data_DCA
#
_chem_comp.id DCA
_chem_comp.name "DESULFO-COENZYME A"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H36 N7 O16 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 735.469
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DCA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DCA N1A AN1 N 0 1 Y N N -28.612 114.595 38.173 -4.584 -0.923 -9.375 N1A DCA 1
DCA C2A AC2 C 0 1 Y N N -29.590 114.789 39.044 -3.476 -1.642 -9.372 C2A DCA 2
DCA N3A AN3 N 0 1 Y N N -29.711 114.269 40.274 -2.557 -1.520 -8.438 N3A DCA 3
DCA C4A AC4 C 0 1 Y N N -28.642 113.455 40.513 -2.710 -0.649 -7.446 C4A DCA 4
DCA C5A AC5 C 0 1 Y N N -27.554 113.206 39.742 -3.875 0.135 -7.401 C5A DCA 5
DCA C6A AC6 C 0 1 Y N N -27.542 113.851 38.481 -4.827 -0.030 -8.421 C6A DCA 6
DCA N6A AN6 N 0 1 N N N -26.600 113.725 37.551 -5.990 0.718 -8.432 N6A DCA 7
DCA N7A AN7 N 0 1 Y N N -26.616 112.333 40.353 -3.783 0.922 -6.302 N7A DCA 8
DCA C8A AC8 C 0 1 Y N N -27.200 112.176 41.514 -2.666 0.672 -5.682 C8A DCA 9
DCA N9A AN9 N 0 1 Y N N -28.409 112.789 41.682 -1.970 -0.292 -6.348 N9A DCA 10
DCA C1B AC1* C 0 1 N N R -29.360 112.799 42.799 -0.668 -0.842 -5.963 C1B DCA 11
DCA C2B AC2* C 0 1 N N R -30.115 111.434 42.829 0.483 0.036 -6.514 C2B DCA 12
DCA O2B AO2* O 0 1 N N N -31.255 111.490 42.001 0.824 -0.347 -7.848 O2B DCA 13
DCA C3B AC3* C 0 1 N N S -30.428 111.316 44.294 1.639 -0.290 -5.532 C3B DCA 14
DCA O3B AO3* O 0 1 N N N -31.493 112.113 44.688 2.508 -1.276 -6.093 O3B DCA 15
DCA P3B AP3* P 0 1 N N N -33.052 111.617 44.834 3.977 -0.621 -6.157 P3B DCA 16
DCA O7A AO7 O 0 1 N N N -33.547 111.329 43.499 4.412 -0.252 -4.791 O7A DCA 17
DCA O8A AO8 O 0 1 N N N -33.607 112.713 45.629 5.012 -1.683 -6.782 O8A DCA 18
DCA O9A AO9 O 0 1 N N N -32.947 110.445 45.839 3.937 0.696 -7.081 O9A DCA 19
DCA C4B AC4* C 0 1 N N R -29.148 111.904 44.949 0.924 -0.838 -4.282 C4B DCA 20
DCA O4B AO4* O 0 1 N N N -28.619 112.879 43.983 -0.489 -0.773 -4.532 O4B DCA 21
DCA C5B AC5* C 0 1 N N N -28.158 110.823 45.208 1.277 0.017 -3.064 C5B DCA 22
DCA O5B AO5* O 0 1 N N N -27.604 110.179 44.068 0.604 -0.493 -1.912 O5B DCA 23
DCA P1A AP1 P 0 1 N N S -27.822 108.588 43.834 1.018 0.449 -0.674 P1A DCA 24
DCA O1A AO1 O 0 1 N N N -27.467 108.195 42.519 0.599 1.841 -0.953 O1A DCA 25
DCA O2A AO2 O 0 1 N N N -29.188 108.260 44.402 2.615 0.399 -0.472 O2A DCA 26
DCA O3A AO3 O 0 1 N N N -26.725 107.998 44.859 0.291 -0.072 0.664 O3A DCA 27
DCA P2A AP2 P 0 1 N N R -26.816 107.356 46.322 0.748 0.910 1.854 P2A DCA 28
DCA O4A AO4 O 0 1 N N N -27.691 108.065 47.246 0.333 2.295 1.537 O4A DCA 29
DCA O5A AO5 O 0 1 N N N -25.400 107.089 46.756 2.349 0.853 2.013 O5A DCA 30
DCA O6A AO6 O 0 1 N N N -27.528 106.023 45.959 0.055 0.445 3.231 O6A DCA 31
DCA CBP PC11 C 0 1 N N N -27.757 103.803 45.073 -0.128 0.963 5.584 CBP DCA 32
DCA CCP PC12 C 0 1 N N N -26.890 105.087 45.069 0.497 1.351 4.243 CCP DCA 33
DCA CDP PC13 C 0 1 N N N -27.007 102.734 44.368 0.297 -0.459 5.952 CDP DCA 34
DCA CEP PC14 C 0 1 N N N -29.070 104.161 44.368 -1.653 1.026 5.473 CEP DCA 35
DCA CAP PC10 C 0 1 N N R -28.040 103.234 46.483 0.344 1.933 6.668 CAP DCA 36
DCA OAP PO10 O 0 1 N N N -28.833 102.059 46.265 0.049 3.273 6.269 OAP DCA 37
DCA C9P PC9 C 0 1 N N N -26.782 102.810 47.251 -0.365 1.626 7.961 C9P DCA 38
DCA O9P PO9 O 0 1 N N N -26.190 103.756 47.829 -1.247 2.358 8.357 O9P DCA 39
DCA N8P PN8 N 0 1 N N N -26.422 101.516 47.139 -0.019 0.539 8.678 N8P DCA 40
DCA C7P PC7 C 0 1 N N N -25.197 101.163 47.957 -0.722 0.229 9.926 C7P DCA 41
DCA C6P PC6 C 0 1 N N N -25.290 99.657 48.385 -0.139 -1.045 10.537 C6P DCA 42
DCA C5P PC5 C 0 1 N N N -24.099 99.310 49.289 -0.862 -1.364 11.820 C5P DCA 43
DCA O5P PO5 O 0 1 N N N -23.351 100.249 49.731 -1.756 -0.641 12.208 O5P DCA 44
DCA N4P PN4 N 0 1 N N N -23.844 98.052 49.586 -0.516 -2.451 12.537 N4P DCA 45
DCA C3P PC3 C 0 1 N N N -22.686 97.746 50.496 -1.219 -2.760 13.785 C3P DCA 46
DCA C2P PC2 C 0 1 N N N -22.396 96.245 50.459 -0.636 -4.036 14.396 C2P DCA 47
DCA H2A AH2 H 0 1 N N N -30.396 115.461 38.706 -3.318 -2.357 -10.167 H2A DCA 48
DCA H61A AH61 H 0 0 N N N -25.785 113.158 37.785 -6.640 0.594 -9.141 H61A DCA 49
DCA H62A AH62 H 0 0 N N N -26.294 114.650 37.251 -6.156 1.366 -7.730 H62A DCA 50
DCA H8A AH8 H 0 1 N N N -26.708 111.570 42.294 -2.339 1.158 -4.775 H8A DCA 51
DCA H1B AH1* H 0 1 N N N -30.074 113.648 42.691 -0.568 -1.869 -6.313 H1B DCA 52
DCA H2B AH2* H 0 1 N N N -29.553 110.552 42.440 0.221 1.093 -6.470 H2B DCA 53
DCA HO2A AHO2 H 0 0 N N N -31.714 110.658 42.019 0.036 -0.206 -8.389 HO2A DCA 54
DCA H3B AH3* H 0 1 N N N -30.696 110.268 44.567 2.198 0.613 -5.287 H3B DCA 55
DCA HOA8 8HOA H 0 0 N N N -34.508 112.426 45.713 5.877 -1.252 -6.802 HOA8 DCA 56
DCA HOA9 9HOA H 0 0 N N N -33.848 110.158 45.923 3.649 0.412 -7.960 HOA9 DCA 57
DCA H4B AH4* H 0 1 N N N -29.366 112.384 45.931 1.223 -1.872 -4.108 H4B DCA 58
DCA H51A AH51 H 0 0 N N N -27.336 111.214 45.852 0.964 1.046 -3.240 H51A DCA 59
DCA H52A AH52 H 0 0 N N N -28.605 110.060 45.887 2.354 -0.011 -2.899 H52A DCA 60
DCA HOA2 2HOA H 0 0 N N N -29.315 107.328 44.265 2.845 -0.522 -0.294 HOA2 DCA 61
DCA HOA5 5HOA H 0 0 N N N -25.454 106.707 47.624 2.577 -0.063 2.219 HOA5 DCA 62
DCA H121 1H12 H 0 0 N N N -26.719 105.498 44.047 0.193 2.365 3.981 H121 DCA 63
DCA H122 2H12 H 0 0 N N N -25.821 104.896 45.324 1.583 1.306 4.322 H122 DCA 64
DCA H131 1H13 H 0 0 N N N -27.631 101.809 44.370 1.366 -0.476 6.160 H131 DCA 65
DCA H132 2H13 H 0 0 N N N -26.690 103.035 43.342 -0.250 -0.785 6.837 H132 DCA 66
DCA H133 3H13 H 0 0 N N N -25.991 102.567 44.796 0.077 -1.131 5.122 H133 DCA 67
DCA H141 1H14 H 0 0 N N N -29.694 103.236 44.370 -1.956 2.039 5.210 H141 DCA 68
DCA H142 2H14 H 0 0 N N N -29.585 105.042 44.815 -1.990 0.334 4.700 H142 DCA 69
DCA H143 3H14 H 0 0 N N N -28.921 104.589 43.349 -2.099 0.749 6.428 H143 DCA 70
DCA H10 H10 H 0 1 N N N -28.530 104.026 47.095 1.419 1.825 6.809 H10 DCA 71
DCA HO1 HO1 H 0 1 N N N -29.006 101.709 47.131 -0.909 3.326 6.156 HO1 DCA 72
DCA HN8 HN8 H 0 1 N N N -26.980 100.908 46.538 0.695 -0.038 8.368 HN8 DCA 73
DCA H71 1H7 H 0 1 N N N -24.246 101.395 47.422 -1.781 0.082 9.719 H71 DCA 74
DCA H72 2H7 H 0 1 N N N -25.055 101.844 48.827 -0.600 1.056 10.626 H72 DCA 75
DCA H61 1H6 H 0 1 N N N -26.267 99.413 48.862 0.920 -0.898 10.744 H61 DCA 76
DCA H62 2H6 H 0 1 N N N -25.367 98.973 47.507 -0.260 -1.872 9.837 H62 DCA 77
DCA HN4 HN4 H 0 1 N N N -24.480 97.381 49.154 0.198 -3.029 12.227 HN4 DCA 78
DCA H31 1H3 H 0 1 N N N -21.785 98.356 50.253 -2.279 -2.908 13.578 H31 DCA 79
DCA H32 2H3 H 0 1 N N N -22.854 98.118 51.533 -1.097 -1.934 14.485 H32 DCA 80
DCA H21 1H2 H 0 1 N N N -21.537 96.018 51.133 -1.159 -4.266 15.324 H21 DCA 81
DCA H22 2H2 H 0 1 N N N -23.296 95.634 50.702 -0.758 -4.863 13.696 H22 DCA 82
DCA H23 3H2 H 0 1 N N N -22.227 95.872 49.421 0.423 -3.888 14.603 H23 DCA 83
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DCA N1A C2A SING Y N 1
DCA N1A C6A DOUB Y N 2
DCA C2A N3A DOUB Y N 3
DCA C2A H2A SING N N 4
DCA N3A C4A SING Y N 5
DCA C4A C5A DOUB Y N 6
DCA C4A N9A SING Y N 7
DCA C5A C6A SING Y N 8
DCA C5A N7A SING Y N 9
DCA C6A N6A SING N N 10
DCA N6A H61A SING N N 11
DCA N6A H62A SING N N 12
DCA N7A C8A DOUB Y N 13
DCA C8A N9A SING Y N 14
DCA C8A H8A SING N N 15
DCA N9A C1B SING N N 16
DCA C1B C2B SING N N 17
DCA C1B O4B SING N N 18
DCA C1B H1B SING N N 19
DCA C2B O2B SING N N 20
DCA C2B C3B SING N N 21
DCA C2B H2B SING N N 22
DCA O2B HO2A SING N N 23
DCA C3B O3B SING N N 24
DCA C3B C4B SING N N 25
DCA C3B H3B SING N N 26
DCA O3B P3B SING N N 27
DCA P3B O7A DOUB N N 28
DCA P3B O8A SING N N 29
DCA P3B O9A SING N N 30
DCA O8A HOA8 SING N N 31
DCA O9A HOA9 SING N N 32
DCA C4B O4B SING N N 33
DCA C4B C5B SING N N 34
DCA C4B H4B SING N N 35
DCA C5B O5B SING N N 36
DCA C5B H51A SING N N 37
DCA C5B H52A SING N N 38
DCA O5B P1A SING N N 39
DCA P1A O1A DOUB N N 40
DCA P1A O2A SING N N 41
DCA P1A O3A SING N N 42
DCA O2A HOA2 SING N N 43
DCA O3A P2A SING N N 44
DCA P2A O4A DOUB N N 45
DCA P2A O5A SING N N 46
DCA P2A O6A SING N N 47
DCA O5A HOA5 SING N N 48
DCA O6A CCP SING N N 49
DCA CBP CCP SING N N 50
DCA CBP CDP SING N N 51
DCA CBP CEP SING N N 52
DCA CBP CAP SING N N 53
DCA CCP H121 SING N N 54
DCA CCP H122 SING N N 55
DCA CDP H131 SING N N 56
DCA CDP H132 SING N N 57
DCA CDP H133 SING N N 58
DCA CEP H141 SING N N 59
DCA CEP H142 SING N N 60
DCA CEP H143 SING N N 61
DCA CAP OAP SING N N 62
DCA CAP C9P SING N N 63
DCA CAP H10 SING N N 64
DCA OAP HO1 SING N N 65
DCA C9P O9P DOUB N N 66
DCA C9P N8P SING N N 67
DCA N8P C7P SING N N 68
DCA N8P HN8 SING N N 69
DCA C7P C6P SING N N 70
DCA C7P H71 SING N N 71
DCA C7P H72 SING N N 72
DCA C6P C5P SING N N 73
DCA C6P H61 SING N N 74
DCA C6P H62 SING N N 75
DCA C5P O5P DOUB N N 76
DCA C5P N4P SING N N 77
DCA N4P C3P SING N N 78
DCA N4P HN4 SING N N 79
DCA C3P C2P SING N N 80
DCA C3P H31 SING N N 81
DCA C3P H32 SING N N 82
DCA C2P H21 SING N N 83
DCA C2P H22 SING N N 84
DCA C2P H23 SING N N 85
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DCA SMILES ACDLabs 10.04 "O=C(NCC)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O"
DCA SMILES_CANONICAL CACTVS 3.341 "CCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P@](O)(=O)O[P@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23"
DCA SMILES CACTVS 3.341 "CCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23"
DCA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCNC(=O)CCNC(=O)[C@@H](C(C)(C)CO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O"
DCA SMILES "OpenEye OEToolkits" 1.5.0 "CCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O"
DCA InChI InChI 1.03
;InChI=1S/C21H36N7O16P3/c1-4-23-12(29)5-6-24-19(32)16(31)21(2,3)8-41-47(38,39)44-46(36,37)40-7-11-15(43-45(33,34)35)14(30)20(42-11)28-10-27-13-17(22)25-9-26-18(13)28/h9-11,14-16,20,30-31H,4-8H2,1-3H3,(H,23,29)(H,24,32)(H,36,37)(H,38,39)(H2,22,25,26)(H2,33,34,35)/t11-,14-,15-,16+,20-/m1/s1
;
DCA InChIKey InChI 1.03 ILWZMFJBPIYQKW-IBOSZNHHSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DCA "SYSTEMATIC NAME" ACDLabs 10.04
"[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (3R)-4-{[3-(ethylamino)-3-oxopropyl]amino}-3-hydroxy-2,2-dimethyl-4-oxobutyl dihydrogen diphosphate (non-preferred name)"
DCA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxy-oxolan-2-yl]methyl [[(3R)-4-[(3-ethylamino-3-oxo-propyl)amino]-3-hydroxy-2,2-dimethyl-4-oxo-butoxy]-hydroxy-phosphoryl] hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DCA "Create component" 1999-07-08 RCSB
DCA "Modify descriptor" 2011-06-04 RCSB
#