data_DDU # _chem_comp.id DDU _chem_comp.name "2'-5'DIDEOXYURIDINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H12 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 212.203 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DDU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1DDU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DDU N1 N1 N 0 1 N N N 44.633 34.307 24.578 -0.463 -0.212 0.704 N1 DDU 1 DDU C2 C2 C 0 1 N N N 43.815 35.120 25.362 0.674 0.355 1.145 C2 DDU 2 DDU N3 N3 N 0 1 N N N 42.738 35.726 24.732 0.917 0.481 2.463 N3 DDU 3 DDU C4 C4 C 0 1 N N N 42.425 35.597 23.384 0.024 0.028 3.366 C4 DDU 4 DDU C5 C5 C 0 1 N N N 43.340 34.724 22.649 -1.173 -0.575 2.915 C5 DDU 5 DDU C6 C6 C 0 1 N N N 44.427 34.113 23.295 -1.395 -0.684 1.587 C6 DDU 6 DDU O2 O2 O 0 1 N N N 43.983 35.300 26.553 1.488 0.767 0.343 O2 DDU 7 DDU O4 O4 O 0 1 N N N 41.457 36.186 22.895 0.246 0.137 4.558 O4 DDU 8 DDU "C1'" C1* C 0 1 N N R 45.825 33.656 25.194 -0.703 -0.330 -0.736 "C1'" DDU 9 DDU "C2'" C2* C 0 1 N N N 45.491 32.434 26.054 -0.613 1.055 -1.423 "C2'" DDU 10 DDU "C3'" C3* C 0 1 N N S 46.840 31.764 26.278 -0.255 0.671 -2.883 "C3'" DDU 11 DDU "C4'" C4* C 0 1 N N R 47.407 31.848 24.838 0.338 -0.745 -2.762 "C4'" DDU 12 DDU "O3'" O3* O 0 1 N N N 47.664 32.570 27.126 -1.428 0.661 -3.700 "O3'" DDU 13 DDU "O4'" O4* O 0 1 N N N 47.005 33.204 24.355 0.351 -1.088 -1.366 "O4'" DDU 14 DDU "C5'" C5* C 0 1 N N N 46.787 30.800 23.911 1.764 -0.760 -3.315 "C5'" DDU 15 DDU HN3 HN3 H 0 1 N N N 42.129 36.311 25.304 1.741 0.895 2.764 HN3 DDU 16 DDU H5 H5 H 0 1 N N N 43.206 34.519 21.573 -1.901 -0.943 3.623 H5 DDU 17 DDU H6 H6 H 0 1 N N N 45.145 33.456 22.775 -2.304 -1.141 1.225 H6 DDU 18 DDU "H1'" H1* H 0 1 N N N 46.154 34.564 25.750 -1.672 -0.791 -0.925 "H1'" DDU 19 DDU "H2'1" 1H2* H 0 0 N N N 44.934 32.670 26.990 -1.572 1.572 -1.383 "H2'1" DDU 20 DDU "H2'2" 2H2* H 0 0 N N N 44.712 31.764 25.618 0.173 1.661 -0.975 "H2'2" DDU 21 DDU "H3'" H3* H 0 1 N N N 46.786 30.751 26.741 0.484 1.361 -3.289 "H3'" DDU 22 DDU "H4'" H4* H 0 1 N N N 48.507 31.669 24.837 -0.280 -1.454 -3.312 "H4'" DDU 23 DDU "HO3'" *HO3 H 0 0 N N N 48.505 32.152 27.265 -1.785 1.559 -3.687 "HO3'" DDU 24 DDU "H5'1" 1H5* H 0 0 N N N 47.194 30.860 22.875 2.180 -1.764 -3.221 "H5'1" DDU 25 DDU "H5'2" 2H5* H 0 0 N N N 46.900 29.773 24.330 1.749 -0.470 -4.366 "H5'2" DDU 26 DDU "H5'3" 3H5* H 0 0 N N N 45.674 30.869 23.911 2.380 -0.058 -2.753 "H5'3" DDU 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DDU N1 C2 SING N N 1 DDU N1 C6 SING N N 2 DDU N1 "C1'" SING N N 3 DDU C2 N3 SING N N 4 DDU C2 O2 DOUB N N 5 DDU N3 C4 SING N N 6 DDU N3 HN3 SING N N 7 DDU C4 C5 SING N N 8 DDU C4 O4 DOUB N N 9 DDU C5 C6 DOUB N N 10 DDU C5 H5 SING N N 11 DDU C6 H6 SING N N 12 DDU "C1'" "C2'" SING N N 13 DDU "C1'" "O4'" SING N N 14 DDU "C1'" "H1'" SING N N 15 DDU "C2'" "C3'" SING N N 16 DDU "C2'" "H2'1" SING N N 17 DDU "C2'" "H2'2" SING N N 18 DDU "C3'" "C4'" SING N N 19 DDU "C3'" "O3'" SING N N 20 DDU "C3'" "H3'" SING N N 21 DDU "C4'" "O4'" SING N N 22 DDU "C4'" "C5'" SING N N 23 DDU "C4'" "H4'" SING N N 24 DDU "O3'" "HO3'" SING N N 25 DDU "C5'" "H5'1" SING N N 26 DDU "C5'" "H5'2" SING N N 27 DDU "C5'" "H5'3" SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DDU SMILES ACDLabs 10.04 "O=C1NC(=O)N(C=C1)C2OC(C(O)C2)C" DDU SMILES_CANONICAL CACTVS 3.341 "C[C@H]1O[C@H](C[C@@H]1O)N2C=CC(=O)NC2=O" DDU SMILES CACTVS 3.341 "C[CH]1O[CH](C[CH]1O)N2C=CC(=O)NC2=O" DDU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H]1[C@H](C[C@@H](O1)N2C=CC(=O)NC2=O)O" DDU SMILES "OpenEye OEToolkits" 1.5.0 "CC1C(CC(O1)N2C=CC(=O)NC2=O)O" DDU InChI InChI 1.03 "InChI=1S/C9H12N2O4/c1-5-6(12)4-8(15-5)11-3-2-7(13)10-9(11)14/h2-3,5-6,8,12H,4H2,1H3,(H,10,13,14)/t5-,6+,8-/m1/s1" DDU InChIKey InChI 1.03 FDCFKLBIAIKUKB-GKROBHDKSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DDU "SYSTEMATIC NAME" ACDLabs 10.04 "2',5'-dideoxyuridine" DDU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[(2R,4S,5R)-4-hydroxy-5-methyl-oxolan-2-yl]pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DDU "Create component" 1999-07-08 RCSB DDU "Modify descriptor" 2011-06-04 RCSB #