data_DDX # _chem_comp.id DDX _chem_comp.name "2',3'-DEHYDRO-2',3'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C5 H9 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-08-22 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 196.095 _chem_comp.one_letter_code N _chem_comp.three_letter_code DDX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DDX P P P 0 1 N N N 26.784 23.700 37.283 2.169 -2.756 -4.556 P DDX 1 DDX OP1 O1P O 0 1 N N N 27.552 24.573 36.362 1.376 -2.050 -5.617 OP1 DDX 2 DDX OP2 O2P O 0 1 N N N 27.330 22.370 37.653 1.711 -4.275 -4.246 OP2 DDX 3 DDX OP3 O3P O 0 1 N Y N ? ? ? 3.750 -2.900 -4.867 OP3 DDX 4 DDX "O5'" O5* O 0 1 N N N 25.309 23.495 36.706 2.151 -2.044 -3.102 "O5'" DDX 5 DDX "C5'" C5* C 0 1 N N N 24.730 24.508 35.959 2.876 -2.649 -2.044 "C5'" DDX 6 DDX "C4'" C4* C 0 1 N N S 23.186 24.474 36.096 2.710 -1.806 -0.791 "C4'" DDX 7 DDX "O4'" O4* O 0 1 N N N 22.621 23.906 34.918 3.163 -0.465 -1.072 "O4'" DDX 8 DDX "C1'" C1* C 0 1 N N S 21.916 22.706 35.247 2.131 0.458 -0.676 "C1'" DDX 9 DDX "C3'" C3* C 0 1 N N N 22.662 23.631 37.228 1.292 -1.668 -0.368 "C3'" DDX 10 DDX "C2'" C2* C 0 1 N N N 21.934 22.624 36.743 0.966 -0.380 -0.297 "C2'" DDX 11 DDX "O1'" O1* O 0 1 N N N 20.755 22.784 34.483 2.555 1.283 0.400 "O1'" DDX 12 DDX HOP2 2HOP H 0 0 N N N 26.838 21.810 38.242 1.580 -4.894 -4.996 HOP2 DDX 13 DDX HOP3 3HOP H 0 0 N N N -0.491 -0.559 0.589 4.032 -3.227 -5.747 HOP3 DDX 14 DDX "H5'" 1H5* H 0 1 N N N 25.146 25.507 36.224 2.489 -3.656 -1.877 "H5'" DDX 15 DDX "H5''" 2H5* H 0 0 N N N 25.051 24.470 34.892 3.931 -2.708 -2.324 "H5''" DDX 16 DDX "H4'" H4* H 0 1 N N N 22.901 25.536 36.281 3.319 -2.210 0.024 "H4'" DDX 17 DDX "H1'" H1* H 0 1 N N N 22.311 21.697 34.983 1.901 1.098 -1.533 "H1'" DDX 18 DDX "H3'" H3* H 0 1 N N N 22.799 23.741 38.316 0.631 -2.488 -0.131 "H3'" DDX 19 DDX "H2'" H2* H 0 1 N N N 21.458 21.894 37.420 0.000 0.001 -0.001 "H2'" DDX 20 DDX "HO1'" HO1* H 0 0 N N N 20.286 21.986 34.701 3.041 2.027 0.009 "HO1'" DDX 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DDX P OP1 DOUB N N 1 DDX P OP2 SING N N 2 DDX P OP3 SING N N 3 DDX P "O5'" SING N N 4 DDX OP2 HOP2 SING N N 5 DDX OP3 HOP3 SING N N 6 DDX "O5'" "C5'" SING N N 7 DDX "C5'" "C4'" SING N N 8 DDX "C5'" "H5'" SING N N 9 DDX "C5'" "H5''" SING N N 10 DDX "C4'" "O4'" SING N N 11 DDX "C4'" "C3'" SING N N 12 DDX "C4'" "H4'" SING N N 13 DDX "O4'" "C1'" SING N N 14 DDX "C1'" "C2'" SING N N 15 DDX "C1'" "O1'" SING N N 16 DDX "C1'" "H1'" SING N N 17 DDX "C3'" "C2'" DOUB N N 18 DDX "C3'" "H3'" SING N N 19 DDX "C2'" "H2'" SING N N 20 DDX "O1'" "HO1'" SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DDX SMILES ACDLabs 10.04 "O=P(OCC1OC(O)C=C1)(O)O" DDX SMILES_CANONICAL CACTVS 3.341 "O[C@H]1O[C@H](CO[P](O)(O)=O)C=C1" DDX SMILES CACTVS 3.341 "O[CH]1O[CH](CO[P](O)(O)=O)C=C1" DDX SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=C[C@H](O[C@@H]1COP(=O)(O)O)O" DDX SMILES "OpenEye OEToolkits" 1.5.0 "C1=CC(OC1COP(=O)(O)O)O" DDX InChI InChI 1.03 "InChI=1S/C5H9O6P/c6-5-2-1-4(11-5)3-10-12(7,8)9/h1-2,4-6H,3H2,(H2,7,8,9)/t4-,5-/m0/s1" DDX InChIKey InChI 1.03 BSKKIMXBXBXIKI-WHFBIAKZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DDX "SYSTEMATIC NAME" ACDLabs 10.04 "[(2S,5S)-5-hydroxy-2,5-dihydrofuran-2-yl]methyl dihydrogen phosphate" DDX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,5S)-5-hydroxy-2,5-dihydrofuran-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DDX "Create component" 2002-08-22 RCSB DDX "Modify descriptor" 2011-06-04 RCSB #