data_D9U # _chem_comp.id D9U _chem_comp.name "1-[(10~{S},17~{S},20~{S})-17,20-bis(4-azanylbutyl)-4,9,16,19,22-pentakis(oxidanylidene)-3,8,15,18,21-pentazabicyclo[22.2.2]octacosa-1(27),24(28),25-trien-10-yl]guanidine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H54 N10 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-07-25 _chem_comp.pdbx_modified_date 2020-06-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 658.835 _chem_comp.one_letter_code ? _chem_comp.three_letter_code D9U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6KK2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal D9U C10 C1 C 0 1 N N N -5.579 10.015 -21.082 5.813 1.932 -0.009 C10 D9U 1 D9U C20 C2 C 0 1 N N N -7.614 5.281 -17.741 3.753 -3.648 0.166 C20 D9U 2 D9U C21 C3 C 0 1 N N N -9.096 4.789 -17.842 2.556 -3.768 -0.779 C21 D9U 3 D9U C22 C4 C 0 1 N N N -10.001 5.559 -16.836 1.645 -4.904 -0.308 C22 D9U 4 D9U C24 C5 C 0 1 N N N -8.657 5.491 -14.672 -0.620 -4.091 -0.246 C24 D9U 5 D9U C26 C6 C 0 1 N N S -8.368 4.802 -13.348 -1.986 -3.888 -0.848 C26 D9U 6 D9U C28 C7 C 0 1 N N N -8.308 4.857 -10.867 -0.941 -2.069 -2.205 C28 D9U 7 D9U C01 C8 C 0 1 Y N N -3.119 7.675 -16.197 -2.130 4.117 0.834 C01 D9U 8 D9U C02 C9 C 0 1 Y N N -2.659 8.196 -17.399 -0.982 4.864 1.027 C02 D9U 9 D9U C03 C10 C 0 1 Y N N -1.357 7.913 -17.793 -0.156 5.151 -0.043 C03 D9U 10 D9U C04 C11 C 0 1 N N N -0.788 8.458 -19.097 1.090 5.972 0.165 C04 D9U 11 D9U C06 C12 C 0 1 N N N -2.282 8.642 -21.099 2.893 4.379 0.206 C06 D9U 12 D9U C08 C13 C 0 1 N N N -3.331 9.360 -21.959 4.056 3.659 -0.427 C08 D9U 13 D9U C09 C14 C 0 1 N N N -4.091 10.408 -21.145 4.839 2.908 0.652 C09 D9U 14 D9U C12 C15 C 0 1 N N N -5.810 7.967 -19.621 5.536 -0.465 -0.126 C12 D9U 15 D9U C14 C16 C 0 1 N N S -5.993 6.442 -19.465 5.429 -1.827 0.509 C14 D9U 16 D9U C16 C17 C 0 1 N N N -3.728 5.435 -19.125 5.056 -1.988 2.935 C16 D9U 17 D9U C19 C18 C 0 1 N N N -7.432 6.181 -18.982 4.850 -2.818 -0.503 C19 D9U 18 D9U C27 C19 C 0 1 N N N -8.702 5.645 -12.135 -1.845 -3.302 -2.255 C27 D9U 19 D9U C29 C20 C 0 1 N N N -9.209 3.667 -10.537 -0.922 -1.395 -3.578 C29 D9U 20 D9U C30 C21 C 0 1 N N N -9.153 3.503 -9.004 -0.018 -0.161 -3.529 C30 D9U 21 D9U C33 C22 C 0 1 N N N -6.348 3.156 -13.542 -3.238 -1.836 -0.602 C33 D9U 22 D9U C35 C23 C 0 1 N N S -4.812 3.019 -13.441 -4.015 -0.840 0.221 C35 D9U 23 D9U C36 C24 C 0 1 N N N -4.507 2.162 -12.207 -5.410 -1.396 0.515 C36 D9U 24 D9U C37 C25 C 0 1 N N N -3.021 2.096 -11.835 -6.152 -0.441 1.452 C37 D9U 25 D9U C38 C26 C 0 1 N N N -2.800 0.704 -11.247 -7.547 -0.997 1.746 C38 D9U 26 D9U C39 C27 C 0 1 N N N -1.319 0.355 -11.237 -8.288 -0.042 2.684 C39 D9U 27 D9U C42 C28 C 0 1 N N N -3.427 4.923 -14.363 -3.591 1.525 0.050 C42 D9U 28 D9U C44 C29 C 0 1 N N N -2.774 6.302 -14.077 -3.706 2.855 -0.648 C44 D9U 29 D9U C45 C30 C 0 1 Y N N -2.275 6.885 -15.404 -2.450 3.658 -0.430 C45 D9U 30 D9U C46 C31 C 0 1 Y N N -0.977 6.600 -15.800 -1.620 3.941 -1.499 C46 D9U 31 D9U C47 C32 C 0 1 Y N N -0.520 7.125 -17.006 -0.474 4.687 -1.306 C47 D9U 32 D9U N05 N1 N 0 1 N N N -1.792 9.198 -19.835 2.216 5.309 -0.530 N05 D9U 33 D9U N11 N2 N 0 1 N N N -5.765 8.572 -20.944 5.714 0.625 0.670 N11 D9U 34 D9U N15 N3 N 0 1 N N N -4.995 5.923 -18.562 4.550 -1.753 1.678 N15 D9U 35 D9U N17 N4 N 0 1 N N N -2.836 4.980 -18.365 4.230 -1.919 4.032 N17 D9U 36 D9U N18 N5 N 0 1 N N N -3.485 5.464 -20.567 6.318 -2.277 3.086 N18 D9U 37 D9U N23 N6 N 0 1 N N N -9.720 4.959 -15.517 0.328 -4.757 -0.968 N23 D9U 38 D9U N31 N7 N 0 1 N N N -8.776 2.176 -8.517 0.001 0.486 -4.847 N31 D9U 39 D9U N32 N8 N 0 1 N N N -6.929 4.500 -13.309 -2.747 -2.952 0.004 N32 D9U 40 D9U N40 N9 N 0 1 N N N -0.833 0.593 -9.888 -9.628 -0.575 2.966 N40 D9U 41 D9U N41 N10 N 0 1 N N N -4.172 4.295 -13.271 -4.135 0.421 -0.544 N41 D9U 42 D9U O07 O1 O 0 1 N N N -1.848 7.613 -21.490 2.564 4.136 1.347 O07 D9U 43 D9U O13 O2 O 0 1 N N N -5.705 8.686 -18.675 5.465 -0.341 -1.331 O13 D9U 44 D9U O25 O3 O 0 1 N N N -8.004 6.416 -15.023 -0.366 -3.669 0.862 O25 D9U 45 D9U O34 O4 O 0 1 N N N -7.020 2.197 -13.783 -3.053 -1.645 -1.785 O34 D9U 46 D9U O43 O5 O 0 1 N N N -3.346 4.399 -15.440 -3.026 1.436 1.120 O43 D9U 47 D9U H101 H1 H 0 0 N N N -6.041 10.516 -20.218 5.556 1.816 -1.062 H101 D9U 48 D9U H102 H2 H 0 0 N N N -6.073 10.349 -22.007 6.831 2.313 0.079 H102 D9U 49 D9U H202 H3 H 0 0 N N N -6.917 4.430 -17.770 3.440 -3.160 1.089 H202 D9U 50 D9U H201 H4 H 0 0 N N N -7.455 5.854 -16.816 4.138 -4.642 0.393 H201 D9U 51 D9U H211 H5 H 0 0 N N N -9.465 4.961 -18.864 1.998 -2.832 -0.778 H211 D9U 52 D9U H212 H6 H 0 0 N N N -9.136 3.714 -17.614 2.909 -3.980 -1.788 H212 D9U 53 D9U H221 H7 H 0 0 N N N -9.749 6.630 -16.833 2.086 -5.863 -0.581 H221 D9U 54 D9U H222 H8 H 0 0 N N N -11.062 5.433 -17.098 1.521 -4.850 0.773 H222 D9U 55 D9U H261 H9 H 0 0 N N N -8.942 3.865 -13.301 -2.509 -4.843 -0.899 H261 D9U 56 D9U H282 H10 H 0 0 N N N -7.283 4.481 -11.004 -1.322 -1.368 -1.462 H282 D9U 57 D9U H281 H11 H 0 0 N N N -8.333 5.550 -10.013 0.071 -2.370 -1.934 H281 D9U 58 D9U H011 H12 H 0 0 N N N -4.129 7.879 -15.872 -2.775 3.892 1.670 H011 D9U 59 D9U H021 H13 H 0 0 N N N -3.300 8.809 -18.015 -0.731 5.222 2.015 H021 D9U 60 D9U H042 H14 H 0 0 N N N -0.435 7.618 -19.714 0.944 6.971 -0.246 H042 D9U 61 D9U H041 H15 H 0 0 N N N 0.056 9.126 -18.869 1.308 6.042 1.231 H041 D9U 62 D9U H082 H16 H 0 0 N N N -4.046 8.619 -22.346 3.685 2.949 -1.166 H082 D9U 63 D9U H081 H17 H 0 0 N N N -2.826 9.857 -22.801 4.710 4.382 -0.913 H081 D9U 64 D9U H091 H18 H 0 0 N N N -3.679 10.453 -20.126 4.145 2.355 1.286 H091 D9U 65 D9U H092 H19 H 0 0 N N N -3.990 11.392 -21.626 5.396 3.622 1.259 H092 D9U 66 D9U H141 H20 H 0 0 N N N -5.872 5.978 -20.455 6.419 -2.162 0.820 H141 D9U 67 D9U H192 H21 H 0 0 N N N -7.884 7.157 -18.751 5.641 -3.478 -0.858 H192 D9U 68 D9U H191 H22 H 0 0 N N N -7.979 5.711 -19.813 4.428 -2.270 -1.346 H191 D9U 69 D9U H271 H23 H 0 0 N N N -8.140 6.590 -12.174 -1.405 -4.048 -2.916 H271 D9U 70 D9U H272 H24 H 0 0 N N N -9.781 5.860 -12.118 -2.828 -3.017 -2.630 H272 D9U 71 D9U H291 H25 H 0 0 N N N -10.241 3.867 -10.863 -0.540 -2.095 -4.321 H291 D9U 72 D9U H292 H26 H 0 0 N N N -8.838 2.758 -11.032 -1.934 -1.093 -3.849 H292 D9U 73 D9U H302 H27 H 0 0 N N N -8.421 4.226 -8.614 -0.399 0.539 -2.786 H302 D9U 74 D9U H301 H28 H 0 0 N N N -10.150 3.739 -8.603 0.994 -0.463 -3.258 H301 D9U 75 D9U H351 H29 H 0 0 N N N -4.434 2.511 -14.340 -3.490 -0.651 1.157 H351 D9U 76 D9U H361 H30 H 0 0 N N N -5.058 2.581 -11.352 -5.965 -1.495 -0.418 H361 D9U 77 D9U H362 H31 H 0 0 N N N -4.859 1.138 -12.403 -5.319 -2.373 0.989 H362 D9U 78 D9U H372 H32 H 0 0 N N N -2.396 2.238 -12.729 -5.596 -0.342 2.385 H372 D9U 79 D9U H371 H33 H 0 0 N N N -2.778 2.869 -11.091 -6.242 0.536 0.978 H371 D9U 80 D9U H381 H34 H 0 0 N N N -3.183 0.682 -10.216 -8.102 -1.095 0.814 H381 D9U 81 D9U H382 H35 H 0 0 N N N -3.341 -0.035 -11.855 -7.456 -1.974 2.220 H382 D9U 82 D9U H391 H36 H 0 0 N N N -1.179 -0.702 -11.508 -7.733 0.057 3.616 H391 D9U 83 D9U H392 H37 H 0 0 N N N -0.776 0.992 -11.951 -8.379 0.936 2.209 H392 D9U 84 D9U H441 H38 H 0 0 N N N -1.928 6.176 -13.385 -3.851 2.691 -1.716 H441 D9U 85 D9U H442 H39 H 0 0 N N N -3.516 6.979 -13.629 -4.559 3.402 -0.246 H442 D9U 86 D9U H461 H40 H 0 0 N N N -0.335 5.985 -15.187 -1.868 3.578 -2.486 H461 D9U 87 D9U H471 H41 H 0 0 N N N 0.489 6.920 -17.333 0.174 4.909 -2.142 H471 D9U 88 D9U H051 H42 H 0 0 N N N -2.142 10.068 -19.489 2.457 5.521 -1.445 H051 D9U 89 D9U H111 H43 H 0 0 N N N -5.861 8.000 -21.759 5.774 0.546 1.635 H111 D9U 90 D9U H151 H44 H 0 0 N N N -5.161 5.896 -17.576 3.611 -1.538 1.566 H151 D9U 91 D9U H1 H45 H 0 1 N N N -2.988 4.950 -17.377 3.291 -1.703 3.920 H1 D9U 92 D9U H171 H46 H 0 0 N N N -1.974 4.648 -18.748 4.587 -2.085 4.919 H171 D9U 93 D9U H182 H47 H 0 0 N N N -2.585 5.098 -20.803 6.674 -2.443 3.973 H182 D9U 94 D9U H231 H48 H 0 0 N N N -10.263 4.181 -15.200 0.150 -5.110 -1.854 H231 D9U 95 D9U H2 H49 H 0 1 N N N -8.770 2.177 -7.517 -0.934 0.717 -5.150 H2 D9U 96 D9U H312 H50 H 0 0 N N N -9.436 1.501 -8.846 0.591 1.304 -4.841 H312 D9U 97 D9U H321 H52 H 0 0 N N N -6.300 5.252 -13.112 -2.889 -3.124 0.947 H321 D9U 98 D9U H401 H53 H 0 0 N N N 0.142 0.374 -9.841 -10.138 0.038 3.584 H401 D9U 99 D9U H3 H54 H 0 1 N N N -0.970 1.554 -9.649 -10.140 -0.737 2.112 H3 D9U 100 D9U H411 H56 H 0 0 N N N -4.237 4.763 -12.389 -4.570 0.461 -1.410 H411 D9U 101 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal D9U C08 C09 SING N N 1 D9U C08 C06 SING N N 2 D9U O07 C06 DOUB N N 3 D9U C09 C10 SING N N 4 D9U C06 N05 SING N N 5 D9U C10 N11 SING N N 6 D9U N11 C12 SING N N 7 D9U N18 C16 DOUB N N 8 D9U N05 C04 SING N N 9 D9U C12 C14 SING N N 10 D9U C12 O13 DOUB N N 11 D9U C14 C19 SING N N 12 D9U C14 N15 SING N N 13 D9U C16 N15 SING N N 14 D9U C16 N17 SING N N 15 D9U C04 C03 SING N N 16 D9U C19 C20 SING N N 17 D9U C21 C20 SING N N 18 D9U C21 C22 SING N N 19 D9U C03 C02 DOUB Y N 20 D9U C03 C47 SING Y N 21 D9U C02 C01 SING Y N 22 D9U C47 C46 DOUB Y N 23 D9U C22 N23 SING N N 24 D9U C01 C45 DOUB Y N 25 D9U C46 C45 SING Y N 26 D9U N23 C24 SING N N 27 D9U O43 C42 DOUB N N 28 D9U C45 C44 SING N N 29 D9U O25 C24 DOUB N N 30 D9U C24 C26 SING N N 31 D9U C42 C44 SING N N 32 D9U C42 N41 SING N N 33 D9U O34 C33 DOUB N N 34 D9U C33 C35 SING N N 35 D9U C33 N32 SING N N 36 D9U C35 N41 SING N N 37 D9U C35 C36 SING N N 38 D9U C26 N32 SING N N 39 D9U C26 C27 SING N N 40 D9U C36 C37 SING N N 41 D9U C27 C28 SING N N 42 D9U C37 C38 SING N N 43 D9U C38 C39 SING N N 44 D9U C39 N40 SING N N 45 D9U C28 C29 SING N N 46 D9U C29 C30 SING N N 47 D9U C30 N31 SING N N 48 D9U C10 H101 SING N N 49 D9U C10 H102 SING N N 50 D9U C20 H202 SING N N 51 D9U C20 H201 SING N N 52 D9U C21 H211 SING N N 53 D9U C21 H212 SING N N 54 D9U C22 H221 SING N N 55 D9U C22 H222 SING N N 56 D9U C26 H261 SING N N 57 D9U C28 H282 SING N N 58 D9U C28 H281 SING N N 59 D9U C01 H011 SING N N 60 D9U C02 H021 SING N N 61 D9U C04 H042 SING N N 62 D9U C04 H041 SING N N 63 D9U C08 H082 SING N N 64 D9U C08 H081 SING N N 65 D9U C09 H091 SING N N 66 D9U C09 H092 SING N N 67 D9U C14 H141 SING N N 68 D9U C19 H192 SING N N 69 D9U C19 H191 SING N N 70 D9U C27 H271 SING N N 71 D9U C27 H272 SING N N 72 D9U C29 H291 SING N N 73 D9U C29 H292 SING N N 74 D9U C30 H302 SING N N 75 D9U C30 H301 SING N N 76 D9U C35 H351 SING N N 77 D9U C36 H361 SING N N 78 D9U C36 H362 SING N N 79 D9U C37 H372 SING N N 80 D9U C37 H371 SING N N 81 D9U C38 H381 SING N N 82 D9U C38 H382 SING N N 83 D9U C39 H391 SING N N 84 D9U C39 H392 SING N N 85 D9U C44 H441 SING N N 86 D9U C44 H442 SING N N 87 D9U C46 H461 SING N N 88 D9U C47 H471 SING N N 89 D9U N05 H051 SING N N 90 D9U N11 H111 SING N N 91 D9U N15 H151 SING N N 92 D9U N17 H1 SING N N 93 D9U N17 H171 SING N N 94 D9U N18 H182 SING N N 95 D9U N23 H231 SING N N 96 D9U N31 H2 SING N N 97 D9U N31 H312 SING N N 98 D9U N32 H321 SING N N 99 D9U N40 H401 SING N N 100 D9U N40 H3 SING N N 101 D9U N41 H411 SING N N 102 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor D9U InChI InChI 1.03 "InChI=1S/C32H54N10O5/c33-16-4-1-8-24-29(45)37-18-6-3-10-25(42-32(35)36)30(46)38-19-7-11-27(43)39-21-23-14-12-22(13-15-23)20-28(44)40-26(31(47)41-24)9-2-5-17-34/h12-15,24-26H,1-11,16-21,33-34H2,(H,37,45)(H,38,46)(H,39,43)(H,40,44)(H,41,47)(H4,35,36,42)/t24-,25-,26-/m0/s1" D9U InChIKey InChI 1.03 NYYOECQKOMJJPT-GSDHBNRESA-N D9U SMILES_CANONICAL CACTVS 3.385 "NCCCC[C@@H]1NC(=O)[C@H](CCCCN)NC(=O)Cc2ccc(CNC(=O)CCCNC(=O)[C@H](CCCCNC1=O)NC(N)=N)cc2" D9U SMILES CACTVS 3.385 "NCCCC[CH]1NC(=O)[CH](CCCCN)NC(=O)Cc2ccc(CNC(=O)CCCNC(=O)[CH](CCCCNC1=O)NC(N)=N)cc2" D9U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/N[C@H]1CCCCNC(=O)[C@@H](NC(=O)[C@@H](NC(=O)Cc2ccc(cc2)CNC(=O)CCCNC1=O)CCCCN)CCCCN" D9U SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2ccc1CC(=O)NC(C(=O)NC(C(=O)NCCCCC(C(=O)NCCCC(=O)NC2)NC(=N)N)CCCCN)CCCCN" # _pdbx_chem_comp_identifier.comp_id D9U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(10~{S},17~{S},20~{S})-17,20-bis(4-azanylbutyl)-4,9,16,19,22-pentakis(oxidanylidene)-3,8,15,18,21-pentazabicyclo[22.2.2]octacosa-1(27),24(28),25-trien-10-yl]guanidine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site D9U "Create component" 2019-07-25 PDBJ D9U "Initial release" 2020-06-17 RCSB ##