data_DCZ # _chem_comp.id DCZ _chem_comp.name "2'-DEOXYCYTIDINE" _chem_comp.type "DNA OH 5 prime terminus" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H13 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-05-30 _chem_comp.pdbx_modified_date 2017-07-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 227.217 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DCZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1J90 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DCZ N1 N1 N 0 1 N N N 61.282 17.906 9.670 -0.234 -0.603 1.003 N1 DCZ 1 DCZ C2 C2 C 0 1 N N N 62.091 16.913 9.251 0.076 0.676 1.279 C2 DCZ 2 DCZ N3 N3 N 0 1 N N N 62.616 16.046 10.117 0.313 1.072 2.528 N3 DCZ 3 DCZ C4 C4 C 0 1 N N N 62.361 16.147 11.420 0.248 0.212 3.535 C4 DCZ 4 DCZ C5 C5 C 0 1 N N N 61.535 17.158 11.880 -0.068 -1.137 3.279 C5 DCZ 5 DCZ C6 C6 C 0 1 N N N 60.994 18.047 10.964 -0.312 -1.523 2.005 C6 DCZ 6 DCZ O2 O2 O 0 1 N N N 62.369 16.787 7.960 0.142 1.487 0.370 O2 DCZ 7 DCZ N4 N4 N 0 1 N N N 62.918 15.232 12.316 0.495 0.632 4.822 N4 DCZ 8 DCZ "C1'" C1* C 0 1 N N R 60.738 18.841 8.689 -0.489 -1.009 -0.381 "C1'" DCZ 9 DCZ "C2'" C2* C 0 1 N N N 59.292 18.529 8.349 -1.673 -0.205 -0.952 "C2'" DCZ 10 DCZ "C3'" C3* C 0 1 N N S 58.782 19.899 7.967 -1.082 0.514 -2.188 "C3'" DCZ 11 DCZ "C4'" C4* C 0 1 N N R 59.557 20.858 8.862 0.165 -0.350 -2.502 "C4'" DCZ 12 DCZ "O4'" O4* O 0 1 N N N 60.774 20.186 9.192 0.659 -0.720 -1.195 "O4'" DCZ 13 DCZ "O3'" O3* O 0 1 N N N 59.153 20.114 6.618 -2.004 0.494 -3.280 "O3'" DCZ 14 DCZ "C5'" C5* C 0 1 N N N 58.772 21.107 10.125 1.209 0.466 -3.266 "C5'" DCZ 15 DCZ "O5'" O5* O 0 1 N N N 57.622 21.779 10.066 2.346 -0.352 -3.542 "O5'" DCZ 16 DCZ H5 H5 H 0 1 N N N 61.312 17.253 12.956 -0.125 -1.850 4.089 H5 DCZ 17 DCZ H6 H6 H 0 1 N N N 60.329 18.873 11.267 -0.562 -2.551 1.784 H6 DCZ 18 DCZ HN41 1HN4 H 0 0 N N N 62.722 15.309 13.314 0.718 1.560 4.994 HN41 DCZ 19 DCZ HN42 2HN4 H 0 0 N N N 63.929 15.228 12.185 0.444 0.001 5.556 HN42 DCZ 20 DCZ "H1'" H1* H 0 1 N N N 61.372 18.737 7.777 -0.712 -2.075 -0.419 "H1'" DCZ 21 DCZ "H2'1" 1H2* H 0 0 N N N 59.141 17.731 7.584 -2.480 -0.875 -1.250 "H2'1" DCZ 22 DCZ "H2'2" 2H2* H 0 0 N N N 58.713 18.008 9.147 -2.030 0.520 -0.222 "H2'2" DCZ 23 DCZ "H3'" H3* H 0 1 N N N 57.679 20.023 8.079 -0.795 1.536 -1.943 "H3'" DCZ 24 DCZ "H4'" H4* H 0 1 N N N 59.742 21.835 8.358 -0.115 -1.238 -3.069 "H4'" DCZ 25 DCZ "HO3'" *HO3 H 0 0 N N N 58.832 20.975 6.377 -2.793 0.970 -2.987 "HO3'" DCZ 26 DCZ "H5'1" 1H5* H 0 0 N N N 58.585 20.128 10.625 0.779 0.819 -4.203 "H5'1" DCZ 27 DCZ "H5'2" 2H5* H 0 0 N N N 59.438 21.609 10.863 1.514 1.321 -2.662 "H5'2" DCZ 28 DCZ HO51 1HO5 H 0 0 N N N 57.127 21.935 10.861 2.978 0.199 -4.022 HO51 DCZ 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DCZ N1 C2 SING N N 1 DCZ N1 C6 SING N N 2 DCZ N1 "C1'" SING N N 3 DCZ C2 N3 SING N N 4 DCZ C2 O2 DOUB N N 5 DCZ N3 C4 DOUB N N 6 DCZ C4 C5 SING N N 7 DCZ C4 N4 SING N N 8 DCZ C5 C6 DOUB N N 9 DCZ C5 H5 SING N N 10 DCZ C6 H6 SING N N 11 DCZ N4 HN41 SING N N 12 DCZ N4 HN42 SING N N 13 DCZ "C1'" "C2'" SING N N 14 DCZ "C1'" "O4'" SING N N 15 DCZ "C1'" "H1'" SING N N 16 DCZ "C2'" "C3'" SING N N 17 DCZ "C2'" "H2'1" SING N N 18 DCZ "C2'" "H2'2" SING N N 19 DCZ "C3'" "C4'" SING N N 20 DCZ "C3'" "O3'" SING N N 21 DCZ "C3'" "H3'" SING N N 22 DCZ "C4'" "O4'" SING N N 23 DCZ "C4'" "C5'" SING N N 24 DCZ "C4'" "H4'" SING N N 25 DCZ "O3'" "HO3'" SING N N 26 DCZ "C5'" "O5'" SING N N 27 DCZ "C5'" "H5'1" SING N N 28 DCZ "C5'" "H5'2" SING N N 29 DCZ "O5'" HO51 SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DCZ SMILES ACDLabs 10.04 "O=C1N=C(N)C=CN1C2OC(C(O)C2)CO" DCZ SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CO)O2" DCZ SMILES CACTVS 3.341 "NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO)O2" DCZ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)CO)O" DCZ SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2C=CC(=NC2=O)N)CO)O" DCZ InChI InChI 1.03 "InChI=1S/C9H13N3O4/c10-7-1-2-12(9(15)11-7)8-3-5(14)6(4-13)16-8/h1-2,5-6,8,13-14H,3-4H2,(H2,10,11,15)/t5-,6+,8+/m0/s1" DCZ InChIKey InChI 1.03 CKTSBUTUHBMZGZ-SHYZEUOFSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DCZ "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxycytidine" DCZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "4-amino-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DCZ "Create component" 2001-05-30 RCSB DCZ "Modify descriptor" 2011-06-04 RCSB DCZ "Modify linking type" 2017-07-13 RCSB #