data_DAR # _chem_comp.id DAR _chem_comp.name D-ARGININE _chem_comp.type "D-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H15 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 175.209 _chem_comp.one_letter_code R _chem_comp.three_letter_code DAR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 1CZQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DAR N N N 0 1 N N N Y Y N 17.418 -6.202 32.216 -2.318 1.786 -0.308 N DAR 1 DAR CA CA C 0 1 N N R Y N N 18.673 -6.893 32.489 -2.260 0.486 0.373 CA DAR 2 DAR CB CB C 0 1 N N N N N N 18.480 -8.408 32.369 -1.023 -0.282 -0.099 CB DAR 3 DAR CG CG C 0 1 N N N N N N 18.169 -8.847 30.969 0.238 0.463 0.342 CG DAR 4 DAR CD CD C 0 1 N N N N N N 19.397 -8.762 30.070 1.475 -0.305 -0.130 CD DAR 5 DAR NE NE N 0 1 N N N N N N 19.715 -7.408 29.607 2.683 0.409 0.292 NE DAR 6 DAR CZ CZ C 0 1 N N N N N N 20.121 -7.134 28.370 3.917 -0.093 -0.019 CZ DAR 7 DAR NH1 NH1 N 0 1 N N N N N N 20.248 -8.118 27.481 4.020 -1.229 -0.705 NH1 DAR 8 DAR NH2 NH2 N 1 1 N N N N N N 20.409 -5.891 28.015 5.015 0.556 0.365 NH2 DAR 9 DAR C C C 0 1 N N N Y N Y 19.313 -6.582 33.833 -3.499 -0.308 0.047 C DAR 10 DAR O O O 0 1 N N N Y N Y 19.994 -7.423 34.421 -3.870 -1.327 0.838 O DAR 11 DAR OXT OXT O 0 1 N Y N Y N Y 19.100 -5.379 34.342 -4.157 -0.028 -0.926 OXT DAR 12 DAR H H H 0 1 N N N Y Y N 17.546 -5.193 32.295 -2.371 1.593 -1.297 H DAR 13 DAR H2 HN2 H 0 1 N Y N Y Y N 16.660 -6.537 32.811 -3.196 2.210 -0.048 H2 DAR 14 DAR HA HA H 0 1 N N N Y N N 19.378 -6.505 31.717 -2.201 0.642 1.450 HA DAR 15 DAR HB2 1HB H 0 1 N N N N N N 19.363 -8.955 32.771 -1.027 -1.281 0.338 HB2 DAR 16 DAR HB3 2HB H 0 1 N N N N N N 17.702 -8.768 33.082 -1.037 -0.361 -1.186 HB3 DAR 17 DAR HG2 1HG H 0 1 N N N N N N 17.721 -9.868 30.951 0.242 1.462 -0.095 HG2 DAR 18 DAR HG3 2HG H 0 1 N N N N N N 17.311 -8.275 30.543 0.253 0.542 1.429 HG3 DAR 19 DAR HD2 1HD H 0 1 N N N N N N 20.280 -9.218 30.574 1.471 -1.303 0.307 HD2 DAR 20 DAR HD3 2HD H 0 1 N N N N N N 19.293 -9.455 29.202 1.461 -0.383 -1.217 HD3 DAR 21 DAR HE HNE H 0 1 N N N N N N 20.411 -7.025 30.246 2.608 1.236 0.793 HE DAR 22 DAR HH11 1HH1 H 0 0 N N N N N N 20.559 -7.907 26.532 3.221 -1.701 -0.985 HH11 DAR 23 DAR HH12 2HH1 H 0 0 N N N N N N 19.362 -8.621 27.426 4.896 -1.584 -0.926 HH12 DAR 24 DAR HH21 1HH2 H 0 0 N N N N N N 20.311 -5.137 28.695 5.890 0.200 0.145 HH21 DAR 25 DAR HH22 2HH2 H 0 0 N N N N N N 20.720 -5.680 27.066 4.940 1.384 0.865 HH22 DAR 26 DAR HXT HXT H 0 1 N Y N Y N Y 19.499 -5.184 35.181 ? ? ? HXT DAR 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DAR N CA SING N N 1 DAR N H SING N N 2 DAR N H2 SING N N 3 DAR CA CB SING N N 4 DAR CA C SING N N 5 DAR CA HA SING N N 6 DAR CB CG SING N N 7 DAR CB HB2 SING N N 8 DAR CB HB3 SING N N 9 DAR CG CD SING N N 10 DAR CG HG2 SING N N 11 DAR CG HG3 SING N N 12 DAR CD NE SING N N 13 DAR CD HD2 SING N N 14 DAR CD HD3 SING N N 15 DAR NE CZ SING N N 16 DAR NE HE SING N N 17 DAR CZ NH1 SING N N 18 DAR CZ NH2 DOUB N N 19 DAR NH1 HH11 SING N N 20 DAR NH1 HH12 SING N N 21 DAR NH2 HH21 SING N N 22 DAR NH2 HH22 SING N N 23 DAR C O DOUB N N 24 DAR C OXT SING N N 25 DAR OXT HXT SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DAR SMILES ACDLabs 10.04 "O=C(O)C(N)CCCN\C(=[NH2+])N" DAR SMILES_CANONICAL CACTVS 3.341 "N[C@H](CCCNC(N)=[NH2+])C(O)=O" DAR SMILES CACTVS 3.341 "N[CH](CCCNC(N)=[NH2+])C(O)=O" DAR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(C[C@H](C(=O)O)N)CNC(=[NH2+])N" DAR SMILES "OpenEye OEToolkits" 1.5.0 "C(CC(C(=O)O)N)CNC(=[NH2+])N" DAR InChI InChI 1.03 "InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p+1/t4-/m1/s1" DAR InChIKey InChI 1.03 ODKSFYDXXFIFQN-SCSAIBSYSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DAR "SYSTEMATIC NAME" ACDLabs 10.04 "amino{[(4R)-4-amino-4-carboxybutyl]amino}methaniminium" DAR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[amino-[[(4R)-4-amino-5-hydroxy-5-oxo-pentyl]amino]methylidene]azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DAR "Create component" 1999-07-08 RCSB DAR "Modify descriptor" 2011-06-04 RCSB DAR "Modify backbone" 2023-11-03 PDBE #