data_DAN # _chem_comp.id DAN _chem_comp.name "2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C11 H17 N O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Neu5Ac2en _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 291.255 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DAN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2SIM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id DAN _pdbx_chem_comp_synonyms.name Neu5Ac2en _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DAN C1 C1 C 0 1 N N N 43.144 51.893 45.722 -3.371 -0.145 1.066 C1 DAN 1 DAN C2 C2 C 0 1 N N N 42.954 51.570 47.074 -2.157 -0.001 0.244 C2 DAN 2 DAN C3 C3 C 0 1 N N N 41.699 51.111 47.500 -2.321 0.457 -0.981 C3 DAN 3 DAN C4 C4 C 0 1 N N S 41.532 50.477 48.876 -1.163 0.671 -1.923 C4 DAN 4 DAN C5 C5 C 0 1 N N R 42.671 50.926 49.803 0.075 -0.004 -1.317 C5 DAN 5 DAN C6 C6 C 0 1 N N R 44.001 50.644 49.079 0.089 0.319 0.182 C6 DAN 6 DAN C7 C7 C 0 1 N N R 45.210 51.020 49.907 1.411 -0.147 0.796 C7 DAN 7 DAN C8 C8 C 0 1 N N R 46.476 50.766 49.057 1.419 0.173 2.292 C8 DAN 8 DAN C9 C9 C 0 1 N N N 47.745 51.177 49.868 2.740 -0.292 2.906 C9 DAN 9 DAN C10 C10 C 0 1 N N N 42.766 50.761 52.242 1.795 -0.091 -3.041 C10 DAN 10 DAN C11 C11 C 0 1 N N N 42.393 49.938 53.474 3.043 0.446 -3.693 C11 DAN 11 DAN N5 N5 N 0 1 N N N 42.512 50.210 51.057 1.288 0.518 -1.951 N5 DAN 12 DAN O1A O1A O 0 1 N N N 42.237 52.204 44.950 -4.455 0.154 0.607 O1A DAN 13 DAN O1B O1B O 0 1 N N N 44.284 51.827 45.245 -3.279 -0.609 2.329 O1B DAN 14 DAN O4 O4 O 0 1 N N N 40.299 50.810 49.507 -1.459 0.087 -3.193 O4 DAN 15 DAN O6 O6 O 0 1 N N N 44.058 51.447 47.898 -0.992 -0.351 0.817 O6 DAN 16 DAN O7 O7 O 0 1 N N N 45.055 52.388 50.255 1.550 -1.557 0.611 O7 DAN 17 DAN O8 O8 O 0 1 N N N 46.526 49.369 48.688 1.279 1.584 2.477 O8 DAN 18 DAN O9 O9 O 0 1 N N N 47.882 50.371 51.025 2.748 0.007 4.303 O9 DAN 19 DAN O10 O10 O 0 1 N N N 43.371 51.842 52.336 1.248 -1.073 -3.497 O10 DAN 20 DAN H3 H3 H 0 1 N N N 40.874 51.243 46.779 -3.319 0.689 -1.322 H3 DAN 21 DAN H4 H4 H 0 1 N N N 41.548 49.374 48.707 -0.978 1.738 -2.042 H4 DAN 22 DAN H5 H5 H 0 1 N N N 42.657 52.015 50.039 0.017 -1.083 -1.463 H5 DAN 23 DAN H6 H6 H 0 1 N N N 44.027 49.549 48.868 -0.016 1.394 0.321 H6 DAN 24 DAN H7 H7 H 0 1 N N N 45.307 50.417 50.839 2.239 0.366 0.309 H7 DAN 25 DAN H8 H8 H 0 1 N N N 46.443 51.381 48.127 0.590 -0.340 2.779 H8 DAN 26 DAN H91 H91 H 0 1 N N N 48.664 51.154 49.237 2.847 -1.368 2.765 H91 DAN 27 DAN H92 H92 H 0 1 N N N 47.741 52.263 50.119 3.569 0.221 2.420 H92 DAN 28 DAN H111 H111 H 0 0 N N N 42.605 50.399 54.466 3.299 -0.172 -4.553 H111 DAN 29 DAN H112 H112 H 0 0 N N N 41.317 49.647 53.418 2.868 1.470 -4.022 H112 DAN 30 DAN H113 H113 H 0 0 N N N 42.878 48.935 53.415 3.863 0.429 -2.976 H113 DAN 31 DAN HN5 HN5 H 0 1 N N N 42.196 49.241 51.109 1.726 1.303 -1.587 HN5 DAN 32 DAN HO1B HO1B H 0 0 N N N 44.412 52.045 44.329 -4.076 -0.703 2.868 HO1B DAN 33 DAN HO4 HO4 H 0 1 N N N 40.194 50.414 50.364 -2.241 0.542 -3.534 HO4 DAN 34 DAN HO7 HO7 H 0 1 N N N 45.814 52.624 50.775 0.799 -1.973 1.056 HO7 DAN 35 DAN HO8 HO8 H 0 1 N N N 47.304 49.212 48.165 2.031 2.000 2.032 HO8 DAN 36 DAN HO9 HO9 H 0 1 N N N 48.654 50.621 51.518 3.596 -0.301 4.651 HO9 DAN 37 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DAN C1 C2 SING N N 1 DAN C1 O1A DOUB N N 2 DAN C1 O1B SING N N 3 DAN C2 C3 DOUB N N 4 DAN C2 O6 SING N N 5 DAN C3 C4 SING N N 6 DAN C3 H3 SING N N 7 DAN C4 C5 SING N N 8 DAN C4 O4 SING N N 9 DAN C4 H4 SING N N 10 DAN C5 C6 SING N N 11 DAN C5 N5 SING N N 12 DAN C5 H5 SING N N 13 DAN C6 C7 SING N N 14 DAN C6 O6 SING N N 15 DAN C6 H6 SING N N 16 DAN C7 C8 SING N N 17 DAN C7 O7 SING N N 18 DAN C7 H7 SING N N 19 DAN C8 C9 SING N N 20 DAN C8 O8 SING N N 21 DAN C8 H8 SING N N 22 DAN C9 O9 SING N N 23 DAN C9 H91 SING N N 24 DAN C9 H92 SING N N 25 DAN C10 C11 SING N N 26 DAN C10 N5 SING N N 27 DAN C10 O10 DOUB N N 28 DAN C11 H111 SING N N 29 DAN C11 H112 SING N N 30 DAN C11 H113 SING N N 31 DAN N5 HN5 SING N N 32 DAN O1B HO1B SING N N 33 DAN O4 HO4 SING N N 34 DAN O7 HO7 SING N N 35 DAN O8 HO8 SING N N 36 DAN O9 HO9 SING N N 37 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DAN SMILES ACDLabs 10.04 "O=C(O)C=1OC(C(O)C(O)CO)C(NC(=O)C)C(O)C=1" DAN SMILES_CANONICAL CACTVS 3.341 "CC(=O)N[C@@H]1[C@@H](O)C=C(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O" DAN SMILES CACTVS 3.341 "CC(=O)N[CH]1[CH](O)C=C(O[CH]1[CH](O)[CH](O)CO)C(O)=O" DAN SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=O)N[C@@H]1[C@H](C=C(O[C@H]1[C@@H]([C@@H](CO)O)O)C(=O)O)O" DAN SMILES "OpenEye OEToolkits" 1.5.0 "CC(=O)NC1C(C=C(OC1C(C(CO)O)O)C(=O)O)O" DAN InChI InChI 1.03 "InChI=1S/C11H17NO8/c1-4(14)12-8-5(15)2-7(11(18)19)20-10(8)9(17)6(16)3-13/h2,5-6,8-10,13,15-17H,3H2,1H3,(H,12,14)(H,18,19)/t5-,6+,8+,9+,10+/m0/s1" DAN InChIKey InChI 1.03 JINJZWSZQKHCIP-UFGQHTETSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DAN "SYSTEMATIC NAME" ACDLabs 10.04 "5-(acetylamino)-2,6-anhydro-3,5-dideoxy-D-glycero-D-galacto-non-2-enonic acid" DAN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(4S,5R,6R)-5-acetamido-4-hydroxy-6-[(1R,2R)-1,2,3-trihydroxypropyl]-5,6-dihydro-4H-pyran-2-carboxylic acid" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support DAN "CARBOHYDRATE ISOMER" D PDB ? DAN "CARBOHYDRATE RING" dihydropyran PDB ? DAN "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DAN "Create component" 1999-07-08 RCSB DAN "Modify descriptor" 2011-06-04 RCSB DAN "Modify atom id" 2020-04-11 RCSB DAN "Other modification" 2020-07-03 RCSB DAN "Modify synonyms" 2020-07-17 RCSB DAN "Modify component atom id" 2020-07-17 RCSB ##