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D82 SMILES ACDLabs 12.01 "NC(=O)OCC1NC(=N)N2CCC(O)C32NC(=N)NC13" D82 InChI InChI 1.03 "InChI=1S/C10H17N7O3/c11-7-15-6-4(3-20-9(13)19)14-8(12)17-2-1-5(18)10(6,17)16-7/h4-6,18H,1-3H2,(H2,12,14)(H2,13,19)(H3,11,15,16)/t4-,5-,6-,10+/m0/s1" D82 InChIKey InChI 1.03 NILHUXIFTLLDPJ-AVGUDYQDSA-N D82 SMILES_CANONICAL CACTVS 3.385 "NC(=O)OC[C@@H]1NC(=N)N2CC[C@H](O)[C@@]23NC(=N)N[C@@H]13" D82 SMILES CACTVS 3.385 "NC(=O)OC[CH]1NC(=N)N2CC[CH](O)[C]23NC(=N)N[CH]13" D82 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C\1/N[C@H]2[C@@H](N/C(=N/[H])/N3[C@]2(N1)[C@H](CC3)O)COC(=O)N" D82 SMILES "OpenEye OEToolkits" 2.0.7 "C1CN2C(=N)NC(C3C2(C1O)NC(=N)N3)COC(=O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D82 "SYSTEMATIC NAME" ACDLabs 12.01 "[(2Z,3aS,4R,6Z,7S,10S,10aS)-10-hydroxy-2,6-diiminooctahydro-1H,8H-pyrrolo[1,2-c]purin-4-yl]methyl carbamate" D82 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{S},4~{R},10~{S},10~{a}~{S})-2,6-bis(azanylidene)-10-oxidanyl-1,3,3~{a},4,5,8,9,10-octahydropyrrolo[1,2-c]purin-4-yl]methyl carbamate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id D82 _pdbx_chem_comp_synonyms.name "[(2Z,3aS,4R,6Z,7S,10S,10aS)-10-hydroxy-2,6-diiminooctahydro-1H,8H-pyrrolo[1,2-c]purin-4-yl]methyl carbamate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D82 "Create component" 2021-11-29 RCSB D82 "Initial release" 2022-01-19 RCSB ##