data_DBN
#

_chem_comp.id                                   DBN
_chem_comp.name                                 "6-(4,5-DIHYDRO-1H-IMIDAZOL-2-YL)-2-{5-[4-(4,5-DIHYDRO-1H-IMIDAZOL-2-YL)PHENYL]THIEN-2-YL}-1H-BENZIMIDAZOLE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H20 N6 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        DB819
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2005-10-06
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       412.510
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DBN
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2B3E
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DBN  C27   C27   C  0  1  N  N  N   9.754  18.085  15.016    9.693  -1.555   0.375  C27   DBN   1  
DBN  C28   C28   C  0  1  N  N  N   8.298  17.606  15.191    9.018  -2.474  -0.663  C28   DBN   2  
DBN  C29   C29   C  0  1  N  N  N  13.696  27.623  -0.581   -9.937  -1.065  -0.774  C29   DBN   3  
DBN  C30   C30   C  0  1  N  N  N  14.547  26.346  -0.445   -9.825  -1.395   0.728  C30   DBN   4  
DBN  C1    C1    C  0  1  Y  N  N   9.604  24.728   5.570   -2.281   0.837   0.058  C1    DBN   5  
DBN  S2    S2    S  0  1  Y  N  N  10.025  23.454   6.613   -0.834  -0.207  -0.004  S2    DBN   6  
DBN  C3    C3    C  0  1  Y  N  N   8.565  23.549   7.480    0.408   1.074   0.058  C3    DBN   7  
DBN  C4    C4    C  0  1  Y  N  N   7.759  24.557   6.984   -0.362   2.224   0.123  C4    DBN   8  
DBN  C5    C5    C  0  1  Y  N  N   8.358  25.210   5.875   -1.725   2.103   0.117  C5    DBN   9  
DBN  C6    C6    C  0  1  Y  N  N   8.291  22.697   8.639    1.871   0.943   0.044  C6    DBN  10  
DBN  N7    N7    N  0  1  Y  N  N   7.090  22.591   9.150    2.722   1.944   0.088  N7    DBN  11  
DBN  C8    C8    C  0  1  Y  N  N   7.248  21.748  10.214    3.984   1.473   0.063  C8    DBN  12  
DBN  C9    C9    C  0  1  Y  N  N   8.567  21.339  10.356    3.905   0.069  -0.012  C9    DBN  13  
DBN  N10   N10   N  0  1  Y  N  N   9.236  21.991   9.329    2.557  -0.243  -0.022  N10   DBN  14  
DBN  C11   C11   C  0  1  Y  N  N   6.293  21.268  11.112    5.239   2.095   0.091  C11   DBN  15  
DBN  C12   C12   C  0  1  Y  N  N   6.654  20.403  12.129    6.375   1.344   0.045  C12   DBN  16  
DBN  C13   C13   C  0  1  Y  N  N   7.980  19.976  12.293    6.302  -0.052  -0.030  C13   DBN  17  
DBN  C14   C14   C  0  1  Y  N  N   8.942  20.478  11.381    5.063  -0.688  -0.058  C14   DBN  18  
DBN  C15   C15   C  0  1  Y  N  N  10.464  25.176   4.459   -3.705   0.449   0.045  C15   DBN  19  
DBN  C16   C16   C  0  1  Y  N  N  11.502  24.333   4.025   -4.627   1.200  -0.690  C16   DBN  20  
DBN  C17   C17   C  0  1  Y  N  N  12.322  24.728   2.958   -5.949   0.836  -0.705  C17   DBN  21  
DBN  C18   C18   C  0  1  Y  N  N  12.111  25.956   2.318   -6.376  -0.279   0.020  C18   DBN  22  
DBN  C19   C19   C  0  1  Y  N  N  11.052  26.776   2.743   -5.455  -1.030   0.753  C19   DBN  23  
DBN  C20   C20   C  0  1  Y  N  N  10.232  26.389   3.812   -4.132  -0.670   0.766  C20   DBN  24  
DBN  C21   C21   C  0  1  N  N  N   8.388  19.093  13.411    7.544  -0.854  -0.079  C21   DBN  25  
DBN  N22   N22   N  0  1  N  N  N   9.622  19.018  13.873    8.654  -0.554   0.668  N22   DBN  26  
DBN  N23   N23   N  0  1  N  N  N   7.595  18.345  14.121    7.678  -1.895  -0.834  N23   DBN  27  
DBN  C24   C24   C  0  1  N  N  N  12.942  26.374   1.197   -7.803  -0.667   0.006  C24   DBN  28  
DBN  N25   N25   N  0  1  N  N  N  12.732  27.474   0.512   -8.580  -0.609  -1.122  N25   DBN  29  
DBN  N26   N26   N  0  1  N  N  N  13.928  25.671   0.697   -8.425  -1.091   1.057  N26   DBN  30  
DBN  H271  1H27  H  0  0  N  N  N  10.226  18.515  15.929    9.956  -2.117   1.272  H271  DBN  31  
DBN  H272  2H27  H  0  0  N  N  N  10.508  17.275  14.884   10.575  -1.076  -0.052  H272  DBN  32  
DBN  H281  1H28  H  0  0  N  N  N   8.160  16.499  15.167    8.948  -3.493  -0.283  H281  DBN  33  
DBN  H282  2H28  H  0  0  N  N  N   7.876  17.744  16.214    9.566  -2.454  -1.605  H282  DBN  34  
DBN  H291  1H29  H  0  0  N  N  N  14.274  28.576  -0.571  -10.202  -1.954  -1.345  H291  DBN  35  
DBN  H292  2H29  H  0  0  N  N  N  13.244  27.781  -1.587  -10.664  -0.270  -0.939  H292  DBN  36  
DBN  H301  1H30  H  0  0  N  N  N  14.617  25.729  -1.371  -10.499  -0.766   1.309  H301  DBN  37  
DBN  H302  2H30  H  0  0  N  N  N  15.643  26.522  -0.346  -10.038  -2.450   0.904  H302  DBN  38  
DBN  H4    H4    H  0  1  N  N  N   6.774  24.805   7.413    0.104   3.197   0.173  H4    DBN  39  
DBN  H5    H5    H  0  1  N  N  N   7.892  26.026   5.296   -2.356   2.979   0.167  H5    DBN  40  
DBN  H10   H10   H  0  1  N  N  N  10.233  21.957   9.120    2.170  -1.131  -0.068  H10   DBN  41  
DBN  H11   H11   H  0  1  N  N  N   5.238  21.576  11.016    5.307   3.172   0.149  H11   DBN  42  
DBN  H12   H12   H  0  1  N  N  N   5.871  20.047  12.820    7.340   1.830   0.067  H12   DBN  43  
DBN  H14   H14   H  0  1  N  N  N  10.003  20.192  11.470    5.006  -1.765  -0.115  H14   DBN  44  
DBN  H16   H16   H  0  1  N  N  N  11.672  23.362   4.521   -4.298   2.064  -1.247  H16   DBN  45  
DBN  H17   H17   H  0  1  N  N  N  13.138  24.068   2.619   -6.662   1.416  -1.273  H17   DBN  46  
DBN  H19   H19   H  0  1  N  N  N  10.862  27.734   2.231   -5.785  -1.894   1.311  H19   DBN  47  
DBN  H20   H20   H  0  1  N  N  N   9.404  27.038   4.143   -3.419  -1.251   1.334  H20   DBN  48  
DBN  H22   H22   H  0  1  N  N  N  10.276  18.777  13.128    8.739   0.187   1.288  H22   DBN  49  
DBN  H25   H25   H  0  1  N  N  N  11.772  27.522   0.170   -8.287  -0.318  -1.999  H25   DBN  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DBN  C27  C28   SING  N  N   1  
DBN  C27  N22   SING  N  N   2  
DBN  C27  H271  SING  N  N   3  
DBN  C27  H272  SING  N  N   4  
DBN  C28  N23   SING  N  N   5  
DBN  C28  H281  SING  N  N   6  
DBN  C28  H282  SING  N  N   7  
DBN  C29  C30   SING  N  N   8  
DBN  C29  N25   SING  N  N   9  
DBN  C29  H291  SING  N  N  10  
DBN  C29  H292  SING  N  N  11  
DBN  C30  N26   SING  N  N  12  
DBN  C30  H301  SING  N  N  13  
DBN  C30  H302  SING  N  N  14  
DBN  C1   S2    SING  Y  N  15  
DBN  C1   C5    DOUB  Y  N  16  
DBN  C1   C15   SING  Y  N  17  
DBN  S2   C3    SING  Y  N  18  
DBN  C3   C4    DOUB  Y  N  19  
DBN  C3   C6    SING  Y  N  20  
DBN  C4   C5    SING  Y  N  21  
DBN  C4   H4    SING  N  N  22  
DBN  C5   H5    SING  N  N  23  
DBN  C6   N7    DOUB  Y  N  24  
DBN  C6   N10   SING  Y  N  25  
DBN  N7   C8    SING  Y  N  26  
DBN  C8   C9    DOUB  Y  N  27  
DBN  C8   C11   SING  Y  N  28  
DBN  C9   N10   SING  Y  N  29  
DBN  C9   C14   SING  Y  N  30  
DBN  N10  H10   SING  N  N  31  
DBN  C11  C12   DOUB  Y  N  32  
DBN  C11  H11   SING  N  N  33  
DBN  C12  C13   SING  Y  N  34  
DBN  C12  H12   SING  N  N  35  
DBN  C13  C14   DOUB  Y  N  36  
DBN  C13  C21   SING  N  N  37  
DBN  C14  H14   SING  N  N  38  
DBN  C15  C16   SING  Y  N  39  
DBN  C15  C20   DOUB  Y  N  40  
DBN  C16  C17   DOUB  Y  N  41  
DBN  C16  H16   SING  N  N  42  
DBN  C17  C18   SING  Y  N  43  
DBN  C17  H17   SING  N  N  44  
DBN  C18  C19   DOUB  Y  N  45  
DBN  C18  C24   SING  N  N  46  
DBN  C19  C20   SING  Y  N  47  
DBN  C19  H19   SING  N  N  48  
DBN  C20  H20   SING  N  N  49  
DBN  C21  N22   SING  N  N  50  
DBN  C21  N23   DOUB  N  N  51  
DBN  N22  H22   SING  N  N  52  
DBN  C24  N25   SING  N  N  53  
DBN  C24  N26   DOUB  N  N  54  
DBN  N25  H25   SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DBN  SMILES            ACDLabs               10.04  "n3c2c(cc(C1=NCCN1)cc2)nc3c4sc(cc4)c6ccc(C5=NCCN5)cc6"  
DBN  SMILES_CANONICAL  CACTVS                3.341  "C1CN=C(N1)c2ccc(cc2)c3sc(cc3)c4[nH]c5cc(ccc5n4)C6=NCCN6"  
DBN  SMILES            CACTVS                3.341  "C1CN=C(N1)c2ccc(cc2)c3sc(cc3)c4[nH]c5cc(ccc5n4)C6=NCCN6"  
DBN  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1cc(ccc1c2ccc(s2)c3[nH]c4cc(ccc4n3)C5=NCCN5)C6=NCCN6"  
DBN  SMILES            "OpenEye OEToolkits"  1.5.0  "c1cc(ccc1c2ccc(s2)c3[nH]c4cc(ccc4n3)C5=NCCN5)C6=NCCN6"  
DBN  InChI             InChI                 1.03   "InChI=1S/C23H20N6S/c1-3-15(21-24-9-10-25-21)4-2-14(1)19-7-8-20(30-19)23-28-17-6-5-16(13-18(17)29-23)22-26-11-12-27-22/h1-8,13H,9-12H2,(H,24,25)(H,26,27)(H,28,29)"  
DBN  InChIKey          InChI                 1.03   KPAUDMFCLSTUBG-UHFFFAOYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DBN  "SYSTEMATIC NAME"  ACDLabs               10.04  "6-(4,5-dihydro-1H-imidazol-2-yl)-2-{5-[4-(4,5-dihydro-1H-imidazol-2-yl)phenyl]thiophen-2-yl}-1H-benzimidazole"  
DBN  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "6-(4,5-dihydro-1H-imidazol-2-yl)-2-[5-[4-(4,5-dihydro-1H-imidazol-2-yl)phenyl]thiophen-2-yl]-1H-benzimidazole"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DBN  "Create component"      2005-10-06  RCSB  
DBN  "Modify aromatic_flag"  2011-06-04  RCSB  
DBN  "Modify descriptor"     2011-06-04  RCSB  
DBN  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DBN
_pdbx_chem_comp_synonyms.name        DB819
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##