data_D8K # _chem_comp.id D8K _chem_comp.name "~{N}-[(5~{S},8~{S},11~{S},15~{R})-8-[(4-fluorophenyl)methyl]-5-(hydroxymethyl)-2,7,10,14-tetrakis(oxidanylidene)-1,6,9,13-tetrazabicyclo[13.3.0]octadecan-11-yl]-5-methyl-1,2-oxazole-3-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H33 F N6 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-01-09 _chem_comp.pdbx_modified_date 2018-02-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 572.585 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D8K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6FFN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D8K C2 C1 C 0 1 N N S -28.115 4.694 0.157 2.477 0.741 1.060 C2 D8K 1 D8K C3 C2 C 0 1 N N N -28.113 5.575 1.429 3.459 1.769 0.493 C3 D8K 2 D8K C12 C3 C 0 1 N N S -26.175 6.528 -2.669 -0.875 1.397 2.753 C12 D8K 3 D8K C13 C4 C 0 1 N N N -26.145 8.044 -2.823 -0.938 1.082 4.251 C13 D8K 4 D8K C14 C5 C 0 1 N N N -26.264 5.845 -4.072 -2.159 0.914 2.072 C14 D8K 5 D8K C15 C6 C 0 1 N N N -25.581 4.468 -3.965 -3.095 2.097 1.822 C15 D8K 6 D8K C16 C7 C 0 1 Y N N -29.419 5.553 2.222 4.657 1.057 -0.080 C16 D8K 7 D8K C17 C8 C 0 1 Y N N -29.329 5.371 3.616 4.659 0.666 -1.406 C17 D8K 8 D8K C18 C9 C 0 1 Y N N -30.490 5.326 4.395 5.758 0.013 -1.933 C18 D8K 9 D8K C19 C10 C 0 1 Y N N -31.742 5.477 3.781 6.856 -0.250 -1.132 C19 D8K 10 D8K C20 C11 C 0 1 Y N N -31.824 5.681 2.397 6.853 0.142 0.196 C20 D8K 11 D8K C21 C12 C 0 1 Y N N -30.662 5.712 1.608 5.755 0.800 0.719 C21 D8K 12 D8K C23 C13 C 0 1 N N N -25.695 3.562 -5.165 -3.066 2.463 0.359 C23 D8K 13 D8K C26 C14 C 0 1 N N N -29.400 -0.643 -0.774 -0.149 -2.506 -0.689 C26 D8K 14 D8K C27 C15 C 0 1 Y N N -30.276 -1.369 -1.721 -1.070 -3.441 0.003 C27 D8K 15 D8K N1 N1 N 0 1 N N N -27.891 3.260 0.318 1.933 -0.107 -0.021 N1 D8K 16 D8K C4 C16 C 0 1 N N N -27.840 2.332 -0.684 0.994 0.450 -0.836 C4 D8K 17 D8K O5 O1 O 0 1 N N N -28.045 2.656 -1.850 0.721 1.628 -0.758 O5 D8K 18 D8K C6 C17 C 0 1 N N S -27.478 0.881 -0.440 0.296 -0.412 -1.855 C6 D8K 19 D8K N7 N2 N 0 1 N N N -28.374 0.095 -1.278 -0.614 -1.336 -1.171 N7 D8K 20 D8K C8 C18 C 0 1 N N N -25.965 0.651 -0.836 -0.493 0.459 -2.831 C8 D8K 21 D8K C9 C19 C 0 1 N N N -27.026 5.187 -0.758 1.326 1.439 1.742 C9 D8K 22 D8K N10 N3 N 0 1 N N N -27.256 6.037 -1.791 0.266 0.682 2.144 N10 D8K 23 D8K O11 O2 O 0 1 N N N -25.887 4.770 -0.468 1.346 2.638 1.920 O11 D8K 24 D8K N22 N4 N 0 1 N N N -25.598 1.068 -2.239 -1.517 1.235 -2.102 N22 D8K 25 D8K O24 O3 O 0 1 N N N -26.469 3.857 -6.116 -2.265 3.283 -0.040 O24 D8K 26 D8K F25 F1 F 0 1 N N N -32.858 5.427 4.508 7.930 -0.888 -1.645 F25 D8K 27 D8K O28 O4 O 0 1 N N N -29.657 -0.752 0.422 1.023 -2.795 -0.822 O28 D8K 28 D8K N29 N5 N 0 1 Y N N -30.037 -1.448 -2.980 -2.351 -3.271 0.215 N29 D8K 29 D8K O30 O5 O 0 1 Y N N -31.115 -2.210 -3.528 -2.830 -4.213 0.802 O30 D8K 30 D8K C31 C20 C 0 1 Y N N -31.936 -2.481 -2.517 -1.914 -5.155 1.064 C31 D8K 31 D8K C32 C21 C 0 1 Y N N -31.541 -2.009 -1.345 -0.740 -4.706 0.564 C32 D8K 32 D8K C33 C22 C 0 1 N N N -33.196 -3.254 -2.786 -2.147 -6.462 1.778 C33 D8K 33 D8K C34 C23 C 0 1 N N N -24.418 1.713 -2.595 -2.810 1.072 -2.508 C34 D8K 34 D8K O35 O6 O 0 1 N N N -23.565 2.019 -1.765 -3.102 0.209 -3.308 O35 D8K 35 D8K C36 C24 C 0 1 N N R -23.967 2.158 -3.996 -3.868 1.996 -1.963 C36 D8K 36 D8K C37 C25 C 0 1 N N N -23.010 1.151 -4.689 -5.243 1.612 -2.514 C37 D8K 37 D8K C38 C26 C 0 1 N N N -23.956 0.385 -5.637 -6.008 0.966 -1.350 C38 D8K 38 D8K C39 C27 C 0 1 N N N -24.901 1.476 -6.202 -5.078 1.061 -0.135 C39 D8K 39 D8K N40 N6 N 0 1 N N N -24.909 2.447 -5.118 -3.932 1.891 -0.501 N40 D8K 40 D8K O41 O7 O 0 1 N N N -26.104 8.680 -1.541 0.223 1.607 4.898 O41 D8K 41 D8K H1 H1 H 0 1 N N N -29.080 4.844 -0.349 2.998 0.112 1.788 H1 D8K 42 D8K H2 H2 H 0 1 N N N -27.306 5.223 2.088 2.969 2.345 -0.292 H2 D8K 43 D8K H3 H3 H 0 1 N N N -27.913 6.614 1.126 3.782 2.441 1.288 H3 D8K 44 D8K H4 H4 H 0 1 N N N -25.215 6.224 -2.226 -0.762 2.470 2.608 H4 D8K 45 D8K H5 H5 H 0 1 N N N -25.252 8.331 -3.398 -1.830 1.539 4.681 H5 D8K 46 D8K H6 H6 H 0 1 N N N -27.048 8.371 -3.360 -0.978 0.003 4.394 H6 D8K 47 D8K H7 H7 H 0 1 N N N -25.748 6.462 -4.823 -1.908 0.445 1.120 H7 D8K 48 D8K H8 H8 H 0 1 N N N -27.318 5.719 -4.362 -2.658 0.186 2.714 H8 D8K 49 D8K H9 H9 H 0 1 N N N -26.024 3.942 -3.106 -4.110 1.822 2.108 H9 D8K 50 D8K H10 H10 H 0 1 N N N -24.511 4.640 -3.777 -2.770 2.952 2.414 H10 D8K 51 D8K H11 H11 H 0 1 N N N -28.362 5.266 4.084 3.802 0.870 -2.031 H11 D8K 52 D8K H12 H12 H 0 1 N N N -30.423 5.176 5.462 5.759 -0.293 -2.969 H12 D8K 53 D8K H13 H13 H 0 1 N N N -32.790 5.816 1.932 7.709 -0.062 0.822 H13 D8K 54 D8K H14 H14 H 0 1 N N N -30.730 5.857 0.540 5.754 1.109 1.754 H14 D8K 55 D8K H15 H15 H 0 1 N N N -27.763 2.925 1.251 2.231 -1.027 -0.146 H15 D8K 56 D8K H16 H16 H 0 1 N N N -27.615 0.632 0.623 1.043 -0.986 -2.408 H16 D8K 57 D8K H17 H17 H 0 1 N N N -28.228 0.098 -2.267 -1.550 -1.105 -1.065 H17 D8K 58 D8K H18 H18 H 0 1 N N N -25.745 -0.422 -0.731 0.188 1.147 -3.336 H18 D8K 59 D8K H19 H19 H 0 1 N N N -25.339 1.224 -0.136 -0.973 -0.176 -3.578 H19 D8K 60 D8K H20 H20 H 0 1 N N N -28.192 6.342 -1.964 0.262 -0.285 2.036 H20 D8K 61 D8K H21 H21 H 0 1 N N N -26.252 0.865 -2.968 -1.289 1.834 -1.373 H21 D8K 62 D8K H22 H22 H 0 1 N N N -32.018 -2.077 -0.379 0.222 -5.195 0.583 H22 D8K 63 D8K H23 H23 H 0 1 N N N -33.255 -3.498 -3.857 -3.197 -6.540 2.062 H23 D8K 64 D8K H24 H24 H 0 1 N N N -33.188 -4.184 -2.198 -1.887 -7.289 1.117 H24 D8K 65 D8K H25 H25 H 0 1 N N N -34.067 -2.646 -2.500 -1.525 -6.503 2.673 H25 D8K 66 D8K H26 H26 H 0 1 N N N -23.376 3.074 -3.845 -3.628 3.025 -2.244 H26 D8K 67 D8K H27 H27 H 0 1 N N N -22.548 0.473 -3.956 -5.769 2.504 -2.859 H27 D8K 68 D8K H28 H28 H 0 1 N N N -22.223 1.674 -5.251 -5.140 0.904 -3.335 H28 D8K 69 D8K H29 H29 H 0 1 N N N -24.527 -0.377 -5.086 -6.931 1.513 -1.161 H29 D8K 70 D8K H30 H30 H 0 1 N N N -23.389 -0.097 -6.447 -6.229 -0.077 -1.577 H30 D8K 71 D8K H31 H31 H 0 1 N N N -24.501 1.913 -7.129 -5.614 1.520 0.697 H31 D8K 72 D8K H32 H32 H 0 1 N N N -25.908 1.076 -6.390 -4.741 0.066 0.152 H32 D8K 73 D8K H33 H33 H 0 1 N N N -26.086 9.623 -1.655 0.250 1.444 5.850 H33 D8K 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D8K C39 C38 SING N N 1 D8K C39 N40 SING N N 2 D8K O24 C23 DOUB N N 3 D8K C38 C37 SING N N 4 D8K C23 N40 SING N N 5 D8K C23 C15 SING N N 6 D8K N40 C36 SING N N 7 D8K C37 C36 SING N N 8 D8K C14 C15 SING N N 9 D8K C14 C12 SING N N 10 D8K C36 C34 SING N N 11 D8K O30 N29 SING Y N 12 D8K O30 C31 SING Y N 13 D8K N29 C27 DOUB Y N 14 D8K C13 C12 SING N N 15 D8K C13 O41 SING N N 16 D8K C33 C31 SING N N 17 D8K C12 N10 SING N N 18 D8K C34 N22 SING N N 19 D8K C34 O35 DOUB N N 20 D8K C31 C32 DOUB Y N 21 D8K N22 C8 SING N N 22 D8K O5 C4 DOUB N N 23 D8K N10 C9 SING N N 24 D8K C27 C32 SING Y N 25 D8K C27 C26 SING N N 26 D8K N7 C26 SING N N 27 D8K N7 C6 SING N N 28 D8K C8 C6 SING N N 29 D8K C26 O28 DOUB N N 30 D8K C9 O11 DOUB N N 31 D8K C9 C2 SING N N 32 D8K C4 C6 SING N N 33 D8K C4 N1 SING N N 34 D8K C2 N1 SING N N 35 D8K C2 C3 SING N N 36 D8K C3 C16 SING N N 37 D8K C21 C16 DOUB Y N 38 D8K C21 C20 SING Y N 39 D8K C16 C17 SING Y N 40 D8K C20 C19 DOUB Y N 41 D8K C17 C18 DOUB Y N 42 D8K C19 C18 SING Y N 43 D8K C19 F25 SING N N 44 D8K C2 H1 SING N N 45 D8K C3 H2 SING N N 46 D8K C3 H3 SING N N 47 D8K C12 H4 SING N N 48 D8K C13 H5 SING N N 49 D8K C13 H6 SING N N 50 D8K C14 H7 SING N N 51 D8K C14 H8 SING N N 52 D8K C15 H9 SING N N 53 D8K C15 H10 SING N N 54 D8K C17 H11 SING N N 55 D8K C18 H12 SING N N 56 D8K C20 H13 SING N N 57 D8K C21 H14 SING N N 58 D8K N1 H15 SING N N 59 D8K C6 H16 SING N N 60 D8K N7 H17 SING N N 61 D8K C8 H18 SING N N 62 D8K C8 H19 SING N N 63 D8K N10 H20 SING N N 64 D8K N22 H21 SING N N 65 D8K C32 H22 SING N N 66 D8K C33 H23 SING N N 67 D8K C33 H24 SING N N 68 D8K C33 H25 SING N N 69 D8K C36 H26 SING N N 70 D8K C37 H27 SING N N 71 D8K C37 H28 SING N N 72 D8K C38 H29 SING N N 73 D8K C38 H30 SING N N 74 D8K C39 H31 SING N N 75 D8K C39 H32 SING N N 76 D8K O41 H33 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D8K InChI InChI 1.03 "InChI=1S/C27H33FN6O7/c1-15-11-20(33-41-15)25(38)32-21-13-29-27(40)22-3-2-10-34(22)23(36)9-8-18(14-35)30-24(37)19(31-26(21)39)12-16-4-6-17(28)7-5-16/h4-7,11,18-19,21-22,35H,2-3,8-10,12-14H2,1H3,(H,29,40)(H,30,37)(H,31,39)(H,32,38)/t18-,19-,21-,22+/m0/s1" D8K InChIKey InChI 1.03 XGIISLQJIYRWPH-BLKABHOGSA-N D8K SMILES_CANONICAL CACTVS 3.385 "Cc1onc(c1)C(=O)N[C@H]2CNC(=O)[C@H]3CCCN3C(=O)CC[C@@H](CO)NC(=O)[C@H](Cc4ccc(F)cc4)NC2=O" D8K SMILES CACTVS 3.385 "Cc1onc(c1)C(=O)N[CH]2CNC(=O)[CH]3CCCN3C(=O)CC[CH](CO)NC(=O)[CH](Cc4ccc(F)cc4)NC2=O" D8K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc(no1)C(=O)N[C@H]2CNC(=O)[C@H]3CCCN3C(=O)CC[C@H](NC(=O)[C@@H](NC2=O)Cc4ccc(cc4)F)CO" D8K SMILES "OpenEye OEToolkits" 2.0.6 "Cc1cc(no1)C(=O)NC2CNC(=O)C3CCCN3C(=O)CCC(NC(=O)C(NC2=O)Cc4ccc(cc4)F)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D8K "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[(5~{S},8~{S},11~{S},15~{R})-8-[(4-fluorophenyl)methyl]-5-(hydroxymethyl)-2,7,10,14-tetrakis(oxidanylidene)-1,6,9,13-tetrazabicyclo[13.3.0]octadecan-11-yl]-5-methyl-1,2-oxazole-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D8K "Create component" 2018-01-09 EBI D8K "Initial release" 2018-02-21 RCSB #