data_DD6
#
_chem_comp.id DD6
_chem_comp.name "(3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C40 H54 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Diadinoxanthin
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-10-17
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 582.855
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DD6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6A2W
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DD6 C C1 C 0 1 N N N -26.646 13.161 -2.545 2.482 2.360 1.447 C DD6 1
DD6 C1 C2 C 0 1 N N N -27.020 13.551 -1.145 2.559 1.316 0.363 C1 DD6 2
DD6 C10 C3 C 0 1 N N N -17.414 13.813 0.777 -6.978 1.846 -0.753 C10 DD6 3
DD6 C11 C4 C 0 1 N N N -16.248 14.084 1.404 -8.110 1.436 -1.384 C11 DD6 4
DD6 C12 C5 C 0 1 N N N -16.248 14.681 2.780 -8.032 0.392 -2.468 C12 DD6 5
DD6 C13 C6 C 0 1 N N N -14.957 13.854 0.701 -9.364 1.989 -1.021 C13 DD6 6
DD6 C14 C7 C 0 1 N N N -13.999 12.906 0.795 -10.287 1.224 -0.432 C14 DD6 7
DD6 C15 C8 C 0 1 N N S -13.793 11.655 1.655 -9.937 -0.173 0.012 C15 DD6 8
DD6 C16 C9 C 0 1 N N N -12.563 11.593 2.581 -10.926 -1.262 -0.398 C16 DD6 9
DD6 C17 C10 C 0 1 N N N -11.392 10.940 1.858 -11.319 -2.101 0.818 C17 DD6 10
DD6 C18 C11 C 0 1 N N S -11.674 9.464 1.631 -10.042 -2.636 1.476 C18 DD6 11
DD6 C19 C12 C 0 1 N N N -12.928 9.273 0.777 -9.357 -1.488 2.218 C19 DD6 12
DD6 C2 C13 C 0 1 N N N -26.064 13.786 -0.216 1.412 0.900 -0.276 C2 DD6 13
DD6 C20 C14 C 0 1 N N R -13.902 10.460 0.689 -9.107 -0.320 1.278 C20 DD6 14
DD6 C21 C15 C 0 1 N N N -14.641 10.658 -0.634 -8.685 0.980 1.965 C21 DD6 15
DD6 C22 C16 C 0 1 N N N -12.858 10.841 3.878 -10.278 -2.167 -1.447 C22 DD6 16
DD6 C23 C17 C 0 1 N N N -12.142 13.010 2.962 -12.178 -0.613 -0.991 C23 DD6 17
DD6 C24 C18 C 0 1 N N N -28.457 13.702 -0.817 3.797 0.769 0.006 C24 DD6 18
DD6 C25 C19 C 0 1 N N N -29.411 13.018 -1.459 4.944 1.185 0.644 C25 DD6 19
DD6 C26 C20 C 0 1 N N N -30.840 13.191 -1.149 6.184 0.637 0.286 C26 DD6 20
DD6 C27 C21 C 0 1 N N N -31.692 13.099 -2.189 7.321 1.050 0.919 C27 DD6 21
DD6 C28 C22 C 0 1 N N N -31.121 12.844 -3.552 7.243 2.094 2.003 C28 DD6 22
DD6 C29 C23 C 0 1 N N N -32.943 13.243 -2.161 8.587 0.490 0.553 C29 DD6 23
DD6 C3 C24 C 0 1 N N N -24.622 13.661 -0.491 0.174 1.447 0.082 C3 DD6 24
DD6 C30 C25 C 0 1 N N N -34.099 13.365 -2.391 9.625 0.032 0.253 C30 DD6 25
DD6 C31 C26 C 0 1 N N N -35.260 13.592 -2.837 10.892 -0.528 -0.113 C31 DD6 26
DD6 C32 C27 C 0 1 N N N -36.224 12.452 -3.084 12.115 -0.044 0.610 C32 DD6 27
DD6 C33 C28 C 0 1 N N N -36.524 12.542 -4.573 13.373 -0.415 -0.178 C33 DD6 28
DD6 C34 C29 C 0 1 N N R -37.218 13.864 -4.906 13.301 -1.903 -0.540 C34 DD6 29
DD6 C35 C30 C 0 1 N N N -36.446 15.092 -4.430 12.174 -2.103 -1.555 C35 DD6 30
DD6 C36 C31 C 0 1 N N N -35.585 14.841 -3.216 10.917 -1.445 -1.065 C36 DD6 31
DD6 C37 C32 C 0 1 N N N -35.065 16.043 -2.483 9.611 -1.846 -1.701 C37 DD6 32
DD6 C4 C33 C 0 1 N N N -23.688 13.799 0.469 -0.974 1.030 -0.557 C4 DD6 33
DD6 C40 C34 C 0 1 N N N -37.523 12.548 -2.289 12.177 -0.695 1.993 C40 DD6 34
DD6 C41 C35 C 0 1 N N N -35.542 11.138 -2.723 12.044 1.476 0.767 C41 DD6 35
DD6 C5 C36 C 0 1 N N N -22.251 13.668 0.170 -2.212 1.577 -0.199 C5 DD6 36
DD6 C6 C37 C 0 1 N N N -21.245 13.899 1.048 -3.358 1.161 -0.838 C6 DD6 37
DD6 C7 C38 C 0 1 N N N -21.551 14.324 2.453 -3.281 0.117 -1.922 C7 DD6 38
DD6 C8 C39 C 0 1 N N N -19.831 13.737 0.612 -4.598 1.709 -0.479 C8 DD6 39
DD6 C9 C40 C 0 1 N N N -18.751 14.022 1.359 -5.735 1.297 -1.113 C9 DD6 40
DD6 O1 O1 O 0 1 N N N -14.791 10.628 1.799 -8.550 -0.547 -0.010 O1 DD6 41
DD6 O2 O2 O 0 1 N N N -10.549 8.848 0.986 -10.376 -3.675 2.398 O2 DD6 42
DD6 O4 O3 O 0 1 N N N -37.352 13.977 -6.327 14.543 -2.318 -1.113 O4 DD6 43
DD6 H1 H1 H 0 1 N N N -25.551 13.091 -2.627 2.587 3.351 1.006 H1 DD6 44
DD6 H2 H2 H 0 1 N N N -27.095 12.186 -2.786 1.519 2.288 1.953 H2 DD6 45
DD6 H3 H3 H 0 1 N N N -27.018 13.920 -3.249 3.284 2.197 2.167 H3 DD6 46
DD6 H4 H4 H 0 1 N N N -17.362 13.414 -0.225 -7.034 2.594 0.024 H4 DD6 47
DD6 H5 H5 H 0 1 N N N -17.283 14.777 3.139 -8.059 -0.601 -2.019 H5 DD6 48
DD6 H6 H6 H 0 1 N N N -15.682 14.029 3.462 -8.879 0.507 -3.144 H6 DD6 49
DD6 H7 H7 H 0 1 N N N -15.778 15.675 2.748 -7.103 0.514 -3.024 H7 DD6 50
DD6 H8 H8 H 0 1 N N N -14.739 14.605 -0.044 -9.573 3.030 -1.222 H8 DD6 51
DD6 H9 H9 H 0 1 N N N -13.188 13.068 0.101 -11.285 1.606 -0.274 H9 DD6 52
DD6 H10 H10 H 0 1 N N N -10.483 11.047 2.468 -11.865 -1.481 1.530 H10 DD6 53
DD6 H11 H11 H 0 1 N N N -11.242 11.435 0.887 -11.946 -2.934 0.501 H11 DD6 54
DD6 H12 H12 H 0 1 N N N -11.845 8.988 2.608 -9.372 -3.028 0.711 H12 DD6 55
DD6 H13 H13 H 0 1 N N N -13.484 8.418 1.190 -9.994 -1.159 3.039 H13 DD6 56
DD6 H14 H14 H 0 1 N N N -12.600 9.037 -0.246 -8.405 -1.837 2.619 H14 DD6 57
DD6 H15 H15 H 0 1 N N N -26.374 14.080 0.776 1.467 0.152 -1.053 H15 DD6 58
DD6 H16 H16 H 0 1 N N N -15.300 11.536 -0.559 -8.073 0.748 2.837 H16 DD6 59
DD6 H17 H17 H 0 1 N N N -13.911 10.815 -1.442 -8.109 1.589 1.268 H17 DD6 60
DD6 H18 H18 H 0 1 N N N -15.244 9.765 -0.854 -9.573 1.529 2.280 H18 DD6 61
DD6 H19 H19 H 0 1 N N N -11.955 10.822 4.505 -9.398 -2.647 -1.020 H19 DD6 62
DD6 H20 H20 H 0 1 N N N -13.670 11.349 4.420 -10.992 -2.930 -1.760 H20 DD6 63
DD6 H21 H21 H 0 1 N N N -13.163 9.810 3.643 -9.983 -1.570 -2.310 H21 DD6 64
DD6 H22 H22 H 0 1 N N N -11.264 12.967 3.623 -11.901 -0.024 -1.866 H22 DD6 65
DD6 H23 H23 H 0 1 N N N -11.889 13.574 2.052 -12.885 -1.388 -1.284 H23 DD6 66
DD6 H24 H24 H 0 1 N N N -12.970 13.510 3.485 -12.638 0.037 -0.247 H24 DD6 67
DD6 H25 H25 H 0 1 N N N -28.744 14.387 -0.033 3.853 0.021 -0.771 H25 DD6 68
DD6 H26 H26 H 0 1 N N N -29.124 12.317 -2.229 4.889 1.933 1.421 H26 DD6 69
DD6 H27 H27 H 0 1 N N N -31.186 13.381 -0.144 6.240 -0.111 -0.491 H27 DD6 70
DD6 H28 H28 H 0 1 N N N -30.029 12.732 -3.478 7.348 3.085 1.561 H28 DD6 71
DD6 H29 H29 H 0 1 N N N -31.557 11.922 -3.965 6.280 2.021 2.509 H29 DD6 72
DD6 H30 H30 H 0 1 N N N -31.359 13.690 -4.213 8.045 1.930 2.723 H30 DD6 73
DD6 H31 H31 H 0 1 N N N -24.302 13.451 -1.501 0.119 2.195 0.859 H31 DD6 74
DD6 H33 H33 H 0 1 N N N -37.180 11.707 -4.860 13.423 0.182 -1.089 H33 DD6 75
DD6 H34 H34 H 0 1 N N N -35.581 12.477 -5.136 14.256 -0.226 0.432 H34 DD6 76
DD6 H35 H35 H 0 1 N N N -38.211 13.868 -4.434 13.094 -2.488 0.356 H35 DD6 77
DD6 H36 H36 H 0 1 N N N -35.797 15.432 -5.250 12.466 -1.665 -2.510 H36 DD6 78
DD6 H37 H37 H 0 1 N N N -37.170 15.882 -4.183 11.993 -3.169 -1.689 H37 DD6 79
DD6 H39 H39 H 0 1 N N N -34.457 15.716 -1.626 9.795 -2.600 -2.466 H39 DD6 80
DD6 H40 H40 H 0 1 N N N -34.446 16.647 -3.162 8.947 -2.257 -0.939 H40 DD6 81
DD6 H41 H41 H 0 1 N N N -35.911 16.647 -2.123 9.144 -0.973 -2.156 H41 DD6 82
DD6 H42 H42 H 0 1 N N N -23.999 14.011 1.481 -0.918 0.282 -1.334 H42 DD6 83
DD6 H43 H43 H 0 1 N N N -37.301 12.482 -1.214 12.223 -1.778 1.884 H43 DD6 84
DD6 H44 H44 H 0 1 N N N -38.014 13.508 -2.504 13.065 -0.345 2.520 H44 DD6 85
DD6 H45 H45 H 0 1 N N N -38.191 11.722 -2.576 11.287 -0.424 2.562 H45 DD6 86
DD6 H46 H46 H 0 1 N N N -35.343 11.113 -1.641 11.154 1.741 1.338 H46 DD6 87
DD6 H47 H47 H 0 1 N N N -36.198 10.298 -2.995 12.932 1.829 1.292 H47 DD6 88
DD6 H48 H48 H 0 1 N N N -34.593 11.055 -3.272 11.995 1.941 -0.218 H48 DD6 89
DD6 H49 H49 H 0 1 N N N -21.978 13.363 -0.829 -2.267 2.326 0.578 H49 DD6 90
DD6 H50 H50 H 0 1 N N N -20.611 14.461 3.008 -3.386 -0.873 -1.480 H50 DD6 91
DD6 H51 H51 H 0 1 N N N -22.108 15.272 2.436 -4.083 0.281 -2.642 H51 DD6 92
DD6 H52 H52 H 0 1 N N N -22.158 13.550 2.946 -2.318 0.190 -2.428 H52 DD6 93
DD6 H53 H53 H 0 1 N N N -19.659 13.360 -0.385 -4.654 2.457 0.297 H53 DD6 94
DD6 H54 H54 H 0 1 N N N -18.861 14.397 2.366 -5.679 0.549 -1.890 H54 DD6 95
DD6 H55 H55 H 0 1 N N N -9.772 8.969 1.519 -9.614 -4.060 2.852 H55 DD6 96
DD6 H56 H56 H 0 1 N N N -37.783 14.796 -6.541 14.567 -3.251 -1.366 H56 DD6 97
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DD6 O4 C34 SING N N 1
DD6 C34 C33 SING N N 2
DD6 C34 C35 SING N N 3
DD6 C33 C32 SING N N 4
DD6 C35 C36 SING N N 5
DD6 C28 C27 SING N N 6
DD6 C36 C31 DOUB N N 7
DD6 C36 C37 SING N N 8
DD6 C32 C31 SING N N 9
DD6 C32 C41 SING N N 10
DD6 C32 C40 SING N N 11
DD6 C31 C30 SING N N 12
DD6 C C1 SING N N 13
DD6 C30 C29 TRIP N N 14
DD6 C27 C29 SING N N 15
DD6 C27 C26 DOUB N E 16
DD6 C25 C26 SING N N 17
DD6 C25 C24 DOUB N E 18
DD6 C1 C24 SING N N 19
DD6 C1 C2 DOUB N E 20
DD6 C21 C20 SING N N 21
DD6 C3 C2 SING N N 22
DD6 C3 C4 DOUB N E 23
DD6 C5 C4 SING N N 24
DD6 C5 C6 DOUB N E 25
DD6 C8 C6 SING N N 26
DD6 C8 C9 DOUB N E 27
DD6 C20 C19 SING N N 28
DD6 C20 C15 SING N N 29
DD6 C20 O1 SING N N 30
DD6 C13 C14 DOUB N Z 31
DD6 C13 C11 SING N N 32
DD6 C10 C9 SING N N 33
DD6 C10 C11 DOUB N E 34
DD6 C19 C18 SING N N 35
DD6 C14 C15 SING N N 36
DD6 O2 C18 SING N N 37
DD6 C6 C7 SING N N 38
DD6 C11 C12 SING N N 39
DD6 C18 C17 SING N N 40
DD6 C15 O1 SING N N 41
DD6 C15 C16 SING N N 42
DD6 C17 C16 SING N N 43
DD6 C16 C23 SING N N 44
DD6 C16 C22 SING N N 45
DD6 C H1 SING N N 46
DD6 C H2 SING N N 47
DD6 C H3 SING N N 48
DD6 C10 H4 SING N N 49
DD6 C12 H5 SING N N 50
DD6 C12 H6 SING N N 51
DD6 C12 H7 SING N N 52
DD6 C13 H8 SING N N 53
DD6 C14 H9 SING N N 54
DD6 C17 H10 SING N N 55
DD6 C17 H11 SING N N 56
DD6 C18 H12 SING N N 57
DD6 C19 H13 SING N N 58
DD6 C19 H14 SING N N 59
DD6 C2 H15 SING N N 60
DD6 C21 H16 SING N N 61
DD6 C21 H17 SING N N 62
DD6 C21 H18 SING N N 63
DD6 C22 H19 SING N N 64
DD6 C22 H20 SING N N 65
DD6 C22 H21 SING N N 66
DD6 C23 H22 SING N N 67
DD6 C23 H23 SING N N 68
DD6 C23 H24 SING N N 69
DD6 C24 H25 SING N N 70
DD6 C25 H26 SING N N 71
DD6 C26 H27 SING N N 72
DD6 C28 H28 SING N N 73
DD6 C28 H29 SING N N 74
DD6 C28 H30 SING N N 75
DD6 C3 H31 SING N N 76
DD6 C33 H33 SING N N 77
DD6 C33 H34 SING N N 78
DD6 C34 H35 SING N N 79
DD6 C35 H36 SING N N 80
DD6 C35 H37 SING N N 81
DD6 C37 H39 SING N N 82
DD6 C37 H40 SING N N 83
DD6 C37 H41 SING N N 84
DD6 C4 H42 SING N N 85
DD6 C40 H43 SING N N 86
DD6 C40 H44 SING N N 87
DD6 C40 H45 SING N N 88
DD6 C41 H46 SING N N 89
DD6 C41 H47 SING N N 90
DD6 C41 H48 SING N N 91
DD6 C5 H49 SING N N 92
DD6 C7 H50 SING N N 93
DD6 C7 H51 SING N N 94
DD6 C7 H52 SING N N 95
DD6 C8 H53 SING N N 96
DD6 C9 H54 SING N N 97
DD6 O2 H55 SING N N 98
DD6 O4 H56 SING N N 99
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DD6 SMILES ACDLabs 12.01 "CC([C@H]=C[C@H]=C(C#CC=1C(C)(C)CC(CC=1C)O)C)=[C@H]C=[C@H]\C=C(/C)\C=C\C=C(/C)\C=C/C32OC2(CC(CC3(C)C)O)C"
DD6 InChI InChI 1.03 "InChI=1S/C40H54O3/c1-29(17-13-19-31(3)21-22-36-33(5)25-34(41)26-37(36,6)7)15-11-12-16-30(2)18-14-20-32(4)23-24-40-38(8,9)27-35(42)28-39(40,10)43-40/h11-20,23-24,34-35,41-42H,25-28H2,1-10H3/b12-11+,17-13+,18-14+,24-23-,29-15+,30-16+,31-19+,32-20+/t34-,35+,39-,40+/m1/s1"
DD6 InChIKey InChI 1.03 OGHZCSINIMWCSB-WMTIXGNLSA-N
DD6 SMILES_CANONICAL CACTVS 3.385 "CC1=C(C#CC(\C)=C\C=C\C(C)=C\C=C\C=C(C)\C=C\C=C(C)\C=C/[C@@]23O[C@]2(C)C[C@@H](O)CC3(C)C)C(C)(C)C[C@H](O)C1"
DD6 SMILES CACTVS 3.385 "CC1=C(C#CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=C[C]23O[C]2(C)C[CH](O)CC3(C)C)C(C)(C)C[CH](O)C1"
DD6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC1=C(C(C[C@@H](C1)O)(C)C)C#C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C\[C@]23[C@](O2)(C[C@H](CC3(C)C)O)C)/C)/C"
DD6 SMILES "OpenEye OEToolkits" 2.0.6 "CC1=C(C(CC(C1)O)(C)C)C#CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC23C(CC(CC2(O3)C)O)(C)C)C)C"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DD6 "SYSTEMATIC NAME" ACDLabs 12.01 "(3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol"
DD6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(1~{R},3~{S},6~{S})-1,5,5-trimethyl-6-[(1~{Z},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]-7-oxabicyclo[4.1.0]heptan-3-ol"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DD6 "Create component" 2018-10-17 PDBJ
DD6 "Initial release" 2019-02-06 RCSB
DD6 "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id DD6
_pdbx_chem_comp_synonyms.name Diadinoxanthin
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##