data_DAF # _chem_comp.id DAF _chem_comp.name "4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-alpha-D-xylo-hex-5-enopyranose" _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C13 H17 N O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-alpha-D-xylo-hex-5-enose; 4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-D-xylo-hex-5-enose; 4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-xylo-hex-5-enose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 315.276 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DAF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1BG9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 DAF "4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-alpha-D-xylo-hex-5-enose" PDB ? 2 DAF "4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-D-xylo-hex-5-enose" PDB ? 3 DAF "4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-xylo-hex-5-enose" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DAF C1 C1 C 0 1 N N S 6.194 67.673 36.749 3.701 -0.894 0.360 C1 DAF 1 DAF O1 O1 O 0 1 N Y N 7.247 66.714 36.916 4.209 -1.583 1.504 O1 DAF 2 DAF C2 C2 C 0 1 N N R 4.853 67.029 36.438 3.479 0.580 0.708 C2 DAF 3 DAF O2 O2 O 0 1 N N N 4.560 65.927 37.292 2.564 0.679 1.802 O2 DAF 4 DAF C3 C3 C 0 1 N N S 4.835 66.551 34.975 2.901 1.309 -0.509 C3 DAF 5 DAF O3 O3 O 0 1 N N N 3.626 65.818 34.766 3.815 1.211 -1.603 O3 DAF 6 DAF C4 C4 C 0 1 N N S 4.942 67.805 34.072 1.566 0.658 -0.891 C4 DAF 7 DAF N4 N4 N 0 1 N N N 4.864 67.448 32.674 0.572 0.911 0.161 N4 DAF 8 DAF C5 C5 C 0 1 N N N 6.282 68.558 34.415 1.789 -0.832 -1.034 C5 DAF 9 DAF O5 O5 O 0 1 N N N 6.601 68.706 35.813 2.455 -1.480 -0.036 O5 DAF 10 DAF C6 C6 C 0 1 N N N 7.010 69.527 33.501 1.352 -1.485 -2.092 C6 DAF 11 DAF C1H C1H C 0 1 N N S 3.751 67.944 31.881 -0.793 0.852 -0.379 C1H DAF 12 DAF C2H C2H C 0 1 N N S 4.016 68.307 30.433 -1.708 1.725 0.477 C2H DAF 13 DAF O2H O2H O 0 1 N N N 4.778 67.357 29.685 -1.594 1.336 1.847 O2H DAF 14 DAF C3H C3H C 0 1 N N R 4.670 69.690 30.524 -3.159 1.543 0.011 C3H DAF 15 DAF O3H O3H O 0 1 N N N 5.022 70.185 29.233 -3.266 1.858 -1.379 O3H DAF 16 DAF C4H C4H C 0 1 N N N 3.716 70.701 31.253 -3.528 0.091 0.239 C4H DAF 17 DAF O4H O4H O 0 1 N N N 3.927 72.104 31.112 -4.610 -0.217 0.692 O4H DAF 18 DAF C5H C5H C 0 1 N N N 2.609 70.128 32.152 -2.525 -0.933 -0.109 C5H DAF 19 DAF C6H C6H C 0 1 N N N 2.675 68.767 32.443 -1.256 -0.574 -0.389 C6H DAF 20 DAF C7H C7H C 0 1 N N N 1.485 71.028 32.713 -2.912 -2.352 -0.152 C7H DAF 21 DAF O7H O7H O 0 1 N N N 0.160 70.737 32.264 -4.052 -2.677 0.099 O7H DAF 22 DAF H1 H1 H 0 1 N N N 6.065 68.170 37.722 4.416 -0.971 -0.459 H1 DAF 23 DAF HO1 HO1 H 0 1 N N N 6.971 66.043 37.530 4.373 -2.525 1.356 HO1 DAF 24 DAF H2 H2 H 0 1 N N N 4.072 67.795 36.552 4.430 1.035 0.987 H2 DAF 25 DAF HO2 HO2 H 0 1 N N N 3.715 65.561 37.058 2.865 0.238 2.608 HO2 DAF 26 DAF H3 H3 H 0 1 N N N 5.710 65.909 34.797 2.738 2.358 -0.262 H3 DAF 27 DAF HO3 HO3 H 0 1 N N N 3.592 65.512 33.867 4.683 1.597 -1.426 HO3 DAF 28 DAF H4 H4 H 0 1 N N N 4.108 68.477 34.323 1.214 1.069 -1.837 H4 DAF 29 DAF HN4 HN4 H 0 1 N N N 5.703 67.777 32.240 0.686 0.266 0.928 HN4 DAF 30 DAF H6 H6 H 0 1 N N N 7.699 70.247 33.917 0.826 -0.956 -2.873 H6 DAF 31 DAF H6A H6A H 0 1 N N N 6.839 69.496 32.435 1.520 -2.548 -2.177 H6A DAF 32 DAF H1H H1H H 0 1 N N N 3.201 67.004 31.729 -0.789 1.234 -1.400 H1H DAF 33 DAF H2H H2H H 0 1 N N N 3.041 68.439 29.942 -1.420 2.771 0.370 H2H DAF 34 DAF HO2H HO2H H 0 0 N N N 4.891 67.671 28.795 -2.150 1.849 2.450 HO2H DAF 35 DAF H3H H3H H 0 1 N N N 5.579 69.594 31.136 -3.819 2.189 0.590 H3H DAF 36 DAF HO3H HO3H H 0 0 N N N 4.833 71.115 29.188 -4.160 1.763 -1.736 HO3H DAF 37 DAF H6H H6H H 0 1 N N N 1.932 68.317 33.084 -0.542 -1.348 -0.630 H6H DAF 38 DAF H7H H7H H 0 1 N N N 1.689 71.831 33.405 -2.179 -3.103 -0.407 H7H DAF 39 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DAF O5 C1 SING N N 1 DAF C2 C1 SING N N 2 DAF C1 O1 SING N N 3 DAF C1 H1 SING N N 4 DAF O1 HO1 SING N N 5 DAF C3 C2 SING N N 6 DAF C2 O2 SING N N 7 DAF C2 H2 SING N N 8 DAF O2 HO2 SING N N 9 DAF C4 C3 SING N N 10 DAF O3 C3 SING N N 11 DAF C3 H3 SING N N 12 DAF O3 HO3 SING N N 13 DAF N4 C4 SING N N 14 DAF C4 C5 SING N N 15 DAF C4 H4 SING N N 16 DAF C1H N4 SING N N 17 DAF N4 HN4 SING N N 18 DAF C6 C5 DOUB N N 19 DAF C5 O5 SING N N 20 DAF C6 H6 SING N N 21 DAF C6 H6A SING N N 22 DAF C2H C1H SING N N 23 DAF C1H C6H SING N N 24 DAF C1H H1H SING N N 25 DAF O2H C2H SING N N 26 DAF C2H C3H SING N N 27 DAF C2H H2H SING N N 28 DAF O2H HO2H SING N N 29 DAF O3H C3H SING N N 30 DAF C3H C4H SING N N 31 DAF C3H H3H SING N N 32 DAF O3H HO3H SING N N 33 DAF O4H C4H DOUB N N 34 DAF C4H C5H SING N N 35 DAF C5H C6H DOUB N N 36 DAF C5H C7H SING N N 37 DAF C6H H6H SING N N 38 DAF O7H C7H DOUB N N 39 DAF C7H H7H SING N N 40 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DAF SMILES ACDLabs 12.01 "O=CC2=CC(NC1C(/OC(O)C(O)C1O)=C)C(O)C(O)C2=O" DAF InChI InChI 1.03 "InChI=1S/C13H17NO8/c1-4-7(10(18)12(20)13(21)22-4)14-6-2-5(3-15)8(16)11(19)9(6)17/h2-3,6-7,9-14,17-21H,1H2/t6-,7+,9-,10-,11-,12+,13-/m0/s1" DAF InChIKey InChI 1.03 ZGWNRGISVMYHTF-KKXLKBQTSA-N DAF SMILES_CANONICAL CACTVS 3.370 "O[C@H]1OC(=C)[C@@H](N[C@H]2C=C(C=O)C(=O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O" DAF SMILES CACTVS 3.370 "O[CH]1OC(=C)[CH](N[CH]2C=C(C=O)C(=O)[CH](O)[CH]2O)[CH](O)[CH]1O" DAF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C=C1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)N[C@H]2C=C(C(=O)[C@@H]([C@H]2O)O)C=O" DAF SMILES "OpenEye OEToolkits" 1.7.6 "C=C1C(C(C(C(O1)O)O)O)NC2C=C(C(=O)C(C2O)O)C=O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DAF "SYSTEMATIC NAME" ACDLabs 12.01 "4,6-dideoxy-4-{[(1S,5R,6S)-3-formyl-5,6-dihydroxy-4-oxocyclohex-2-en-1-yl]amino}-alpha-D-xylo-hex-5-enopyranose" DAF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 ;(3S,4S,5R)-3-[[(3S,4S,5R,6S)-2-methylidene-4,5,6-tris(oxidanyl)oxan-3-yl]amino]-4,5-bis(oxidanyl)-6-oxidanylidene-cyclo hexene-1-carbaldehyde ; # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support DAF "CARBOHYDRATE ISOMER" D PDB ? DAF "CARBOHYDRATE RING" pyranose PDB ? DAF "CARBOHYDRATE ANOMER" alpha PDB ? DAF "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DAF "Create component" 1999-07-08 RCSB DAF "Modify descriptor" 2011-06-04 RCSB DAF "Other modification" 2012-12-22 RCSB DAF "Modify leaving atom flag" 2019-09-17 PDBE DAF "Other modification" 2020-07-03 RCSB DAF "Modify synonyms" 2020-07-17 RCSB DAF "Modify linking type" 2020-07-17 RCSB ##