data_DCT # _chem_comp.id DCT _chem_comp.name ;2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE ; _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H16 N3 O12 P3" _chem_comp.mon_nstd_parent_comp_id DC _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 451.158 _chem_comp.one_letter_code C _chem_comp.three_letter_code DCT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1BPY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DCT N1 N1 N 0 1 N N N 7.162 7.704 10.234 0.018 0.584 -5.300 N1 DCT 1 DCT C2 C2 C 0 1 N N N 7.982 8.132 9.273 0.566 -0.638 -5.179 C2 DCT 2 DCT N3 N3 N 0 1 N N N 9.294 8.140 9.424 1.626 -0.991 -5.905 N3 DCT 3 DCT C4 C4 C 0 1 N N N 9.825 7.680 10.544 2.168 -0.143 -6.769 C4 DCT 4 DCT C5 C5 C 0 1 N N N 9.017 7.157 11.571 1.620 1.147 -6.916 C5 DCT 5 DCT C6 C6 C 0 1 N N N 7.700 7.166 11.356 0.540 1.489 -6.175 C6 DCT 6 DCT O2 O2 O 0 1 N N N 7.498 8.562 8.210 0.086 -1.436 -4.392 O2 DCT 7 DCT N4 N4 N 0 1 N N N 11.150 7.697 10.651 3.263 -0.518 -7.513 N4 DCT 8 DCT "C1'" C1* C 0 1 N N R 5.815 7.559 9.988 -1.146 0.943 -4.488 "C1'" DCT 9 DCT "C2'" C2* C 0 1 N N N 5.442 6.098 9.755 -2.311 -0.019 -4.787 "C2'" DCT 10 DCT "C3'" C3* C 0 1 N N N 3.983 6.075 10.091 -2.639 -0.656 -3.415 "C3'" DCT 11 DCT "C4'" C4* C 0 1 N N S 3.853 7.149 11.202 -2.033 0.372 -2.427 "C4'" DCT 12 DCT "O4'" O4* O 0 1 N N N 5.053 7.976 11.022 -0.828 0.813 -3.092 "O4'" DCT 13 DCT "C5'" C5* C 0 1 N N N 3.747 6.584 12.617 -1.701 -0.294 -1.090 "C5'" DCT 14 DCT "O5'" O5* O 0 1 N N N 5.064 6.292 13.141 -1.145 0.674 -0.199 "O5'" DCT 15 DCT PA PA P 0 1 N N S 5.334 5.276 14.392 -0.822 -0.092 1.178 PA DCT 16 DCT O1A O1A O 0 1 N N N 4.183 5.328 15.412 0.143 -1.184 0.920 O1A DCT 17 DCT O2A O2A O 0 1 N N N 6.688 5.440 14.799 -2.181 -0.709 1.781 O2A DCT 18 DCT O3A O3A O 0 1 N N N 5.360 3.841 13.666 -0.189 0.944 2.234 O3A DCT 19 DCT PB PB P 0 1 N N R 4.272 2.742 13.418 0.107 0.115 3.581 PB DCT 20 DCT O1B O1B O 0 1 N N N 4.415 2.180 11.967 1.058 -0.980 3.286 O1B DCT 21 DCT O2B O2B O 0 1 N N N 2.937 3.290 13.829 -1.267 -0.505 4.144 O2B DCT 22 DCT O3B O3B O 0 1 N N N 4.807 1.693 14.410 0.745 1.096 4.687 O3B DCT 23 DCT PG PG P 0 1 N N N 4.477 1.488 15.955 1.015 0.205 6.000 PG DCT 24 DCT O1G O1G O 0 1 N N N 3.954 2.777 16.434 1.952 -0.891 5.668 O1G DCT 25 DCT O2G O2G O 0 1 N N N 3.602 0.301 16.084 1.656 1.128 7.152 O2G DCT 26 DCT O3G O3G O 0 1 N N N 5.965 1.242 16.383 -0.374 -0.416 6.522 O3G DCT 27 DCT H5 H5 H 0 1 N N N 9.405 6.750 12.519 2.050 1.849 -7.615 H5 DCT 28 DCT H6 H6 H 0 1 N N N 7.042 6.719 12.121 0.100 2.471 -6.272 H6 DCT 29 DCT HN41 1HN4 H 0 0 N N N 11.559 7.342 11.515 3.640 -1.406 -7.407 HN41 DCT 30 DCT HN42 2HN4 H 0 0 N N N 11.489 8.644 10.482 3.655 0.102 -8.147 HN42 DCT 31 DCT "H1'" H1* H 0 1 N N N 5.621 8.180 9.082 -1.448 1.968 -4.706 "H1'" DCT 32 DCT "H2'" 1H2* H 0 1 N N N 5.695 5.706 8.742 -3.172 0.529 -5.169 "H2'" DCT 33 DCT "H2''" 2H2* H 0 0 N N N 6.063 5.361 10.316 -2.000 -0.785 -5.498 "H2''" DCT 34 DCT "H3'1" 1H3* H 0 0 N N N 3.305 6.227 9.219 -3.716 -0.743 -3.274 "H3'1" DCT 35 DCT "H3'2" 2H3* H 0 0 N N N 3.588 5.070 10.370 -2.155 -1.627 -3.311 "H3'2" DCT 36 DCT "H4'" H4* H 0 1 N N N 2.900 7.720 11.101 -2.715 1.209 -2.278 "H4'" DCT 37 DCT "H5'" 1H5* H 0 1 N N N 3.171 7.258 13.292 -2.611 -0.708 -0.655 "H5'" DCT 38 DCT "H5''" 2H5* H 0 0 N N N 3.075 5.694 12.660 -0.980 -1.095 -1.253 "H5''" DCT 39 DCT HOA2 2HOA H 0 0 N N N 6.845 4.849 15.526 -2.781 0.033 1.934 HOA2 DCT 40 DCT HOB2 2HOB H 0 0 N N N 2.277 2.623 13.678 -1.857 0.239 4.322 HOB2 DCT 41 DCT HOG2 2HOG H 0 0 N N N 3.405 0.178 17.005 1.802 0.557 7.919 HOG2 DCT 42 DCT HOG3 3HOG H 0 0 N N N 5.768 1.119 17.304 -0.955 0.329 6.727 HOG3 DCT 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DCT N1 C2 SING N N 1 DCT N1 C6 SING N N 2 DCT N1 "C1'" SING N N 3 DCT C2 N3 SING N N 4 DCT C2 O2 DOUB N N 5 DCT N3 C4 DOUB N N 6 DCT C4 C5 SING N N 7 DCT C4 N4 SING N N 8 DCT C5 C6 DOUB N N 9 DCT C5 H5 SING N N 10 DCT C6 H6 SING N N 11 DCT N4 HN41 SING N N 12 DCT N4 HN42 SING N N 13 DCT "C1'" "C2'" SING N N 14 DCT "C1'" "O4'" SING N N 15 DCT "C1'" "H1'" SING N N 16 DCT "C2'" "C3'" SING N N 17 DCT "C2'" "H2'" SING N N 18 DCT "C2'" "H2''" SING N N 19 DCT "C3'" "C4'" SING N N 20 DCT "C3'" "H3'1" SING N N 21 DCT "C3'" "H3'2" SING N N 22 DCT "C4'" "O4'" SING N N 23 DCT "C4'" "C5'" SING N N 24 DCT "C4'" "H4'" SING N N 25 DCT "C5'" "O5'" SING N N 26 DCT "C5'" "H5'" SING N N 27 DCT "C5'" "H5''" SING N N 28 DCT "O5'" PA SING N N 29 DCT PA O1A DOUB N N 30 DCT PA O2A SING N N 31 DCT PA O3A SING N N 32 DCT O2A HOA2 SING N N 33 DCT O3A PB SING N N 34 DCT PB O1B DOUB N N 35 DCT PB O2B SING N N 36 DCT PB O3B SING N N 37 DCT O2B HOB2 SING N N 38 DCT O3B PG SING N N 39 DCT PG O1G DOUB N N 40 DCT PG O2G SING N N 41 DCT PG O3G SING N N 42 DCT O2G HOG2 SING N N 43 DCT O3G HOG3 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DCT SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)N(C=C1)[C@H]2CC[C@@H](CO[P@@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)O2" DCT SMILES CACTVS 3.341 "NC1=NC(=O)N(C=C1)[CH]2CC[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2" DCT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1C[C@@H](O[C@@H]1CO[P@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)N2C=CC(=NC2=O)N" DCT SMILES "OpenEye OEToolkits" 1.5.0 "C1CC(OC1COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N2C=CC(=NC2=O)N" DCT InChI InChI 1.03 "InChI=1S/C9H16N3O12P3/c10-7-3-4-12(9(13)11-7)8-2-1-6(22-8)5-21-26(17,18)24-27(19,20)23-25(14,15)16/h3-4,6,8H,1-2,5H2,(H,17,18)(H,19,20)(H2,10,11,13)(H2,14,15,16)/t6-,8+/m0/s1" DCT InChIKey InChI 1.03 ARLKCWCREKRROD-POYBYMJQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DCT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)oxolan-2-yl]methyl (hydroxy-phosphonooxy-phosphoryl) hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DCT "Create component" 1999-07-08 RCSB DCT "Modify descriptor" 2011-06-04 RCSB #