data_D8R # _chem_comp.id D8R _chem_comp.name "(2~{S})-2-azanyl-6-[[(2~{R})-2-oxidanylpropanoyl]amino]hexanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H18 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-11 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 218.250 _chem_comp.one_letter_code K _chem_comp.three_letter_code D8R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7XF4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D8R N N N 0 1 N N N Y Y N 37.517 45.661 24.932 3.829 1.745 -0.199 N D8R 1 D8R CA CA C 0 1 N N S Y N N 38.195 46.092 26.152 3.730 0.399 0.382 CA D8R 2 D8R CB CB C 0 1 N N N N N N 39.031 47.363 25.956 2.483 -0.301 -0.163 CB D8R 3 D8R CG CG C 0 1 N N N N N N 40.026 47.347 24.799 1.232 0.440 0.315 CG D8R 4 D8R CD CD C 0 1 N N N N N N 40.792 48.651 24.615 -0.014 -0.259 -0.230 CD D8R 5 D8R CE CE C 0 1 N N N N N N 41.553 48.750 23.295 -1.265 0.481 0.248 CE D8R 6 D8R NZ NZ N 0 1 N N N N N N 42.468 49.942 23.134 -2.459 -0.189 -0.274 NZ D8R 7 D8R C C C 0 1 N N N Y N Y 37.132 46.409 27.208 4.954 -0.398 0.015 C D8R 8 D8R O OXT O 0 1 N N N Y N Y 36.499 47.451 26.954 5.634 -0.063 -0.926 OXT D8R 9 D8R C1 C1 C 0 1 N N N N N N 42.512 50.454 21.794 -3.683 0.291 0.020 C1 D8R 10 D8R C2 C2 C 0 1 N N R N N N 42.938 51.891 21.525 -4.911 -0.398 -0.517 C2 D8R 11 D8R C3 C3 C 0 1 N N N N N N 44.146 51.960 20.619 -5.015 -1.799 0.088 C3 D8R 12 D8R O1 O1 O 0 1 N N N N N N 42.165 49.735 20.893 -3.797 1.278 0.716 O1 D8R 13 D8R O2 O2 O 0 1 N N N N N N 41.872 52.629 20.947 -6.073 0.358 -0.169 O2 D8R 14 D8R OXT O3 O 0 1 N Y N Y N Y 37.144 45.433 28.242 5.290 -1.482 0.733 O3 D8R 15 D8R H H1 H 0 1 N N N Y Y N 36.990 44.832 25.118 4.609 2.251 0.194 H1 D8R 16 D8R H2 H2 H 0 1 N Y N Y Y N 36.901 46.384 24.620 3.897 1.700 -1.204 H2 D8R 17 D8R HA H4 H 0 1 N N N Y N N 38.846 45.288 26.526 3.658 0.476 1.467 H4 D8R 18 D8R H5 H5 H 0 1 N N N N N N 39.597 47.538 26.883 2.512 -0.299 -1.252 H5 D8R 19 D8R H6 H6 H 0 1 N N N N N N 38.336 48.199 25.788 2.456 -1.329 0.198 H6 D8R 20 D8R H7 H7 H 0 1 N N N N N N 39.473 47.138 23.871 1.203 0.438 1.405 H7 D8R 21 D8R H8 H8 H 0 1 N N N N N N 40.754 46.542 24.981 1.259 1.468 -0.046 H8 D8R 22 D8R H9 H9 H 0 1 N N N N N N 41.516 48.745 25.438 0.015 -0.258 -1.319 H9 D8R 23 D8R H10 H10 H 0 1 N N N N N N 40.073 49.483 24.662 -0.041 -1.288 0.131 H10 D8R 24 D8R H11 H11 H 0 1 N N N N N N 40.812 48.785 22.483 -1.294 0.479 1.338 H11 D8R 25 D8R H12 H12 H 0 1 N N N N N N 42.165 47.842 23.193 -1.238 1.510 -0.113 H12 D8R 26 D8R H13 H13 H 0 1 N N N N N N 42.992 50.336 23.889 -2.368 -0.978 -0.831 H13 D8R 27 D8R H14 H14 H 0 1 N N N N N N 43.211 52.346 22.488 -4.840 -0.475 -1.602 H14 D8R 28 D8R H15 H15 H 0 1 N N N N N N 44.973 51.389 21.066 -5.087 -1.722 1.173 H15 D8R 29 D8R H16 H16 H 0 1 N N N N N N 43.893 51.532 19.638 -5.903 -2.298 -0.300 H16 D8R 30 D8R H17 H17 H 0 1 N N N N N N 44.451 53.009 20.494 -4.129 -2.376 -0.177 H17 D8R 31 D8R H18 H18 H 0 1 N N N N N N 41.260 52.031 20.534 -6.902 -0.027 -0.483 H18 D8R 32 D8R HXT H19 H 0 1 N Y N Y N Y 36.492 45.656 28.896 6.084 -1.961 0.459 H19 D8R 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D8R C3 C2 SING N N 1 D8R O1 C1 DOUB N N 2 D8R O2 C2 SING N N 3 D8R C2 C1 SING N N 4 D8R C1 NZ SING N N 5 D8R NZ CE SING N N 6 D8R CE CD SING N N 7 D8R CD CG SING N N 8 D8R CG CB SING N N 9 D8R N CA SING N N 10 D8R CB CA SING N N 11 D8R CA C SING N N 12 D8R O C DOUB N N 13 D8R C OXT SING N N 14 D8R N H SING N N 15 D8R N H2 SING N N 16 D8R CA HA SING N N 17 D8R CB H5 SING N N 18 D8R CB H6 SING N N 19 D8R CG H7 SING N N 20 D8R CG H8 SING N N 21 D8R CD H9 SING N N 22 D8R CD H10 SING N N 23 D8R CE H11 SING N N 24 D8R CE H12 SING N N 25 D8R NZ H13 SING N N 26 D8R C2 H14 SING N N 27 D8R C3 H15 SING N N 28 D8R C3 H16 SING N N 29 D8R C3 H17 SING N N 30 D8R O2 H18 SING N N 31 D8R OXT HXT SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D8R InChI InChI 1.03 "InChI=1S/C9H18N2O4/c1-6(12)8(13)11-5-3-2-4-7(10)9(14)15/h6-7,12H,2-5,10H2,1H3,(H,11,13)(H,14,15)/t6-,7+/m1/s1" D8R InChIKey InChI 1.03 TVFTZQHBUQYHFH-RQJHMYQMSA-N D8R SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)C(=O)NCCCC[C@H](N)C(O)=O" D8R SMILES CACTVS 3.385 "C[CH](O)C(=O)NCCCC[CH](N)C(O)=O" D8R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)NCCCC[C@@H](C(=O)O)N)O" D8R SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)NCCCCC(C(=O)O)N)O" # _pdbx_chem_comp_identifier.comp_id D8R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-6-[[(2~{R})-2-oxidanylpropanoyl]amino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D8R "Create component" 2022-04-11 PDBJ D8R "Initial release" 2023-05-10 RCSB D8R "Modify backbone" 2023-11-03 PDBE #