data_DA2 # _chem_comp.id DA2 _chem_comp.name NG,NG-DIMETHYL-L-ARGININE _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C8 H18 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ADMA _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-27 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 202.254 _chem_comp.one_letter_code R _chem_comp.three_letter_code DA2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7NSE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DA2 C1 C1 C 0 1 N N N N N N 8.598 10.722 30.463 5.583 -0.411 0.131 C1 DA2 1 DA2 C2 C2 C 0 1 N N N N N N 6.373 10.928 29.252 4.267 1.633 -0.597 C2 DA2 2 DA2 N N N 0 1 N N N Y Y N 7.914 15.793 35.383 -3.027 1.687 0.666 N DA2 3 DA2 CA CA C 0 1 N N S Y N N 8.433 16.305 34.086 -3.010 0.550 -0.265 CA DA2 4 DA2 CB CB C 0 1 N N N N N N 8.365 15.206 33.027 -1.827 -0.361 0.064 CB DA2 5 DA2 CG CG C 0 1 N N N N N N 9.119 13.946 33.407 -0.518 0.390 -0.192 CG DA2 6 DA2 CD CD C 0 1 N N N N N N 8.763 12.800 32.479 0.666 -0.521 0.137 CD DA2 7 DA2 NE NE N 0 1 N N N N N N 7.312 12.624 32.370 1.918 0.198 -0.108 NE DA2 8 DA2 CZ CZ C 0 1 N N N N N N 6.643 11.929 31.442 3.124 -0.424 0.119 CZ DA2 9 DA2 NH2 NH2 N 0 1 N N N N N N 5.317 11.924 31.524 3.152 -1.653 0.552 NH2 DA2 10 DA2 NH1 NH1 N 0 1 N N N N N N 7.214 11.262 30.420 4.299 0.251 -0.111 NH1 DA2 11 DA2 C C C 0 1 N N N Y N Y 7.634 17.515 33.613 -4.295 -0.227 -0.131 C DA2 12 DA2 O O O 0 1 N N N Y N Y 6.500 17.703 34.106 -4.968 -0.115 0.866 O DA2 13 DA2 OXT OXT O 0 1 N Y N Y N Y 8.149 18.255 32.747 -4.692 -1.042 -1.121 OXT DA2 14 DA2 HC11 HC11 H 0 0 N N N N N N 9.094 11.055 31.387 5.895 -0.234 1.160 HC11 DA2 15 DA2 HC12 HC12 H 0 0 N N N N N N 8.563 9.623 30.442 5.477 -1.483 -0.038 HC12 DA2 16 DA2 HC13 HC13 H 0 0 N N N N N N 9.161 11.088 29.592 6.333 -0.009 -0.550 HC13 DA2 17 DA2 HC21 HC21 H 0 0 N N N N N N 5.384 11.397 29.365 4.266 1.634 -1.687 HC21 DA2 18 DA2 HC22 HC22 H 0 0 N N N N N N 6.853 11.302 28.336 3.367 2.126 -0.232 HC22 DA2 19 DA2 HC23 HC23 H 0 0 N N N N N N 6.255 9.836 29.185 5.146 2.166 -0.234 HC23 DA2 20 DA2 H HN1 H 0 1 N N N Y Y N 7.962 16.517 36.071 -3.761 2.337 0.430 HN1 DA2 21 DA2 H2 HN2 H 0 1 N Y N Y Y N 6.964 15.502 35.270 -3.116 1.371 1.620 HN2 DA2 22 DA2 HA HCA H 0 1 N N N Y N N 9.484 16.606 34.212 -2.913 0.919 -1.286 HCA DA2 23 DA2 HCB1 HCB1 H 0 0 N N N N N N 7.309 14.944 32.866 -1.876 -0.658 1.111 HCB1 DA2 24 DA2 HCB2 HCB2 H 0 0 N N N N N N 8.792 15.598 32.092 -1.865 -1.249 -0.568 HCB2 DA2 25 DA2 HCG1 HCG1 H 0 0 N N N N N N 10.200 14.140 33.341 -0.468 0.687 -1.239 HCG1 DA2 26 DA2 HCG2 HCG2 H 0 0 N N N N N N 8.858 13.668 34.439 -0.480 1.278 0.440 HCG2 DA2 27 DA2 HCD1 HCD1 H 0 0 N N N N N N 9.173 13.009 31.480 0.616 -0.818 1.184 HCD1 DA2 28 DA2 HCD2 HCD2 H 0 0 N N N N N N 9.207 11.873 32.871 0.627 -1.409 -0.495 HCD2 DA2 29 DA2 HNE HNE H 0 1 N N N N N N 6.758 13.075 33.070 1.898 1.113 -0.430 HNE DA2 30 DA2 HNH2 HNH2 H 0 0 N N N N N N 4.898 11.401 30.782 4.002 -2.092 0.711 HNH2 DA2 31 DA2 HXT HXT H 0 1 N Y N Y N Y 7.549 18.961 32.536 -5.522 -1.520 -0.989 HXT DA2 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA2 C1 NH1 SING N N 1 DA2 C1 HC11 SING N N 2 DA2 C1 HC12 SING N N 3 DA2 C1 HC13 SING N N 4 DA2 C2 NH1 SING N N 5 DA2 C2 HC21 SING N N 6 DA2 C2 HC22 SING N N 7 DA2 C2 HC23 SING N N 8 DA2 N CA SING N N 9 DA2 N H SING N N 10 DA2 N H2 SING N N 11 DA2 CA CB SING N N 12 DA2 CA C SING N N 13 DA2 CA HA SING N N 14 DA2 CB CG SING N N 15 DA2 CB HCB1 SING N N 16 DA2 CB HCB2 SING N N 17 DA2 CG CD SING N N 18 DA2 CG HCG1 SING N N 19 DA2 CG HCG2 SING N N 20 DA2 CD NE SING N N 21 DA2 CD HCD1 SING N N 22 DA2 CD HCD2 SING N N 23 DA2 NE CZ SING N N 24 DA2 NE HNE SING N N 25 DA2 CZ NH2 DOUB N N 26 DA2 CZ NH1 SING N N 27 DA2 NH2 HNH2 SING N N 28 DA2 C O DOUB N N 29 DA2 C OXT SING N N 30 DA2 OXT HXT SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DA2 SMILES ACDLabs 12.01 "CN(C)C(/NCCCC(N)C(=O)O)=N" DA2 InChI InChI 1.03 "InChI=1S/C8H18N4O2/c1-12(2)8(10)11-5-3-4-6(9)7(13)14/h6H,3-5,9H2,1-2H3,(H2,10,11)(H,13,14)/t6-/m0/s1" DA2 InChIKey InChI 1.03 YDGMGEXADBMOMJ-LURJTMIESA-N DA2 SMILES_CANONICAL CACTVS 3.385 "CN(C)C(=N)NCCC[C@H](N)C(O)=O" DA2 SMILES CACTVS 3.385 "CN(C)C(=N)NCCC[CH](N)C(O)=O" DA2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C(/NCCC[C@@H](C(=O)O)N)\N(C)C" DA2 SMILES "OpenEye OEToolkits" 1.7.6 "CN(C)C(=N)NCCCC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DA2 "SYSTEMATIC NAME" ACDLabs 12.01 "N~5~-(N,N-dimethylcarbamimidoyl)-L-ornithine" DA2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-azanyl-5-[(N,N-dimethylcarbamimidoyl)amino]pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DA2 "Create component" 1999-07-27 RCSB DA2 "Modify descriptor" 2011-06-04 RCSB DA2 "Modify parent residue" 2013-10-29 PDBJ DA2 "Modify one letter code" 2018-03-14 RCSB DA2 "Modify synonyms" 2020-06-05 PDBE DA2 "Modify backbone" 2023-11-03 PDBE DA2 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id DA2 _pdbx_chem_comp_synonyms.name ADMA _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id DA2 _pdbx_chem_comp_pcm.modified_residue_id ARG _pdbx_chem_comp_pcm.type Methylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession PTM-0066 _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession PTM-0341 #