data_D96 # _chem_comp.id D96 _chem_comp.name "N-{4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}-D-glutamic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H19 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-04-15 _chem_comp.pdbx_modified_date 2019-06-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 413.384 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D96 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6OJU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D96 N1 N1 N 0 1 N N N 213.839 -130.845 102.061 6.207 0.647 -1.304 N1 D96 1 D96 C1 C1 C 0 1 Y N N 215.041 -130.702 102.687 5.275 -0.317 -1.317 C1 D96 2 D96 C2 C2 C 0 1 Y N N 216.234 -131.319 102.322 4.601 -0.632 -0.129 C2 D96 3 D96 C3 C3 C 0 1 N N N 216.228 -132.213 101.166 4.922 0.075 1.051 C3 D96 4 D96 N2 N2 N 0 1 N N N 214.976 -132.281 100.620 5.873 1.034 0.983 N2 D96 5 D96 C4 C4 C 0 1 N N N 213.829 -131.634 101.035 6.497 1.298 -0.200 C4 D96 6 D96 C5 C5 C 0 1 Y N N 217.213 -130.893 103.238 3.663 -1.704 -0.460 C5 D96 7 D96 C6 C6 C 0 1 Y N N 216.594 -130.025 104.133 3.819 -1.961 -1.770 C6 D96 8 D96 N3 N3 N 0 1 Y N N 215.267 -129.920 103.783 4.782 -1.135 -2.291 N3 D96 9 D96 O1 O1 O 0 1 N N N 217.159 -132.855 100.679 4.356 -0.172 2.102 O1 D96 10 D96 N4 N4 N 0 1 N N N 212.610 -131.881 100.270 7.458 2.276 -0.240 N4 D96 11 D96 C7 C7 C 0 1 N N N 218.660 -131.288 103.255 2.708 -2.387 0.484 C7 D96 12 D96 C8 C8 C 0 1 Y N N 219.323 -130.823 101.995 1.439 -1.581 0.585 C8 D96 13 D96 C9 C9 C 0 1 Y N N 218.956 -129.604 101.442 0.393 -1.830 -0.287 C9 D96 14 D96 C10 C10 C 0 1 Y N N 219.562 -129.163 100.275 -0.771 -1.096 -0.199 C10 D96 15 D96 C11 C11 C 0 1 Y N N 220.537 -129.940 99.666 -0.894 -0.101 0.771 C11 D96 16 D96 C12 C12 C 0 1 Y N N 220.907 -131.161 100.214 0.164 0.146 1.647 C12 D96 17 D96 C13 C13 C 0 1 Y N N 220.298 -131.605 101.383 1.322 -0.599 1.553 C13 D96 18 D96 C14 C14 C 0 1 N N N 221.176 -129.448 98.406 -2.137 0.694 0.867 C14 D96 19 D96 O2 O2 O 0 1 N N N 220.794 -128.466 97.773 -2.240 1.563 1.710 O2 D96 20 D96 N5 N5 N 0 1 N N N 222.208 -130.211 98.042 -3.158 0.453 0.020 N5 D96 21 D96 C15 C15 C 0 1 N N R 223.043 -130.019 96.855 -4.390 1.240 0.115 C15 D96 22 D96 C16 C16 C 0 1 N N N 224.213 -130.963 96.900 -5.556 0.433 -0.458 C16 D96 23 D96 C17 C17 C 0 1 N N N 223.508 -128.591 96.752 -4.231 2.519 -0.668 C17 D96 24 D96 O3 O3 O 0 1 N N N 223.801 -127.824 97.666 -5.240 3.401 -0.723 O3 D96 25 D96 O4 O4 O 0 1 N N N 223.545 -128.233 95.443 -3.195 2.748 -1.245 O4 D96 26 D96 C18 C18 C 0 1 N N N 223.733 -132.344 97.243 -5.797 -0.803 0.411 C18 D96 27 D96 C19 C19 C 0 1 N N N 223.320 -133.075 95.998 -6.946 -1.598 -0.154 C19 D96 28 D96 O5 O5 O 0 1 N N N 223.308 -132.644 94.848 -7.514 -1.215 -1.149 O5 D96 29 D96 O6 O6 O 0 1 N N N 222.939 -134.338 96.320 -7.338 -2.731 0.450 O6 D96 30 D96 H1 H1 H 0 1 N N N 214.879 -132.873 99.820 6.112 1.535 1.778 H1 D96 31 D96 H2 H2 H 0 1 N N N 217.073 -129.521 104.960 3.269 -2.705 -2.327 H2 D96 32 D96 H3 H3 H 0 1 N N N 214.582 -129.363 104.253 5.071 -1.133 -3.217 H3 D96 33 D96 H4 H4 H 0 1 N N N 211.755 -131.436 100.535 7.684 2.767 0.566 H4 D96 34 D96 H5 H5 H 0 1 N N N 212.631 -132.495 99.481 7.912 2.477 -1.073 H5 D96 35 D96 H6 H6 H 0 1 N N N 218.740 -132.383 103.328 2.477 -3.384 0.108 H6 D96 36 D96 H7 H7 H 0 1 N N N 219.155 -130.826 104.121 3.167 -2.468 1.469 H7 D96 37 D96 H8 H8 H 0 1 N N N 218.199 -129.000 101.920 0.490 -2.601 -1.037 H8 D96 38 D96 H9 H9 H 0 1 N N N 219.275 -128.216 99.841 -1.587 -1.292 -0.880 H9 D96 39 D96 H10 H10 H 0 1 N N N 221.664 -131.763 99.735 0.076 0.915 2.400 H10 D96 40 D96 H11 H11 H 0 1 N N N 220.581 -132.554 101.814 2.141 -0.410 2.230 H11 D96 41 D96 H12 H12 H 0 1 N N N 222.432 -130.985 98.634 -3.076 -0.241 -0.653 H12 D96 42 D96 H13 H13 H 0 1 N N N 222.446 -130.252 95.961 -4.590 1.477 1.160 H13 D96 43 D96 H14 H14 H 0 1 N N N 224.707 -130.981 95.917 -6.454 1.050 -0.470 H14 D96 44 D96 H15 H15 H 0 1 N N N 224.928 -130.624 97.664 -5.317 0.121 -1.475 H15 D96 45 D96 H16 H16 H 0 1 N N N 224.045 -126.980 97.305 -5.091 4.207 -1.237 H16 D96 46 D96 H17 H17 H 0 1 N N N 222.872 -132.271 97.923 -4.898 -1.420 0.422 H17 D96 47 D96 H18 H18 H 0 1 N N N 224.545 -132.898 97.737 -6.036 -0.491 1.428 H18 D96 48 D96 H19 H19 H 0 1 N N N 222.676 -134.800 95.533 -8.080 -3.207 0.051 H19 D96 49 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D96 O5 C19 DOUB N N 1 D96 O4 C17 DOUB N N 2 D96 C19 O6 SING N N 3 D96 C19 C18 SING N N 4 D96 C17 C15 SING N N 5 D96 C17 O3 SING N N 6 D96 C15 C16 SING N N 7 D96 C15 N5 SING N N 8 D96 C16 C18 SING N N 9 D96 O2 C14 DOUB N N 10 D96 N5 C14 SING N N 11 D96 C14 C11 SING N N 12 D96 C11 C12 DOUB Y N 13 D96 C11 C10 SING Y N 14 D96 C12 C13 SING Y N 15 D96 N4 C4 SING N N 16 D96 C10 C9 DOUB Y N 17 D96 N2 C4 SING N N 18 D96 N2 C3 SING N N 19 D96 O1 C3 DOUB N N 20 D96 C4 N1 DOUB N N 21 D96 C3 C2 SING N N 22 D96 C13 C8 DOUB Y N 23 D96 C9 C8 SING Y N 24 D96 C8 C7 SING N N 25 D96 N1 C1 SING N N 26 D96 C2 C1 DOUB Y N 27 D96 C2 C5 SING Y N 28 D96 C1 N3 SING Y N 29 D96 C5 C7 SING N N 30 D96 C5 C6 DOUB Y N 31 D96 N3 C6 SING Y N 32 D96 N2 H1 SING N N 33 D96 C6 H2 SING N N 34 D96 N3 H3 SING N N 35 D96 N4 H4 SING N N 36 D96 N4 H5 SING N N 37 D96 C7 H6 SING N N 38 D96 C7 H7 SING N N 39 D96 C9 H8 SING N N 40 D96 C10 H9 SING N N 41 D96 C12 H10 SING N N 42 D96 C13 H11 SING N N 43 D96 N5 H12 SING N N 44 D96 C15 H13 SING N N 45 D96 C16 H14 SING N N 46 D96 C16 H15 SING N N 47 D96 O3 H16 SING N N 48 D96 C18 H17 SING N N 49 D96 C18 H18 SING N N 50 D96 O6 H19 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D96 SMILES ACDLabs 12.01 "N=2c1ncc(c1C(NC=2N)=O)Cc3ccc(cc3)C(=O)NC(CCC(O)=O)C(O)=O" D96 InChI InChI 1.03 "InChI=1S/C19H19N5O6/c20-19-23-15-14(17(28)24-19)11(8-21-15)7-9-1-3-10(4-2-9)16(27)22-12(18(29)30)5-6-13(25)26/h1-4,8,12H,5-7H2,(H,22,27)(H,25,26)(H,29,30)(H4,20,21,23,24,28)/t12-/m1/s1" D96 InChIKey InChI 1.03 VDHBMZRBPMTLGE-GFCCVEGCSA-N D96 SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2[nH]cc(Cc3ccc(cc3)C(=O)N[C@H](CCC(O)=O)C(O)=O)c2C(=O)N1" D96 SMILES CACTVS 3.385 "NC1=Nc2[nH]cc(Cc3ccc(cc3)C(=O)N[CH](CCC(O)=O)C(O)=O)c2C(=O)N1" D96 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1Cc2c[nH]c3c2C(=O)NC(=N3)N)C(=O)N[C@H](CCC(=O)O)C(=O)O" D96 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1Cc2c[nH]c3c2C(=O)NC(=N3)N)C(=O)NC(CCC(=O)O)C(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D96 "SYSTEMATIC NAME" ACDLabs 12.01 "N-{4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}-D-glutamic acid" D96 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-[[4-[(2-azanyl-4-oxidanylidene-3,7-dihydropyrrolo[2,3-d]pyrimidin-5-yl)methyl]phenyl]carbonylamino]pentanedioic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D96 "Create component" 2019-04-15 RCSB D96 "Initial release" 2019-06-19 RCSB ##