data_DDO # _chem_comp.id DDO _chem_comp.name 6-HYDROXY-D-NORLEUCINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H13 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-09-11 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 147.172 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DDO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1JSL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DDO N N N 0 1 N N N N N N 46.766 7.171 14.340 1.770 0.233 -1.353 N DDO 1 DDO CA CA C 0 1 N N R N N N 46.807 6.398 15.569 0.325 0.498 -1.375 CA DDO 2 DDO CB CB C 0 1 N N N N N N 47.314 7.247 16.733 -0.334 -0.171 -0.169 CB DDO 3 DDO CG CG C 0 1 N N N N N N 46.494 8.488 17.008 0.266 0.392 1.119 CG DDO 4 DDO CD CD C 0 1 N N N N N N 46.708 8.971 18.433 -0.394 -0.278 2.326 CD DDO 5 DDO CE CE C 0 1 N N N N N N 45.916 8.139 19.445 0.207 0.285 3.615 CE DDO 6 DDO OZ OZ O 0 1 N N N N N N 46.247 6.762 19.380 -0.409 -0.340 4.741 OZ DDO 7 DDO C C C 0 1 N N N N N N 47.673 5.157 15.432 -0.266 -0.056 -2.645 C DDO 8 DDO O O O 0 1 N N N N N N 47.067 4.077 15.374 0.227 -1.026 -3.169 O DDO 9 DDO OXT OXT O 0 1 N N N N N N 48.919 5.265 15.392 -1.343 0.527 -3.194 OXT DDO 10 DDO HN1 1HN H 0 1 N N N N N N 46.427 6.604 13.562 1.882 -0.768 -1.393 HN1 DDO 11 DDO HN2 2HN H 0 1 N N N N N N 47.670 7.593 14.131 2.146 0.602 -2.213 HN2 DDO 12 DDO HA1 1HA H 0 1 N N N N N N 45.761 6.073 15.777 0.152 1.574 -1.334 HA1 DDO 13 DDO HB1 1HB H 0 1 N N N N N N 47.402 6.627 17.655 -1.406 0.025 -0.186 HB1 DDO 14 DDO HB2 2HB H 0 1 N N N N N N 48.385 7.515 16.579 -0.162 -1.246 -0.211 HB2 DDO 15 DDO HG1 1HG H 0 1 N N N N N N 46.700 9.292 16.264 1.338 0.195 1.136 HG1 DDO 16 DDO HG2 2HG H 0 1 N N N N N N 45.413 8.326 16.784 0.093 1.467 1.161 HG2 DDO 17 DDO HD1 1HD H 0 1 N N N N N N 47.792 8.999 18.692 -1.466 -0.081 2.309 HD1 DDO 18 DDO HD2 2HD H 0 1 N N N N N N 46.475 10.057 18.531 -0.221 -1.353 2.284 HD2 DDO 19 DDO HE1 1HE H 0 1 N N N N N N 46.040 8.535 20.479 1.279 0.088 3.632 HE1 DDO 20 DDO HE2 2HE H 0 1 N N N N N N 44.818 8.296 19.326 0.034 1.360 3.657 HE2 DDO 21 DDO HOZ HOZ H 0 1 N N N N N N 45.755 6.245 20.008 -0.003 0.042 5.531 HOZ DDO 22 DDO HXT HXT H 0 1 N N N N N N 49.460 4.489 15.306 -1.723 0.171 -4.009 HXT DDO 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DDO N CA SING N N 1 DDO N HN1 SING N N 2 DDO N HN2 SING N N 3 DDO CA CB SING N N 4 DDO CA C SING N N 5 DDO CA HA1 SING N N 6 DDO CB CG SING N N 7 DDO CB HB1 SING N N 8 DDO CB HB2 SING N N 9 DDO CG CD SING N N 10 DDO CG HG1 SING N N 11 DDO CG HG2 SING N N 12 DDO CD CE SING N N 13 DDO CD HD1 SING N N 14 DDO CD HD2 SING N N 15 DDO CE OZ SING N N 16 DDO CE HE1 SING N N 17 DDO CE HE2 SING N N 18 DDO OZ HOZ SING N N 19 DDO C O DOUB N N 20 DDO C OXT SING N N 21 DDO OXT HXT SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DDO SMILES ACDLabs 10.04 "O=C(O)C(N)CCCCO" DDO SMILES_CANONICAL CACTVS 3.341 "N[C@H](CCCCO)C(O)=O" DDO SMILES CACTVS 3.341 "N[CH](CCCCO)C(O)=O" DDO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(CCO)C[C@H](C(=O)O)N" DDO SMILES "OpenEye OEToolkits" 1.5.0 "C(CCO)CC(C(=O)O)N" DDO InChI InChI 1.03 "InChI=1S/C6H13NO3/c7-5(6(9)10)3-1-2-4-8/h5,8H,1-4,7H2,(H,9,10)/t5-/m1/s1" DDO InChIKey InChI 1.03 OLUWXTFAPJJWPL-RXMQYKEDSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DDO "SYSTEMATIC NAME" ACDLabs 10.04 6-hydroxy-D-norleucine DDO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-2-amino-6-hydroxy-hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DDO "Create component" 2001-09-11 RCSB DDO "Modify descriptor" 2011-06-04 RCSB DDO "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 DDO THR None "Covalent chemical modification" "Amino-acid side chain" "Any position" CD OG1 ? ? 2 DDO TYR None "Covalent chemical modification" "Amino-acid side chain" "Any position" CD OH ? ? #