data_DAV # _chem_comp.id DAV _chem_comp.name "DELTA-AMINO VALERIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H12 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 1999-09-15 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 118.154 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DAV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JDW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DAV OXT OT1 O 0 1 N Y N Y N Y 43.954 73.980 18.367 -3.374 -0.662 0.000 OT1 DAV 1 DAV O OT2 O 0 1 N N N Y N Y 43.162 72.212 17.337 -2.228 1.227 0.001 OT2 DAV 2 DAV CB CB C 0 1 N N N Y N N 45.784 71.103 17.478 0.248 0.282 0.000 CB DAV 3 DAV CG CG C 0 1 N N N Y N N 47.158 70.836 16.917 1.580 -0.472 0.000 CG DAV 4 DAV CD CD C 0 1 N N N Y N N 47.738 69.604 17.540 2.734 0.533 0.000 CD DAV 5 DAV N NE N 1 1 N N N Y Y N 48.075 68.542 16.573 4.013 -0.191 0.000 NE DAV 6 DAV C C C 0 1 N N N Y N Y 44.106 72.939 17.717 -2.218 0.019 0.000 C DAV 7 DAV C1 CA C 0 1 N N N Y N N 45.512 72.550 17.359 -0.906 -0.723 0.000 CA DAV 8 DAV HXT HOT1 H 0 0 N Y N Y N Y 44.671 74.532 18.655 -4.216 -0.186 0.000 HOT1 DAV 9 DAV HCB1 HCB1 H 0 0 N N N Y N N 44.995 70.476 17.000 0.185 0.907 0.891 HCB1 DAV 10 DAV HCB2 HCB2 H 0 0 N N N Y N N 45.664 70.726 18.520 0.185 0.908 -0.889 HCB2 DAV 11 DAV HCG1 HCG1 H 0 0 N N N Y N N 47.149 70.776 15.803 1.643 -1.097 -0.891 HCG1 DAV 12 DAV HCG2 HCG2 H 0 0 N N N Y N N 47.832 71.716 17.028 1.643 -1.098 0.889 HCG2 DAV 13 DAV HCD1 HCD1 H 0 0 N N N Y N N 48.626 69.861 18.162 2.671 1.158 0.891 HCD1 DAV 14 DAV HCD2 HCD2 H 0 0 N N N Y N N 47.059 69.210 18.332 2.671 1.159 -0.889 HCD2 DAV 15 DAV H HT1 H 0 1 N N N Y Y N 48.776 68.901 15.894 4.071 -0.771 0.823 HT1 DAV 16 DAV H2 HT2 H 0 1 N Y N Y Y N 47.216 68.252 16.063 4.774 0.472 0.000 HT2 DAV 17 DAV H3 HT3 H 0 1 N Y N Y Y N 48.470 67.724 17.080 4.071 -0.770 -0.824 HT3 DAV 18 DAV HCA1 HCA1 H 0 0 N N N Y N N 46.245 73.136 17.959 -0.843 -1.348 -0.891 HCA1 DAV 19 DAV HCA2 HCA2 H 0 0 N N N Y N N 45.770 72.914 16.337 -0.843 -1.350 0.889 HCA2 DAV 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DAV OXT C SING N N 1 DAV OXT HXT SING N N 2 DAV O C DOUB N N 3 DAV CB CG SING N N 4 DAV CB C1 SING N N 5 DAV CB HCB1 SING N N 6 DAV CB HCB2 SING N N 7 DAV CG CD SING N N 8 DAV CG HCG1 SING N N 9 DAV CG HCG2 SING N N 10 DAV CD N SING N N 11 DAV CD HCD1 SING N N 12 DAV CD HCD2 SING N N 13 DAV N H SING N N 14 DAV N H2 SING N N 15 DAV N H3 SING N N 16 DAV C C1 SING N N 17 DAV C1 HCA1 SING N N 18 DAV C1 HCA2 SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DAV SMILES ACDLabs 10.04 "O=C(O)CCCC[NH3+]" DAV SMILES_CANONICAL CACTVS 3.341 "[NH3+]CCCCC(O)=O" DAV SMILES CACTVS 3.341 "[NH3+]CCCCC(O)=O" DAV SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(CC[NH3+])CC(=O)O" DAV SMILES "OpenEye OEToolkits" 1.5.0 "C(CC[NH3+])CC(=O)O" DAV InChI InChI 1.03 "InChI=1S/C5H11NO2/c6-4-2-1-3-5(7)8/h1-4,6H2,(H,7,8)/p+1" DAV InChIKey InChI 1.03 JJMDCOVWQOJGCB-UHFFFAOYSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DAV "SYSTEMATIC NAME" ACDLabs 10.04 4-carboxybutan-1-aminium DAV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(5-hydroxy-5-oxo-pentyl)azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DAV "Create component" 1999-09-15 RCSB DAV "Modify descriptor" 2011-06-04 RCSB DAV "Modify backbone" 2023-11-03 PDBE DAV "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 DAV ? None "Non-standard residue" "Amino-acid side chain and backbone" "Any position" ? ? ? ? 2 DAV LYS None "Covalent chemical modification" "Amino-acid side chain" "Any position" CG NZ ? ? #