data_D9P # _chem_comp.id D9P _chem_comp.name 1-desthiobiotinylpyrene _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H26 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-03-15 _chem_comp.pdbx_modified_date 2016-10-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 398.497 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D9P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5IRW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D9P O11 O1 O 0 1 N N N 17.703 -3.989 28.974 0.484 -1.240 -0.641 O11 D9P 1 D9P C11 C1 C 0 1 N N N 18.438 -3.781 29.936 0.560 -0.069 -0.356 C11 D9P 2 D9P C10 C2 C 0 1 N N N 18.220 -2.533 30.808 -0.694 0.756 -0.221 C10 D9P 3 D9P C9 C3 C 0 1 N N N 17.789 -1.392 29.868 -1.915 -0.124 -0.495 C9 D9P 4 D9P C8 C4 C 0 1 N N N 16.305 -1.128 29.682 -3.188 0.714 -0.359 C8 D9P 5 D9P C7 C5 C 0 1 N N N 15.883 -0.994 28.229 -4.410 -0.166 -0.632 C7 D9P 6 D9P C2 C6 C 0 1 N N N 15.760 0.413 27.747 -5.682 0.672 -0.496 C2 D9P 7 D9P C4 C7 C 0 1 N N R 14.465 0.700 26.990 -6.904 -0.208 -0.769 C4 D9P 8 D9P C5 C8 C 0 1 N N S 14.546 1.816 25.949 -8.201 0.618 -0.660 C5 D9P 9 D9P C6 C9 C 0 1 N N N 15.695 2.795 26.109 -7.883 2.073 -0.311 C6 D9P 10 D9P N1 N1 N 0 1 N N N 13.254 2.452 26.132 -8.938 -0.027 0.436 N1 D9P 11 D9P N2 N2 N 0 1 N N N 13.469 1.226 27.905 -7.048 -1.230 0.277 N2 D9P 12 D9P C3 C10 C 0 1 N N N 12.694 2.154 27.327 -8.219 -1.055 0.905 C3 D9P 13 D9P O3 O2 O 0 1 N N N 11.678 2.626 27.806 -8.594 -1.766 1.817 O3 D9P 14 D9P C1 C11 C 0 1 Y N N 19.465 -4.820 30.298 1.877 0.551 -0.133 C1 D9P 15 D9P C16 C12 C 0 1 Y N N 20.448 -5.195 29.439 3.099 -0.274 -0.141 C16 D9P 16 D9P C15 C13 C 0 1 Y N N 21.288 -6.287 29.848 4.386 0.409 0.088 C15 D9P 17 D9P C17 C14 C 0 1 Y N N 20.734 -4.605 28.242 3.076 -1.570 -0.342 C17 D9P 18 D9P C18 C15 C 0 1 Y N N 21.813 -5.059 27.471 4.337 -2.341 -0.338 C18 D9P 19 D9P C19 C16 C 0 1 Y N N 22.644 -6.124 27.817 5.480 -1.729 -0.133 C19 D9P 20 D9P C20 C17 C 0 1 Y N N 22.365 -6.731 29.050 5.499 -0.271 0.091 C20 D9P 21 D9P C24 C18 C 0 1 Y N N 23.729 -6.574 27.008 6.770 -2.439 -0.118 C24 D9P 22 D9P C25 C19 C 0 1 Y N N 24.550 -7.591 27.422 7.878 -1.761 0.092 C25 D9P 23 D9P C26 C20 C 0 1 Y N N 24.263 -8.211 28.649 7.891 -0.310 0.316 C26 D9P 24 D9P C21 C21 C 0 1 Y N N 23.187 -7.799 29.463 6.790 0.404 0.319 C21 D9P 25 D9P C22 C22 C 0 1 Y N N 22.936 -8.436 30.688 6.808 1.859 0.543 C22 D9P 26 D9P C23 C23 C 0 1 Y N N 21.897 -8.020 31.483 5.682 2.547 0.539 C23 D9P 27 D9P C14 C24 C 0 1 Y N N 21.066 -6.953 31.085 4.397 1.866 0.312 C14 D9P 28 D9P C13 C25 C 0 1 Y N N 20.002 -6.562 31.903 3.259 2.521 0.302 C13 D9P 29 D9P C12 C26 C 0 1 Y N N 19.203 -5.531 31.494 1.976 1.847 0.069 C12 D9P 30 D9P H1 H1 H 0 1 N N N 19.154 -2.265 31.323 -0.756 1.160 0.789 H1 D9P 31 D9P H2 H2 H 0 1 N N N 17.433 -2.726 31.552 -0.668 1.575 -0.940 H2 D9P 32 D9P H3 H3 H 0 1 N N N 18.206 -1.614 28.875 -1.853 -0.528 -1.505 H3 D9P 33 D9P H4 H4 H 0 1 N N N 18.238 -0.465 30.255 -1.941 -0.943 0.223 H4 D9P 34 D9P H5 H5 H 0 1 N N N 16.051 -0.194 30.204 -3.250 1.118 0.652 H5 D9P 35 D9P H6 H6 H 0 1 N N N 15.746 -1.962 30.130 -3.162 1.533 -1.077 H6 D9P 36 D9P H7 H7 H 0 1 N N N 14.906 -1.485 28.108 -4.347 -0.570 -1.643 H7 D9P 37 D9P H8 H8 H 0 1 N N N 16.630 -1.507 27.606 -4.435 -0.985 0.086 H8 D9P 38 D9P H9 H9 H 0 1 N N N 16.606 0.624 27.077 -5.745 1.076 0.515 H9 D9P 39 D9P H10 H10 H 0 1 N N N 15.807 1.082 28.619 -5.657 1.492 -1.214 H10 D9P 40 D9P H11 H11 H 0 1 N N N 14.104 -0.223 26.513 -6.826 -0.674 -1.752 H11 D9P 41 D9P H12 H12 H 0 1 N N N 14.600 1.363 24.948 -8.768 0.564 -1.590 H12 D9P 42 D9P H13 H13 H 0 1 N N N 16.649 2.268 25.962 -7.295 2.106 0.606 H13 D9P 43 D9P H14 H14 H 0 1 N N N 15.600 3.597 25.362 -7.315 2.526 -1.123 H14 D9P 44 D9P H15 H15 H 0 1 N N N 15.668 3.230 27.119 -8.812 2.624 -0.167 H15 D9P 45 D9P H16 H16 H 0 1 N N N 12.825 3.045 25.450 -9.807 0.248 0.767 H16 D9P 46 D9P H17 H17 H 0 1 N N N 13.372 0.931 28.855 -6.399 -1.922 0.481 H17 D9P 47 D9P H18 H18 H 0 1 N N N 20.127 -3.785 27.888 2.136 -2.074 -0.509 H18 D9P 48 D9P H19 H19 H 0 1 N N N 22.015 -4.547 26.542 4.319 -3.408 -0.503 H19 D9P 49 D9P H20 H20 H 0 1 N N N 23.907 -6.105 26.052 6.807 -3.507 -0.278 H20 D9P 50 D9P H21 H21 H 0 1 N N N 25.392 -7.906 26.823 8.817 -2.294 0.101 H21 D9P 51 D9P H22 H22 H 0 1 N N N 24.886 -9.029 28.980 8.836 0.186 0.483 H22 D9P 52 D9P H23 H23 H 0 1 N N N 23.562 -9.256 31.006 7.747 2.365 0.711 H23 D9P 53 D9P H24 H24 H 0 1 N N N 21.714 -8.516 32.425 5.704 3.614 0.705 H24 D9P 54 D9P H25 H25 H 0 1 N N N 19.815 -7.065 32.840 3.269 3.589 0.466 H25 D9P 55 D9P H26 H26 H 0 1 N N N 18.352 -5.252 32.097 1.073 2.441 0.068 H26 D9P 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D9P C5 C6 SING N N 1 D9P C5 N1 SING N N 2 D9P C5 C4 SING N N 3 D9P N1 C3 SING N N 4 D9P C4 C2 SING N N 5 D9P C4 N2 SING N N 6 D9P C24 C25 DOUB Y N 7 D9P C24 C19 SING Y N 8 D9P C3 O3 DOUB N N 9 D9P C3 N2 SING N N 10 D9P C25 C26 SING Y N 11 D9P C18 C19 DOUB Y N 12 D9P C18 C17 SING Y N 13 D9P C2 C7 SING N N 14 D9P C19 C20 SING Y N 15 D9P C7 C8 SING N N 16 D9P C17 C16 DOUB Y N 17 D9P C26 C21 DOUB Y N 18 D9P O11 C11 DOUB N N 19 D9P C20 C21 SING Y N 20 D9P C20 C15 DOUB Y N 21 D9P C16 C15 SING Y N 22 D9P C16 C1 SING Y N 23 D9P C21 C22 SING Y N 24 D9P C8 C9 SING N N 25 D9P C15 C14 SING Y N 26 D9P C9 C10 SING N N 27 D9P C11 C1 SING N N 28 D9P C11 C10 SING N N 29 D9P C1 C12 DOUB Y N 30 D9P C22 C23 DOUB Y N 31 D9P C14 C23 SING Y N 32 D9P C14 C13 DOUB Y N 33 D9P C12 C13 SING Y N 34 D9P C10 H1 SING N N 35 D9P C10 H2 SING N N 36 D9P C9 H3 SING N N 37 D9P C9 H4 SING N N 38 D9P C8 H5 SING N N 39 D9P C8 H6 SING N N 40 D9P C7 H7 SING N N 41 D9P C7 H8 SING N N 42 D9P C2 H9 SING N N 43 D9P C2 H10 SING N N 44 D9P C4 H11 SING N N 45 D9P C5 H12 SING N N 46 D9P C6 H13 SING N N 47 D9P C6 H14 SING N N 48 D9P C6 H15 SING N N 49 D9P N1 H16 SING N N 50 D9P N2 H17 SING N N 51 D9P C17 H18 SING N N 52 D9P C18 H19 SING N N 53 D9P C24 H20 SING N N 54 D9P C25 H21 SING N N 55 D9P C26 H22 SING N N 56 D9P C22 H23 SING N N 57 D9P C23 H24 SING N N 58 D9P C13 H25 SING N N 59 D9P C12 H26 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D9P SMILES ACDLabs 12.01 "O=C(c1ccc4c2c1ccc3c2c(ccc3)cc4)CCCCCC5NC(NC5C)=O" D9P InChI InChI 1.03 "InChI=1S/C26H26N2O2/c1-16-22(28-26(30)27-16)8-3-2-4-9-23(29)20-14-12-19-11-10-17-6-5-7-18-13-15-21(20)25(19)24(17)18/h5-7,10-16,22H,2-4,8-9H2,1H3,(H2,27,28,30)/t16-,22+/m0/s1" D9P InChIKey InChI 1.03 GEJQOLRONNVYHQ-KSFYIVLOSA-N D9P SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1NC(=O)N[C@@H]1CCCCCC(=O)c2ccc3ccc4cccc5ccc2c3c45" D9P SMILES CACTVS 3.385 "C[CH]1NC(=O)N[CH]1CCCCCC(=O)c2ccc3ccc4cccc5ccc2c3c45" D9P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C[C@H]1[C@H](NC(=O)N1)CCCCCC(=O)c2ccc3ccc4cccc5c4c3c2cc5" D9P SMILES "OpenEye OEToolkits" 2.0.4 "CC1C(NC(=O)N1)CCCCCC(=O)c2ccc3ccc4cccc5c4c3c2cc5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier D9P "SYSTEMATIC NAME" ACDLabs 12.01 "(4S,5R)-4-methyl-5-[6-oxo-6-(pyren-1-yl)hexyl]imidazolidin-2-one" D9P "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(4~{S},5~{R})-4-methyl-5-(6-oxidanylidene-6-pyren-1-yl-hexyl)imidazolidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D9P "Create component" 2016-03-15 EBI D9P "Other modification" 2016-03-15 EBI D9P "Other modification" 2016-03-21 EBI D9P "Initial release" 2016-10-12 RCSB #