data_DCB # _chem_comp.id DCB _chem_comp.name 2,4-DINITROPHENYL-2-DEOXY-2-FLUORO-BETA-D-CELLOBIOSIDE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H23 F N2 O14" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2',4'-DINITROPHENYL-2DEOXY-2-FLURO-B-D-CELLOBIOSIDE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 510.379 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DCB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4A3H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DCB C1A C1A C 0 1 N N S N N N 61.651 41.491 36.136 1.346 1.019 0.763 C1A DCB 1 DCB C2A C2A C 0 1 N N R N N N 60.550 41.961 35.226 0.338 2.135 1.046 C2A DCB 2 DCB C3A C3A C 0 1 N N S N N N 60.801 43.406 34.807 -0.927 1.523 1.660 C3A DCB 3 DCB C4A C4A C 0 1 N N S N N N 61.351 44.064 36.095 -1.429 0.407 0.736 C4A DCB 4 DCB C5A C5A C 0 1 N N R N N N 62.777 43.584 36.295 -0.288 -0.578 0.475 C5A DCB 5 DCB C6A C6A C 0 1 N N N N N N 63.429 44.052 37.598 -0.789 -1.712 -0.422 C6A DCB 6 DCB O1A O1A O 0 1 N N N N N N 61.061 41.278 37.364 2.540 1.584 0.219 O1A DCB 7 DCB F2A F2A F 0 1 N N N N N N 60.653 41.180 34.092 0.894 3.055 1.941 F2A DCB 8 DCB O3A O3A O 0 1 N N N N N N 59.482 43.860 34.539 -1.935 2.527 1.792 O3A DCB 9 DCB O4A O4A O 0 1 N N N N N N 61.425 45.468 35.815 -2.518 -0.276 1.360 O4A DCB 10 DCB O5A O5A O 0 1 N N N N N N 62.849 42.175 36.173 0.792 0.093 -0.170 O5A DCB 11 DCB O6A O6A O 0 1 N N N N N N 62.606 43.624 38.689 0.234 -2.700 -0.557 O6A DCB 12 DCB C1B C1B C 0 1 N N S N N N 61.015 46.226 36.949 -3.506 -0.488 0.350 C1B DCB 13 DCB C2B C2B C 0 1 N N R N N N 61.368 47.677 36.567 -4.577 -1.445 0.880 C2B DCB 14 DCB C3B C3B C 0 1 N N S N N N 60.779 48.575 37.680 -5.614 -1.693 -0.220 C3B DCB 15 DCB C4B C4B C 0 1 N N S N N N 59.258 48.347 37.697 -6.136 -0.339 -0.715 C4B DCB 16 DCB C5B C5B C 0 1 N N R N N N 58.984 46.859 38.022 -4.947 0.533 -1.126 C5B DCB 17 DCB C6B C6B C 0 1 N N N N N N 57.501 46.505 38.088 -5.460 1.874 -1.655 C6B DCB 18 DCB O2B O2B O 0 1 N N N N N N 62.785 47.753 36.504 -3.968 -2.683 1.255 O2B DCB 19 DCB O3B O3B O 0 1 N N N N N N 60.989 49.921 37.235 -6.696 -2.464 0.305 O3B DCB 20 DCB O4B O4B O 0 1 N N N N N N 58.637 49.195 38.652 -6.994 -0.539 -1.840 O4B DCB 21 DCB O5B O5B O 0 1 N N N N N N 59.602 46.115 36.996 -4.103 0.759 0.001 O5B DCB 22 DCB O6B O6B O 0 1 N N N N N N 56.967 46.743 36.790 -4.361 2.643 -2.150 O6B DCB 23 DCB C1 C1 C 0 1 Y N N N N N 61.689 40.525 38.422 3.434 0.569 0.094 C1 DCB 24 DCB C2 C2 C 0 1 Y N N N N N 62.744 39.576 38.234 3.081 -0.718 0.475 C2 DCB 25 DCB C3 C3 C 0 1 Y N N N N N 63.252 38.728 39.150 3.992 -1.749 0.347 C3 DCB 26 DCB C4 C4 C 0 1 Y N N N N N 62.702 38.859 40.424 5.254 -1.499 -0.160 C4 DCB 27 DCB C5 C5 C 0 1 Y N N N N N 61.719 39.725 40.786 5.607 -0.218 -0.541 C5 DCB 28 DCB C6 C6 C 0 1 Y N N N N N 61.238 40.565 39.792 4.698 0.815 -0.420 C6 DCB 29 DCB N4 N4 N 1 1 N N N N N N 63.266 37.941 41.432 6.228 -2.606 -0.296 N4 DCB 30 DCB N6 N6 N 1 1 N N N N N N 60.188 41.480 40.210 5.078 2.187 -0.828 N6 DCB 31 DCB O41 O41 O -1 1 N N N N N N 64.127 37.191 41.021 5.917 -3.735 0.040 O41 DCB 32 DCB O42 O42 O 0 1 N N N N N N 62.831 38.041 42.542 7.340 -2.387 -0.742 O42 DCB 33 DCB O61 O61 O -1 1 N N N N N N 59.625 42.281 39.475 6.192 2.405 -1.270 O61 DCB 34 DCB O62 O62 O 0 1 N N N N N N 59.842 41.436 41.391 4.276 3.097 -0.721 O62 DCB 35 DCB HC1A HC1A H 0 0 N N N N N N 62.067 40.557 35.690 1.582 0.500 1.692 HC1A DCB 36 DCB HC2A HC2A H 0 0 N N N N N N 59.556 41.890 35.727 0.083 2.641 0.115 HC2A DCB 37 DCB HC3A HC3A H 0 0 N N N N N N 61.489 43.594 33.950 -0.693 1.108 2.640 HC3A DCB 38 DCB HC4A HC4A H 0 0 N N N N N N 60.720 43.828 36.983 -1.762 0.838 -0.208 HC4A DCB 39 DCB HC5A HC5A H 0 0 N N N N N N 63.370 44.062 35.481 0.056 -0.991 1.423 HC5A DCB 40 DCB H6A1 1H6A H 0 0 N N N N N N 64.485 43.710 37.696 -1.674 -2.165 0.026 H6A1 DCB 41 DCB HCA2 2HCA H 0 0 N N N N N N 63.623 45.149 37.611 -1.042 -1.314 -1.404 HCA2 DCB 42 DCB HO3A HO3A H 0 0 N N N N N N 59.638 44.760 34.278 -1.577 3.207 2.379 HO3A DCB 43 DCB HO6A HO6A H 0 0 N N N N N N 63.010 43.914 39.497 -0.122 -3.395 -1.128 HO6A DCB 44 DCB HC1B HC1B H 0 0 N N N N N N 61.473 45.909 37.915 -3.035 -0.924 -0.531 HC1B DCB 45 DCB HC2B HC2B H 0 0 N N N N N N 60.955 48.004 35.584 -5.065 -1.001 1.748 HC2B DCB 46 DCB HC3B HC3B H 0 0 N N N N N N 61.231 48.369 38.678 -5.149 -2.231 -1.047 HC3B DCB 47 DCB HC4B HC4B H 0 0 N N N N N N 58.828 48.594 36.698 -6.691 0.152 0.084 HC4B DCB 48 DCB HC5B HC5B H 0 0 N N N N N N 59.388 46.630 39.035 -4.381 0.028 -1.908 HC5B DCB 49 DCB H6B1 1H6B H 0 0 N N N N N N 57.311 45.471 38.459 -5.950 2.419 -0.848 H6B1 DCB 50 DCB H6B2 2H6B H 0 0 N N N N N N 56.954 47.046 38.895 -6.173 1.699 -2.461 H6B2 DCB 51 DCB HO2B HO2B H 0 0 N N N N N N 63.002 48.647 36.268 -3.320 -2.479 1.942 HO2B DCB 52 DCB HO3B HO3B H 0 0 N N N N N N 60.627 50.472 37.918 -6.319 -3.299 0.615 HO3B DCB 53 DCB HO4B HO4B H 0 0 N N N N N N 57.697 49.054 38.662 -7.723 -1.099 -1.540 HO4B DCB 54 DCB HO6B HO6B H 0 0 N N N N N N 56.043 46.522 36.831 -4.727 3.478 -2.472 HO6B DCB 55 DCB HC2 HC2 H 0 1 N N N N N N 63.232 39.485 37.249 2.096 -0.914 0.872 HC2 DCB 56 DCB HC3 HC3 H 0 1 N N N N N N 64.037 38.001 38.884 3.718 -2.751 0.644 HC3 DCB 57 DCB HC5 HC5 H 0 1 N N N N N N 61.336 39.744 41.820 6.594 -0.026 -0.936 HC5 DCB 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DCB C1A C2A SING N N 1 DCB C1A O1A SING N N 2 DCB C1A O5A SING N N 3 DCB C1A HC1A SING N N 4 DCB C2A C3A SING N N 5 DCB C2A F2A SING N N 6 DCB C2A HC2A SING N N 7 DCB C3A C4A SING N N 8 DCB C3A O3A SING N N 9 DCB C3A HC3A SING N N 10 DCB C4A C5A SING N N 11 DCB C4A O4A SING N N 12 DCB C4A HC4A SING N N 13 DCB C5A C6A SING N N 14 DCB C5A O5A SING N N 15 DCB C5A HC5A SING N N 16 DCB C6A O6A SING N N 17 DCB C6A H6A1 SING N N 18 DCB C6A HCA2 SING N N 19 DCB O1A C1 SING N N 20 DCB O3A HO3A SING N N 21 DCB O4A C1B SING N N 22 DCB O6A HO6A SING N N 23 DCB C1B C2B SING N N 24 DCB C1B O5B SING N N 25 DCB C1B HC1B SING N N 26 DCB C2B C3B SING N N 27 DCB C2B O2B SING N N 28 DCB C2B HC2B SING N N 29 DCB C3B C4B SING N N 30 DCB C3B O3B SING N N 31 DCB C3B HC3B SING N N 32 DCB C4B C5B SING N N 33 DCB C4B O4B SING N N 34 DCB C4B HC4B SING N N 35 DCB C5B C6B SING N N 36 DCB C5B O5B SING N N 37 DCB C5B HC5B SING N N 38 DCB C6B O6B SING N N 39 DCB C6B H6B1 SING N N 40 DCB C6B H6B2 SING N N 41 DCB O2B HO2B SING N N 42 DCB O3B HO3B SING N N 43 DCB O4B HO4B SING N N 44 DCB O6B HO6B SING N N 45 DCB C1 C2 DOUB Y N 46 DCB C1 C6 SING Y N 47 DCB C2 C3 SING Y N 48 DCB C2 HC2 SING N N 49 DCB C3 C4 DOUB Y N 50 DCB C3 HC3 SING N N 51 DCB C4 C5 SING Y N 52 DCB C4 N4 SING N N 53 DCB C5 C6 DOUB Y N 54 DCB C5 HC5 SING N N 55 DCB C6 N6 SING N N 56 DCB N4 O41 SING N N 57 DCB N4 O42 DOUB N N 58 DCB N6 O61 SING N N 59 DCB N6 O62 DOUB N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DCB SMILES ACDLabs 10.04 "[O-][N+](=O)c3ccc(OC2OC(C(OC1OC(C(O)C(O)C1O)CO)C(O)C2F)CO)c([N+]([O-])=O)c3" DCB SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@@H](O[C@H]2[C@H](O)[C@@H](F)[C@@H](O[C@@H]2CO)Oc3ccc(cc3[N+]([O-])=O)[N+]([O-])=O)[C@H](O)[C@@H](O)[C@@H]1O" DCB SMILES CACTVS 3.341 "OC[CH]1O[CH](O[CH]2[CH](O)[CH](F)[CH](O[CH]2CO)Oc3ccc(cc3[N+]([O-])=O)[N+]([O-])=O)[CH](O)[CH](O)[CH]1O" DCB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(c(cc1[N+](=O)[O-])[N+](=O)[O-])O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)F" DCB SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(c(cc1[N+](=O)[O-])[N+](=O)[O-])OC2C(C(C(C(O2)CO)OC3C(C(C(C(O3)CO)O)O)O)O)F" DCB InChI InChI 1.03 "InChI=1S/C18H23FN2O14/c19-11-13(25)16(35-18-15(27)14(26)12(24)9(4-22)33-18)10(5-23)34-17(11)32-8-2-1-6(20(28)29)3-7(8)21(30)31/h1-3,9-18,22-27H,4-5H2/t9-,10-,11-,12-,13-,14+,15-,16-,17-,18+/m1/s1" DCB InChIKey InChI 1.03 WFVCNOHOODVBQK-IUBYCILNSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DCB "SYSTEMATIC NAME" ACDLabs 10.04 "2,4-dinitrophenyl 2-deoxy-2-fluoro-4-O-beta-D-glucopyranosyl-beta-D-glucopyranoside" DCB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R,4S,5S,6R)-2-[(2R,3S,4S,5R,6S)-6-(2,4-dinitrophenoxy)-5-fluoro-4-hydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DCB "Create component" 1999-07-08 RCSB DCB "Modify descriptor" 2011-06-04 RCSB DCB "Modify synonyms" 2021-03-13 RCSB DCB "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id DCB _pdbx_chem_comp_synonyms.name "2',4'-DINITROPHENYL-2DEOXY-2-FLURO-B-D-CELLOBIOSIDE" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id DCB _pdbx_chem_comp_pcm.modified_residue_id GLU _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1A _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OE2 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #