data_DCS
#
_chem_comp.id DCS
_chem_comp.name "D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H16 N3 O7 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "D-PYRIDOXYL-N,O-CYCLOSERYLAMIDE-5-MONOPHOSPHATE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-10-28
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces SCP
_chem_comp.formula_weight 333.234
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DCS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1D7S
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DCS N1 N1 N 0 1 Y N N 17.453 53.482 13.804 3.732 0.488 0.889 N1 DCS 1
DCS C2 C2 C 0 1 Y N N 16.379 53.724 14.600 3.946 0.195 -0.378 C2 DCS 2
DCS C2A C2A C 0 1 N N N 15.295 54.664 14.153 5.328 0.351 -0.957 C2A DCS 3
DCS C3 C3 C 0 1 Y N N 16.366 53.125 15.872 2.910 -0.249 -1.186 C3 DCS 4
DCS O3 O3 O 0 1 N N N 15.300 53.461 16.621 3.135 -0.549 -2.492 O3 DCS 5
DCS C4 C4 C 0 1 Y N N 17.409 52.303 16.296 1.639 -0.393 -0.637 C4 DCS 6
DCS C4A C4A C 0 1 N N N 17.439 51.643 17.599 0.486 -0.880 -1.477 C4A DCS 7
DCS C5 C5 C 0 1 Y N N 18.452 52.060 15.368 1.459 -0.074 0.698 C5 DCS 8
DCS C6 C6 C 0 1 Y N N 18.475 52.654 14.146 2.539 0.368 1.438 C6 DCS 9
DCS C5A C5A C 0 1 N N N 19.644 51.169 15.818 0.100 -0.208 1.337 C5A DCS 10
DCS O4P O4P O 0 1 N N N 19.332 49.771 15.880 0.180 0.179 2.710 O4P DCS 11
DCS P P P 0 1 N N N 20.233 48.741 16.735 -1.297 0.013 3.326 P DCS 12
DCS O1P O1P O 0 1 N N N 20.077 49.119 18.148 -1.727 -1.397 3.203 O1P DCS 13
DCS O2P O2P O 0 1 N N N 19.704 47.320 16.453 -1.281 0.435 4.880 O2P DCS 14
DCS O3P O3P O 0 1 N N N 21.588 48.863 16.198 -2.323 0.958 2.524 O3P DCS 15
DCS N N N 0 1 N N N 16.400 51.583 18.380 -0.182 0.268 -2.102 N DCS 16
DCS CA CA C 0 1 N N R 16.435 51.972 19.667 -1.289 -0.271 -2.902 CA DCS 17
DCS C C C 0 1 N N N 15.241 51.886 20.374 -2.579 -0.273 -2.103 C DCS 18
DCS O O O 0 1 N N N 14.067 52.401 20.322 -2.718 -0.658 -0.961 O DCS 19
DCS ND ND N 0 1 N N N 15.422 51.083 21.375 -3.545 0.239 -2.896 ND DCS 20
DCS OG OG O 0 1 N N N 16.765 50.604 21.312 -3.050 0.564 -4.180 OG DCS 21
DCS CB CB C 0 1 N N N 17.405 51.175 20.255 -1.616 0.664 -4.088 CB DCS 22
DCS H2A1 1H2A H 0 0 N N N 14.413 54.862 14.806 5.880 -0.580 -0.835 H2A1 DCS 23
DCS H2A2 2H2A H 0 0 N N N 15.765 55.641 13.893 5.253 0.593 -2.017 H2A2 DCS 24
DCS H2A3 3H2A H 0 0 N N N 14.923 54.321 13.159 5.851 1.154 -0.437 H2A3 DCS 25
DCS HO3 HO3 H 0 1 N N N 15.291 53.056 17.480 2.980 0.260 -2.996 HO3 DCS 26
DCS H4A1 1H4A H 0 0 N N N 17.799 50.600 17.438 0.859 -1.549 -2.253 H4A1 DCS 27
DCS H4A2 2H4A H 0 0 N N N 18.273 52.094 18.184 -0.222 -1.414 -0.846 H4A2 DCS 28
DCS H6 H6 H 0 1 N N N 19.306 52.467 13.445 2.405 0.618 2.480 H6 DCS 29
DCS H5A1 1H5A H 0 0 N N N 20.532 51.344 15.167 -0.609 0.434 0.818 H5A1 DCS 30
DCS H5A2 2H5A H 0 0 N N N 20.052 51.523 16.793 -0.231 -1.244 1.271 H5A2 DCS 31
DCS HOP2 2HOP H 0 0 N N N 20.234 46.713 16.956 -2.183 0.321 5.210 HOP2 DCS 32
DCS HOP3 3HOP H 0 0 N N N 22.118 48.256 16.701 -2.008 1.866 2.629 HOP3 DCS 33
DCS HN HN H 0 1 N N N 16.055 50.623 18.358 -0.598 0.803 -1.355 HN DCS 34
DCS HA HA H 0 1 N N N 16.653 53.065 19.695 -1.054 -1.275 -3.256 HA DCS 35
DCS HND HND H 0 1 N N N 14.685 50.877 22.049 -4.466 0.366 -2.619 HND DCS 36
DCS HB1 1HB H 0 1 N N N 17.882 50.445 19.559 -1.312 1.688 -3.868 HB1 DCS 37
DCS HB2 2HB H 0 1 N N N 18.342 51.716 20.524 -1.144 0.308 -5.004 HB2 DCS 38
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DCS N1 C2 DOUB Y N 1
DCS N1 C6 SING Y N 2
DCS C2 C2A SING N N 3
DCS C2 C3 SING Y N 4
DCS C2A H2A1 SING N N 5
DCS C2A H2A2 SING N N 6
DCS C2A H2A3 SING N N 7
DCS C3 O3 SING N N 8
DCS C3 C4 DOUB Y N 9
DCS O3 HO3 SING N N 10
DCS C4 C4A SING N N 11
DCS C4 C5 SING Y N 12
DCS C4A N SING N N 13
DCS C4A H4A1 SING N N 14
DCS C4A H4A2 SING N N 15
DCS C5 C6 DOUB Y N 16
DCS C5 C5A SING N N 17
DCS C6 H6 SING N N 18
DCS C5A O4P SING N N 19
DCS C5A H5A1 SING N N 20
DCS C5A H5A2 SING N N 21
DCS O4P P SING N N 22
DCS P O1P DOUB N N 23
DCS P O2P SING N N 24
DCS P O3P SING N N 25
DCS O2P HOP2 SING N N 26
DCS O3P HOP3 SING N N 27
DCS N CA SING N N 28
DCS N HN SING N N 29
DCS CA C SING N N 30
DCS CA CB SING N N 31
DCS CA HA SING N N 32
DCS C O DOUB N N 33
DCS C ND SING N N 34
DCS ND OG SING N N 35
DCS ND HND SING N N 36
DCS OG CB SING N N 37
DCS CB HB1 SING N N 38
DCS CB HB2 SING N N 39
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DCS SMILES ACDLabs 10.04 "O=C2NOCC2NCc1c(cnc(c1O)C)COP(=O)(O)O"
DCS SMILES_CANONICAL CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(CN[C@@H]2CONC2=O)c1O"
DCS SMILES CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(CN[CH]2CONC2=O)c1O"
DCS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@@H]2CONC2=O)O"
DCS SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC2CONC2=O)O"
DCS InChI InChI 1.03 "InChI=1S/C11H16N3O7P/c1-6-10(15)8(3-13-9-5-20-14-11(9)16)7(2-12-6)4-21-22(17,18)19/h2,9,13,15H,3-5H2,1H3,(H,14,16)(H2,17,18,19)/t9-/m1/s1"
DCS InChIKey InChI 1.03 NNRZSZJOQKAGTO-SECBINFHSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DCS "SYSTEMATIC NAME" ACDLabs 10.04 "[5-hydroxy-6-methyl-4-({[(4R)-3-oxoisoxazolidin-4-yl]amino}methyl)pyridin-3-yl]methyl dihydrogen phosphate"
DCS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[5-hydroxy-6-methyl-4-[[[(4R)-3-oxo-1,2-oxazolidin-4-yl]amino]methyl]pyridin-3-yl]methyl dihydrogen phosphate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DCS "Create component" 1999-10-28 RCSB
DCS "Modify descriptor" 2011-06-04 RCSB
DCS "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id DCS
_pdbx_chem_comp_synonyms.name "D-PYRIDOXYL-N,O-CYCLOSERYLAMIDE-5-MONOPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##