data_DCM # _chem_comp.id DCM _chem_comp.name "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H14 N3 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 307.197 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DCM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1B5D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DCM N1 N1 N 0 1 N N N 17.665 5.461 24.858 -0.267 -0.584 2.528 N1 DCM 1 DCM C2 C2 C 0 1 N N N 17.107 6.326 23.894 0.270 0.648 2.563 C2 DCM 2 DCM N3 N3 N 0 1 N N N 17.810 7.394 23.486 1.037 1.035 3.581 N3 DCM 3 DCM C4 C4 C 0 1 N N N 18.986 7.689 24.058 1.291 0.212 4.589 C4 DCM 4 DCM C5 C5 C 0 1 N N N 19.565 6.853 25.064 0.746 -1.088 4.580 C5 DCM 5 DCM C6 C6 C 0 1 N N N 18.878 5.758 25.426 -0.035 -1.465 3.541 C6 DCM 6 DCM O2 O2 O 0 1 N N N 15.969 6.086 23.460 0.052 1.424 1.647 O2 DCM 7 DCM N4 N4 N 0 1 N N N 19.604 8.812 23.685 2.085 0.622 5.635 N4 DCM 8 DCM "C1'" C1* C 0 1 N N R 16.828 4.369 25.392 -1.106 -0.981 1.395 "C1'" DCM 9 DCM "C2'" C2* C 0 1 N N N 16.506 3.269 24.383 -2.322 -0.040 1.288 "C2'" DCM 10 DCM "C3'" C3* C 0 1 N N S 16.218 2.103 25.320 -2.206 0.569 -0.129 "C3'" DCM 11 DCM "C4'" C4* C 0 1 N N R 17.265 2.296 26.412 -1.300 -0.459 -0.852 "C4'" DCM 12 DCM "O4'" O4* O 0 1 N N N 17.522 3.731 26.451 -0.363 -0.863 0.171 "O4'" DCM 13 DCM "O3'" O3* O 0 1 N N N 14.918 2.209 25.883 -3.488 0.649 -0.756 "O3'" DCM 14 DCM "C5'" C5* C 0 1 N N N 18.568 1.552 26.196 -0.571 0.196 -2.027 "C5'" DCM 15 DCM "O5'" O5* O 0 1 N N N 18.420 0.159 26.583 0.255 -0.772 -2.674 "O5'" DCM 16 DCM P P P 0 1 N N N 19.099 -1.021 25.745 0.987 -0.017 -3.894 P DCM 17 DCM O1P O1P O 0 1 N N N 18.469 -0.811 24.412 1.802 1.099 -3.365 O1P DCM 18 DCM O2P O2P O 0 1 N N N 20.543 -0.660 25.874 1.941 -1.055 -4.672 O2P DCM 19 DCM O3P O3P O 0 1 N N N 18.611 -2.167 26.561 -0.119 0.560 -4.910 O3P DCM 20 DCM H5 H5 H 0 1 N N N 20.532 7.050 25.556 0.943 -1.771 5.394 H5 DCM 21 DCM H6 H6 H 0 1 N N N 19.313 5.098 26.195 -0.467 -2.454 3.514 H6 DCM 22 DCM HN41 1HN4 H 0 0 N N N 20.498 9.036 24.120 2.461 1.516 5.636 HN41 DCM 23 DCM HN42 2HN4 H 0 0 N N N 18.967 9.599 23.807 2.265 0.019 6.373 HN42 DCM 24 DCM "H1'" H1* H 0 1 N N N 15.873 4.854 25.703 -1.444 -2.009 1.526 "H1'" DCM 25 DCM "H2'1" 1H2* H 0 0 N N N 15.700 3.508 23.650 -3.250 -0.602 1.387 "H2'1" DCM 26 DCM "H2'2" 2H2* H 0 0 N N N 17.285 3.082 23.608 -2.266 0.742 2.046 "H2'2" DCM 27 DCM "H3'" H3* H 0 1 N N N 16.258 1.112 24.810 -1.731 1.549 -0.094 "H3'" DCM 28 DCM "H4'" H4* H 0 1 N N N 16.865 1.876 27.364 -1.885 -1.313 -1.193 "H4'" DCM 29 DCM "HO3'" *HO3 H 0 0 N N N 14.738 1.481 26.467 -4.031 1.232 -0.207 "HO3'" DCM 30 DCM "H5'1" 1H5* H 0 0 N N N 18.939 1.656 25.149 -1.302 0.583 -2.737 "H5'1" DCM 31 DCM "H5'2" 2H5* H 0 0 N N N 19.420 2.042 26.722 0.046 1.015 -1.659 "H5'2" DCM 32 DCM HOP2 2HOP H 0 0 N N N 20.946 -1.361 25.376 2.359 -0.564 -5.392 HOP2 DCM 33 DCM HOP3 3HOP H 0 0 N N N 19.014 -2.868 26.063 -0.626 -0.198 -5.231 HOP3 DCM 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DCM N1 C2 SING N N 1 DCM N1 C6 SING N N 2 DCM N1 "C1'" SING N N 3 DCM C2 N3 SING N N 4 DCM C2 O2 DOUB N N 5 DCM N3 C4 DOUB N N 6 DCM C4 C5 SING N N 7 DCM C4 N4 SING N N 8 DCM C5 C6 DOUB N N 9 DCM C5 H5 SING N N 10 DCM C6 H6 SING N N 11 DCM N4 HN41 SING N N 12 DCM N4 HN42 SING N N 13 DCM "C1'" "C2'" SING N N 14 DCM "C1'" "O4'" SING N N 15 DCM "C1'" "H1'" SING N N 16 DCM "C2'" "C3'" SING N N 17 DCM "C2'" "H2'1" SING N N 18 DCM "C2'" "H2'2" SING N N 19 DCM "C3'" "C4'" SING N N 20 DCM "C3'" "O3'" SING N N 21 DCM "C3'" "H3'" SING N N 22 DCM "C4'" "O4'" SING N N 23 DCM "C4'" "C5'" SING N N 24 DCM "C4'" "H4'" SING N N 25 DCM "O3'" "HO3'" SING N N 26 DCM "C5'" "O5'" SING N N 27 DCM "C5'" "H5'1" SING N N 28 DCM "C5'" "H5'2" SING N N 29 DCM "O5'" P SING N N 30 DCM P O1P DOUB N N 31 DCM P O2P SING N N 32 DCM P O3P SING N N 33 DCM O2P HOP2 SING N N 34 DCM O3P HOP3 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DCM SMILES ACDLabs 10.04 "O=C1N=C(N)C=CN1C2OC(C(O)C2)COP(=O)(O)O" DCM SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2" DCM SMILES CACTVS 3.341 "NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2" DCM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)COP(=O)(O)O)O" DCM SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2C=CC(=NC2=O)N)COP(=O)(O)O)O" DCM InChI InChI 1.03 "InChI=1S/C9H14N3O7P/c10-7-1-2-12(9(14)11-7)8-3-5(13)6(19-8)4-18-20(15,16)17/h1-2,5-6,8,13H,3-4H2,(H2,10,11,14)(H2,15,16,17)/t5-,6+,8+/m0/s1" DCM InChIKey InChI 1.03 NCMVOABPESMRCP-SHYZEUOFSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DCM "SYSTEMATIC NAME" ACDLabs 10.04 ;2'-deoxy-5'-cytidylic acid ; DCM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DCM "Create component" 1999-07-08 EBI DCM "Modify descriptor" 2011-06-04 RCSB #