data_DAD # _chem_comp.id DAD _chem_comp.name "2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 N5 O11 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 475.182 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DAD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1CJT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DAD PG PG P 0 1 N N N 56.851 -6.523 58.752 1.154 0.282 -6.595 PG DAD 1 DAD O1G O1G O 0 1 N N N 56.324 -5.374 57.973 -0.203 0.096 -7.154 O1G DAD 2 DAD O2G O2G O 0 1 N N N 55.991 -7.718 58.956 2.043 1.148 -7.622 O2G DAD 3 DAD O3G O3G O 0 1 N N N 57.282 -6.017 60.085 1.843 -1.154 -6.369 O3G DAD 4 DAD PB PB P 0 1 N N S 58.577 -8.235 57.439 0.156 0.140 -4.215 PB DAD 5 DAD O1B O1B O 0 1 N N N 58.271 -9.389 58.332 0.805 -1.178 -4.044 O1B DAD 6 DAD O2B O2B O 0 1 N N N 59.952 -8.064 56.888 -1.303 -0.060 -4.863 O2B DAD 7 DAD O3B O3B O 0 1 N N N 58.162 -6.965 58.136 1.053 1.057 -5.188 O3B DAD 8 DAD PA PA P 0 1 N N R 56.784 -9.174 55.499 -0.890 -0.108 -1.865 PA DAD 9 DAD O1A O1A O 0 1 N N N 56.406 -8.510 54.229 -0.225 -1.423 -1.729 O1A DAD 10 DAD O2A O2A O 0 1 N N N 55.730 -9.752 56.372 -2.333 -0.304 -2.552 O2A DAD 11 DAD O3A O3A O 0 1 N N N 57.599 -8.221 56.305 0.013 0.858 -2.781 O3A DAD 12 DAD "O5'" O5* O 0 1 N N N 57.848 -10.307 55.139 -1.075 0.552 -0.408 "O5'" DAD 13 DAD "C5'" C5* C 0 1 N N N 57.450 -11.666 54.995 -1.881 -0.348 0.353 "C5'" DAD 14 DAD "C4'" C4* C 0 1 N N R 56.935 -11.914 53.595 -2.096 0.222 1.757 "C4'" DAD 15 DAD "O4'" O4* O 0 1 N N N 56.307 -13.215 53.565 -0.841 0.305 2.467 "O4'" DAD 16 DAD "C3'" C3* C 0 1 N N N 57.982 -11.917 52.477 -2.967 -0.735 2.599 "C3'" DAD 17 DAD "C2'" C2* C 0 1 N N N 57.404 -12.883 51.443 -2.363 -0.640 4.018 "C2'" DAD 18 DAD "C1'" C1* C 0 1 N N S 56.561 -13.807 52.319 -1.199 0.363 3.865 "C1'" DAD 19 DAD N9 N9 N 0 1 Y N N 56.716 -15.252 52.419 -0.064 -0.040 4.699 N9 DAD 20 DAD C8 C8 C 0 1 Y N N 57.849 -15.959 52.714 0.946 -0.879 4.335 C8 DAD 21 DAD N7 N7 N 0 1 Y N N 57.702 -17.255 52.619 1.785 -1.017 5.320 N7 DAD 22 DAD C5 C5 C 0 1 Y N N 56.374 -17.409 52.247 1.370 -0.274 6.374 C5 DAD 23 DAD C6 C6 C 0 1 Y N N 55.601 -18.548 51.963 1.853 -0.045 7.674 C6 DAD 24 DAD N6 N6 N 0 1 N N N 56.060 -19.800 52.069 3.022 -0.645 8.110 N6 DAD 25 DAD N1 N1 N 0 1 Y N N 54.301 -18.354 51.632 1.165 0.763 8.472 N1 DAD 26 DAD C2 C2 C 0 1 Y N N 53.848 -17.099 51.529 0.049 1.339 8.064 C2 DAD 27 DAD N3 N3 N 0 1 Y N N 54.486 -15.954 51.758 -0.444 1.150 6.859 N3 DAD 28 DAD C4 C4 C 0 1 Y N N 55.762 -16.185 52.104 0.175 0.357 5.991 C4 DAD 29 DAD HOG2 2HOG H 0 0 N N N 56.328 -8.453 59.454 2.078 0.650 -8.450 HOG2 DAD 30 DAD HOG3 3HOG H 0 0 N N N 57.619 -6.752 60.583 2.724 -0.988 -6.005 HOG3 DAD 31 DAD HOB2 2HOB H 0 0 N N N 60.147 -7.328 56.319 -1.690 0.820 -4.957 HOB2 DAD 32 DAD HOA2 2HOA H 0 0 N N N 55.972 -10.177 57.186 -2.731 0.573 -2.621 HOA2 DAD 33 DAD "H5'1" 1H5* H 0 0 N N N 58.269 -12.371 55.268 -1.379 -1.312 0.427 "H5'1" DAD 34 DAD "H5'2" 2H5* H 0 0 N N N 56.708 -11.967 55.771 -2.846 -0.477 -0.137 "H5'2" DAD 35 DAD "H4'" H4* H 0 1 N N N 56.251 -11.057 53.391 -2.562 1.206 1.698 "H4'" DAD 36 DAD "H3'1" 1H3* H 0 0 N N N 58.230 -10.906 52.075 -2.892 -1.754 2.219 "H3'1" DAD 37 DAD "H3'2" 2H3* H 0 0 N N N 59.015 -12.166 52.814 -4.005 -0.403 2.604 "H3'2" DAD 38 DAD "H2'1" 1H2* H 0 0 N N N 56.857 -12.402 50.598 -1.989 -1.613 4.340 "H2'1" DAD 39 DAD "H2'2" 2H2* H 0 0 N N N 58.157 -13.395 50.800 -3.103 -0.262 4.724 "H2'2" DAD 40 DAD "H1'" H1* H 0 1 N N N 55.693 -13.871 51.622 -1.527 1.367 4.131 "H1'" DAD 41 DAD H8 H8 H 0 1 N N N 58.814 -15.514 53.008 1.037 -1.358 3.372 H8 DAD 42 DAD HN61 1HN6 H 0 0 N N N 55.499 -20.626 51.862 3.348 -0.476 9.008 HN61 DAD 43 DAD HN62 2HN6 H 0 0 N N N 56.421 -19.909 53.016 3.513 -1.237 7.519 HN62 DAD 44 DAD H2 H2 H 0 1 N N N 52.797 -16.993 51.209 -0.478 1.990 8.746 H2 DAD 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DAD PG O1G DOUB N N 1 DAD PG O2G SING N N 2 DAD PG O3G SING N N 3 DAD PG O3B SING N N 4 DAD O2G HOG2 SING N N 5 DAD O3G HOG3 SING N N 6 DAD PB O1B DOUB N N 7 DAD PB O2B SING N N 8 DAD PB O3B SING N N 9 DAD PB O3A SING N N 10 DAD O2B HOB2 SING N N 11 DAD PA O1A DOUB N N 12 DAD PA O2A SING N N 13 DAD PA O3A SING N N 14 DAD PA "O5'" SING N N 15 DAD O2A HOA2 SING N N 16 DAD "O5'" "C5'" SING N N 17 DAD "C5'" "C4'" SING N N 18 DAD "C5'" "H5'1" SING N N 19 DAD "C5'" "H5'2" SING N N 20 DAD "C4'" "O4'" SING N N 21 DAD "C4'" "C3'" SING N N 22 DAD "C4'" "H4'" SING N N 23 DAD "O4'" "C1'" SING N N 24 DAD "C3'" "C2'" SING N N 25 DAD "C3'" "H3'1" SING N N 26 DAD "C3'" "H3'2" SING N N 27 DAD "C2'" "C1'" SING N N 28 DAD "C2'" "H2'1" SING N N 29 DAD "C2'" "H2'2" SING N N 30 DAD "C1'" N9 SING N N 31 DAD "C1'" "H1'" SING N N 32 DAD N9 C8 SING Y N 33 DAD N9 C4 SING Y N 34 DAD C8 N7 DOUB Y N 35 DAD C8 H8 SING N N 36 DAD N7 C5 SING Y N 37 DAD C5 C6 SING Y N 38 DAD C5 C4 DOUB Y N 39 DAD C6 N6 SING N N 40 DAD C6 N1 DOUB Y N 41 DAD N6 HN61 SING N N 42 DAD N6 HN62 SING N N 43 DAD N1 C2 SING Y N 44 DAD C2 N3 DOUB Y N 45 DAD C2 H2 SING N N 46 DAD N3 C4 SING Y N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DAD SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3CC[C@H](CO[P@](O)(=O)O[P@](O)(=O)O[P](O)(O)=O)O3" DAD SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3CC[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3" DAD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@@H]3CC[C@@H](O3)CO[P@@](=O)(O)O[P@@](=O)(O)OP(=O)(O)O)N" DAD SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3CCC(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N" DAD InChI InChI 1.03 "InChI=1S/C10H16N5O11P3/c11-9-8-10(13-4-12-9)15(5-14-8)7-2-1-6(24-7)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h4-7H,1-3H2,(H,19,20)(H,21,22)(H2,11,12,13)(H2,16,17,18)/t6-,7+/m1/s1" DAD InChIKey InChI 1.03 OAKPWEUQDVLTCN-RQJHMYQMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DAD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,5S)-5-(6-aminopurin-9-yl)oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DAD "Create component" 1999-07-08 RCSB DAD "Modify descriptor" 2011-06-04 RCSB #