data_DDA # _chem_comp.id DDA _chem_comp.name beta-D-Olivopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;beta-D-Olivose; 2,6-dideoxy-beta-D-arabino-hexopyranose; 2,6-dideoxy-beta-D-glucopyranose; 2,6-dideoxy-beta-D-mannopyranose; 2-deoxy-beta-D-quinovopyranose; 2-deoxy-beta-D-rhamnoopyranose; D-Olivose; Olivose; 2,6-DIDEOXY-BETA-D-GLUCOSE; 2,6-DIDEOXY-BETA-D-MANNOSE ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 148.157 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DDA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EKH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 DDA beta-D-Olivose PDB ? 2 DDA "2,6-dideoxy-beta-D-arabino-hexopyranose" PDB ? 3 DDA "2,6-dideoxy-beta-D-glucopyranose" PDB ? 4 DDA "2,6-dideoxy-beta-D-mannopyranose" PDB ? 5 DDA 2-deoxy-beta-D-quinovopyranose PDB ? 6 DDA 2-deoxy-beta-D-rhamnoopyranose PDB ? 7 DDA D-Olivose PDB ? 8 DDA Olivose PDB ? 9 DDA "2,6-DIDEOXY-BETA-D-GLUCOSE" PDB ? 10 DDA "2,6-DIDEOXY-BETA-D-MANNOSE" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DDA C1 C1 C 0 1 N N R -6.293 -1.061 1.339 -1.670 -0.150 0.354 C1 DDA 1 DDA C2 C2 C 0 1 N N N -7.109 -1.494 0.141 -0.862 -1.345 -0.162 C2 DDA 2 DDA C3 C3 C 0 1 N N R -8.191 -0.491 -0.234 0.596 -1.196 0.284 C3 DDA 3 DDA C4 C4 C 0 1 N N S -8.933 0.021 0.999 1.142 0.140 -0.229 C4 DDA 4 DDA C5 C5 C 0 1 N N R -7.921 0.441 2.035 0.257 1.277 0.289 C5 DDA 5 DDA C6 C6 C 0 1 N N N -8.521 0.972 3.289 0.760 2.609 -0.269 C6 DDA 6 DDA O5 O5 O 0 1 N N N -7.219 -0.743 2.382 -1.090 1.061 -0.135 O5 DDA 7 DDA O1 O1 O 0 1 N Y N -5.597 -2.222 1.779 -3.019 -0.253 -0.106 O1 DDA 8 DDA O3 O3 O 0 1 N N N -9.204 -1.207 -0.985 1.372 -2.269 -0.254 O3 DDA 9 DDA O4 O4 O 0 1 N N N -9.828 1.095 0.699 2.478 0.322 0.242 O4 DDA 10 DDA H1 H1 H 0 1 N N N -5.622 -0.225 1.092 -1.656 -0.146 1.444 H1 DDA 11 DDA H21 H21 H 0 1 N N N -6.433 -1.618 -0.718 -1.276 -2.267 0.246 H21 DDA 12 DDA H22 H22 H 0 1 N N N -7.588 -2.457 0.372 -0.909 -1.373 -1.250 H22 DDA 13 DDA H3 H3 H 0 1 N N N -7.767 0.345 -0.809 0.648 -1.217 1.373 H3 DDA 14 DDA H4 H4 H 0 1 N N N -9.511 -0.819 1.413 1.135 0.141 -1.319 H4 DDA 15 DDA H5 H5 H 0 1 N N N -7.239 1.188 1.602 0.296 1.300 1.378 H5 DDA 16 DDA H61 H61 H 0 1 N N N -7.720 1.254 3.988 0.721 2.586 -1.357 H61 DDA 17 DDA H62 H62 H 0 1 N N N -9.133 1.856 3.057 0.130 3.419 0.101 H62 DDA 18 DDA H63 H63 H 0 1 N N N -9.154 0.198 3.749 1.788 2.773 0.054 H63 DDA 19 DDA HO1 HO1 H 0 1 N Y N -5.065 -2.005 2.535 -3.589 0.472 0.184 HO1 DDA 20 DDA HO3 HO3 H 0 1 N Y N -9.897 -0.607 -1.235 1.077 -3.146 0.025 HO3 DDA 21 DDA HO4 HO4 H 0 1 N Y N -10.263 1.377 1.495 3.094 -0.366 -0.045 HO4 DDA 22 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DDA C1 C2 SING N N 1 DDA C1 O5 SING N N 2 DDA C1 O1 SING N N 3 DDA C1 H1 SING N N 4 DDA C2 C3 SING N N 5 DDA C2 H21 SING N N 6 DDA C2 H22 SING N N 7 DDA C3 C4 SING N N 8 DDA C3 O3 SING N N 9 DDA C3 H3 SING N N 10 DDA C4 C5 SING N N 11 DDA C4 O4 SING N N 12 DDA C4 H4 SING N N 13 DDA C5 C6 SING N N 14 DDA C5 O5 SING N N 15 DDA C5 H5 SING N N 16 DDA C6 H61 SING N N 17 DDA C6 H62 SING N N 18 DDA C6 H63 SING N N 19 DDA O1 HO1 SING N N 20 DDA O3 HO3 SING N N 21 DDA O4 HO4 SING N N 22 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DDA SMILES ACDLabs 12.01 "OC1C(OC(O)CC1O)C" DDA InChI InChI 1.03 "InChI=1S/C6H12O4/c1-3-6(9)4(7)2-5(8)10-3/h3-9H,2H2,1H3/t3-,4-,5-,6-/m1/s1" DDA InChIKey InChI 1.03 FDWRIIDFYSUTDP-KVTDHHQDSA-N DDA SMILES_CANONICAL CACTVS 3.385 "C[C@H]1O[C@@H](O)C[C@@H](O)[C@@H]1O" DDA SMILES CACTVS 3.385 "C[CH]1O[CH](O)C[CH](O)[CH]1O" DDA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1[C@H]([C@@H](C[C@@H](O1)O)O)O" DDA SMILES "OpenEye OEToolkits" 1.7.6 "CC1C(C(CC(O1)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DDA "SYSTEMATIC NAME" ACDLabs 12.01 "2,6-dideoxy-beta-D-arabino-hexopyranose" DDA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,4R,5S,6R)-6-methyloxane-2,4,5-triol" DDA "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DOlib DDA "COMMON NAME" GMML 1.0 b-D-Olivopyranose DDA "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 "b-D-2,6-deoxy-Glcp" DDA "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Oli # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support DDA "CARBOHYDRATE ISOMER" D PDB ? DDA "CARBOHYDRATE RING" pyranose PDB ? DDA "CARBOHYDRATE ANOMER" beta PDB ? DDA "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DDA "Create component" 1999-07-08 RCSB DDA "Modify descriptor" 2011-06-04 RCSB DDA "Modify leaving atom flag" 2013-07-26 RCSB DDA "Other modification" 2019-08-12 RCSB DDA "Other modification" 2019-12-19 RCSB DDA "Other modification" 2020-07-03 RCSB DDA "Modify name" 2020-07-17 RCSB DDA "Modify synonyms" 2020-07-17 RCSB ##