data_D9D # _chem_comp.id D9D _chem_comp.name "(1S,2S,3S,4R,5R)-2-({[5-(hydroxymethyl)furan-2-yl]methyl}amino)-4-(morpholin-4-yl)-6,8-dioxabicyclo[3.2.1]octan-3-ol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H24 N2 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-10-23 _chem_comp.pdbx_modified_date 2020-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 340.372 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D9D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5QBL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D9D O3 O1 O 0 1 N N N -0.219 6.801 9.783 -3.708 -1.199 1.403 O3 D9D 1 D9D C4 C1 C 0 1 N N N -0.300 2.865 10.505 0.968 -1.878 0.756 C4 D9D 2 D9D C5 C2 C 0 1 N N S -1.556 4.866 9.600 -1.426 -1.527 0.669 C5 D9D 3 D9D O4 O2 O 0 1 N N N -3.184 10.193 5.925 0.014 3.791 0.046 O4 D9D 4 D9D C6 C3 C 0 1 N N S -2.950 4.385 9.063 -1.838 -1.987 -0.739 C6 D9D 5 D9D N1 N1 N 0 1 N N N -2.225 8.425 7.963 -1.451 1.394 0.041 N1 D9D 6 D9D C7 C4 C 0 1 N N N -4.068 4.682 10.042 -3.353 -2.297 -0.709 C7 D9D 7 D9D C8 C5 C 0 1 N N R -3.695 6.434 8.601 -2.948 -0.080 -1.230 C8 D9D 8 D9D C9 C6 C 0 1 N N R -2.415 7.247 8.933 -2.667 0.575 0.131 C9 D9D 9 D9D O5 O3 O 0 1 N N N -3.935 -0.052 8.150 6.192 -0.929 -1.211 O5 D9D 10 D9D C10 C7 C 0 1 N N S -1.210 6.250 8.918 -2.468 -0.525 1.178 C10 D9D 11 D9D C11 C8 C 0 1 N N N -2.351 8.006 6.525 -1.522 2.320 -1.099 C11 D9D 12 D9D C12 C9 C 0 1 N N N -2.210 9.208 5.626 -0.213 3.109 -1.191 C12 D9D 13 D9D C13 C10 C 0 1 N N N -3.003 10.657 7.255 0.089 2.919 1.178 C13 D9D 14 D9D C14 C11 C 0 1 N N N -3.187 9.543 8.256 -1.216 2.128 1.293 C14 D9D 15 D9D C15 C12 C 0 1 N N N -3.745 -0.439 9.501 5.227 0.116 -1.069 C15 D9D 16 D9D C2 C13 C 0 1 Y N N -3.125 0.657 10.297 4.156 -0.317 -0.101 C2 D9D 17 D9D C1 C14 C 0 1 Y N N -3.486 1.281 11.427 4.174 -0.123 1.230 C1 D9D 18 D9D O O4 O 0 1 Y N N -1.924 1.174 9.852 3.020 -0.957 -0.421 O D9D 19 D9D C3 C15 C 0 1 Y N N -1.554 2.143 10.763 2.305 -1.184 0.692 C3 D9D 20 D9D C C16 C 0 1 Y N N -2.485 2.228 11.722 2.981 -0.684 1.742 C D9D 21 D9D N N2 N 0 1 N N N -0.481 3.846 9.387 -0.106 -0.886 0.612 N D9D 22 D9D O1 O5 O 0 1 N N N -4.383 6.061 9.785 -3.992 -1.055 -1.054 O1 D9D 23 D9D O2 O6 O 0 1 N N N -3.336 5.224 7.956 -1.769 -0.827 -1.605 O2 D9D 24 D9D H1 H1 H 0 1 N N N 0.537 6.226 9.806 -3.657 -1.911 2.056 H1 D9D 25 D9D H2 H2 H 0 1 N N N 0.483 2.143 10.230 0.899 -2.607 -0.052 H2 D9D 26 D9D H3 H3 H 0 1 N N N 0.001 3.405 11.415 0.868 -2.386 1.714 H3 D9D 27 D9D H4 H4 H 0 1 N N N -1.659 5.046 10.680 -1.387 -2.387 1.338 H4 D9D 28 D9D H5 H5 H 0 1 N N N -2.919 3.318 8.797 -1.243 -2.829 -1.095 H5 D9D 29 D9D H7 H7 H 0 1 N N N -4.939 4.038 9.851 -3.597 -3.065 -1.443 H7 D9D 30 D9D H8 H8 H 0 1 N N N -3.729 4.543 11.079 -3.655 -2.617 0.288 H8 D9D 31 D9D H9 H9 H 0 1 N N N -4.342 7.042 7.952 -3.219 0.662 -1.980 H9 D9D 32 D9D H10 H10 H 0 1 N N N -2.515 7.648 9.952 -3.511 1.204 0.414 H10 D9D 33 D9D H11 H11 H 0 1 N N N -4.331 -0.768 7.668 6.912 -0.719 -1.821 H11 D9D 34 D9D H12 H12 H 0 1 N N N -0.845 6.094 7.892 -2.121 -0.082 2.111 H12 D9D 35 D9D H13 H13 H 0 1 N N N -3.336 7.544 6.365 -1.670 1.753 -2.019 H13 D9D 36 D9D H14 H14 H 0 1 N N N -1.562 7.278 6.287 -2.354 3.009 -0.957 H14 D9D 37 D9D H15 H15 H 0 1 N N N -2.332 8.889 4.580 -0.283 3.837 -2.000 H15 D9D 38 D9D H16 H16 H 0 1 N N N -1.208 9.642 5.762 0.612 2.425 -1.386 H16 D9D 39 D9D H17 H17 H 0 1 N N N -1.987 11.065 7.357 0.924 2.229 1.051 H17 D9D 40 D9D H18 H18 H 0 1 N N N -3.738 11.449 7.461 0.238 3.510 2.082 H18 D9D 41 D9D H19 H19 H 0 1 N N N -3.000 9.929 9.269 -2.043 2.814 1.474 H19 D9D 42 D9D H20 H20 H 0 1 N N N -4.217 9.163 8.193 -1.141 1.422 2.120 H20 D9D 43 D9D H21 H21 H 0 1 N N N -4.720 -0.694 9.941 5.717 1.013 -0.692 H21 D9D 44 D9D H22 H22 H 0 1 N N N -3.087 -1.320 9.532 4.776 0.328 -2.038 H22 D9D 45 D9D H23 H23 H 0 1 N N N -4.379 1.093 12.005 4.950 0.367 1.799 H23 D9D 46 D9D H24 H24 H 0 1 N N N -2.471 2.900 12.567 2.672 -0.705 2.776 H24 D9D 47 D9D H25 H25 H 0 1 N N N -0.702 3.332 8.558 0.002 -0.356 -0.240 H25 D9D 48 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D9D C12 O4 SING N N 1 D9D C12 C11 SING N N 2 D9D O4 C13 SING N N 3 D9D C11 N1 SING N N 4 D9D C13 C14 SING N N 5 D9D O2 C8 SING N N 6 D9D O2 C6 SING N N 7 D9D N1 C14 SING N N 8 D9D N1 C9 SING N N 9 D9D O5 C15 SING N N 10 D9D C8 C9 SING N N 11 D9D C8 O1 SING N N 12 D9D C10 C9 SING N N 13 D9D C10 C5 SING N N 14 D9D C10 O3 SING N N 15 D9D C6 C5 SING N N 16 D9D C6 C7 SING N N 17 D9D N C5 SING N N 18 D9D N C4 SING N N 19 D9D C15 C2 SING N N 20 D9D O1 C7 SING N N 21 D9D O C2 SING Y N 22 D9D O C3 SING Y N 23 D9D C2 C1 DOUB Y N 24 D9D C4 C3 SING N N 25 D9D C3 C DOUB Y N 26 D9D C1 C SING Y N 27 D9D O3 H1 SING N N 28 D9D C4 H2 SING N N 29 D9D C4 H3 SING N N 30 D9D C5 H4 SING N N 31 D9D C6 H5 SING N N 32 D9D C7 H7 SING N N 33 D9D C7 H8 SING N N 34 D9D C8 H9 SING N N 35 D9D C9 H10 SING N N 36 D9D O5 H11 SING N N 37 D9D C10 H12 SING N N 38 D9D C11 H13 SING N N 39 D9D C11 H14 SING N N 40 D9D C12 H15 SING N N 41 D9D C12 H16 SING N N 42 D9D C13 H17 SING N N 43 D9D C13 H18 SING N N 44 D9D C14 H19 SING N N 45 D9D C14 H20 SING N N 46 D9D C15 H21 SING N N 47 D9D C15 H22 SING N N 48 D9D C1 H23 SING N N 49 D9D C H24 SING N N 50 D9D N H25 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D9D SMILES ACDLabs 12.01 "OC2C(C3COC(C2N1CCOCC1)O3)NCc4oc(CO)cc4" D9D InChI InChI 1.03 "InChI=1S/C16H24N2O6/c19-8-11-2-1-10(23-11)7-17-13-12-9-22-16(24-12)14(15(13)20)18-3-5-21-6-4-18/h1-2,12-17,19-20H,3-9H2/t12-,13-,14-,15+,16-/m1/s1" D9D InChIKey InChI 1.03 QPKSUNGYGHKTGL-DGXTUMSLSA-N D9D SMILES_CANONICAL CACTVS 3.385 "OCc1oc(CN[C@@H]2[C@H]3CO[C@H](O3)[C@@H]([C@H]2O)N4CCOCC4)cc1" D9D SMILES CACTVS 3.385 "OCc1oc(CN[CH]2[CH]3CO[CH](O3)[CH]([CH]2O)N4CCOCC4)cc1" D9D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(oc1CN[C@@H]2[C@H]3CO[C@H](O3)[C@@H]([C@H]2O)N4CCOCC4)CO" D9D SMILES "OpenEye OEToolkits" 2.0.6 "c1cc(oc1CNC2C3COC(O3)C(C2O)N4CCOCC4)CO" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D9D "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S,3S,4R,5R)-2-({[5-(hydroxymethyl)furan-2-yl]methyl}amino)-4-(morpholin-4-yl)-6,8-dioxabicyclo[3.2.1]octan-3-ol (non-preferred name)" D9D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(1~{S},2~{S},3~{S},4~{R},5~{R})-2-[[5-(hydroxymethyl)furan-2-yl]methylamino]-4-morpholin-4-yl-6,8-dioxabicyclo[3.2.1]octan-3-ol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D9D "Create component" 2017-10-23 RCSB D9D "Initial release" 2020-04-22 RCSB ##