data_DEG # _chem_comp.id DEG _chem_comp.name "butyl alpha-D-mannopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C10 H20 O6" _chem_comp.mon_nstd_parent_comp_id MAN _chem_comp.pdbx_synonyms "BUTYL-A-D-MANNOSE; butyl alpha-D-mannoside; butyl D-mannoside; butyl mannoside" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-02-05 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 236.262 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DEG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1UWF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 DEG BUTYL-A-D-MANNOSE PDB ? 2 DEG "butyl alpha-D-mannoside" PDB ? 3 DEG "butyl D-mannoside" PDB ? 4 DEG "butyl mannoside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DEG "C3'" "C3'" C 0 1 N N N 9.688 14.789 40.634 -0.275 0.031 4.359 "C3'" DEG 1 DEG "C4'" "C4'" C 0 1 N N N 9.603 14.016 41.933 -0.434 -1.003 5.474 "C4'" DEG 2 DEG "C1'" "C1'" C 0 1 N N N 9.043 15.414 38.134 -0.671 0.497 1.936 "C1'" DEG 3 DEG "C2'" "C2'" C 0 1 N N N 8.857 14.564 39.379 -0.830 -0.538 3.051 "C2'" DEG 4 DEG C2 C2 C 0 1 N N S 7.214 14.873 34.813 -1.553 0.464 -1.620 C2 DEG 5 DEG O2 O2 O 0 1 N N N 7.411 15.380 33.504 -1.352 1.458 -2.627 O2 DEG 6 DEG C3 C3 C 0 1 N N S 7.368 13.296 34.758 -0.807 -0.815 -2.007 C3 DEG 7 DEG O3 O3 O 0 1 N N N 6.380 12.757 33.874 -1.193 -1.220 -3.322 O3 DEG 8 DEG C4 C4 C 0 1 N N S 8.766 12.925 34.233 0.698 -0.532 -1.978 C4 DEG 9 DEG O4 O4 O 0 1 N N N 8.919 11.486 34.185 1.419 -1.747 -2.191 O4 DEG 10 DEG C5 C5 C 0 1 N N R 9.851 13.519 35.197 1.070 0.050 -0.613 C5 DEG 11 DEG O5 O5 O 0 1 N N N 9.681 15.002 35.281 0.374 1.279 -0.407 O5 DEG 12 DEG C6 C6 C 0 1 N N N 11.262 13.209 34.710 2.578 0.305 -0.563 C6 DEG 13 DEG O6 O6 O 0 1 N N N 11.515 13.785 33.446 2.928 0.844 0.712 O6 DEG 14 DEG O1 O1 O 0 1 N N N 8.112 14.964 37.110 -1.189 -0.034 0.715 O1 DEG 15 DEG C1 C1 C 0 1 N N S 8.335 15.459 35.776 -1.012 0.973 -0.281 C1 DEG 16 DEG "H3'1" "H3'1" H 0 0 N N N 10.754 14.735 40.312 -0.823 0.936 4.622 "H3'1" DEG 17 DEG "H3'2" "H3'2" H 0 0 N N N 9.554 15.862 40.904 0.780 0.270 4.232 "H3'2" DEG 18 DEG "H4'1" "H4'1" H 0 0 N N N 10.212 14.181 42.853 -0.039 -0.597 6.405 "H4'1" DEG 19 DEG "H4'2" "H4'2" H 0 0 N N N 9.737 12.943 41.663 -1.490 -1.242 5.601 "H4'2" DEG 20 DEG "H4'3" "H4'3" H 0 0 N N N 8.537 14.070 42.255 0.113 -1.908 5.211 "H4'3" DEG 21 DEG "H1'1" "H1'1" H 0 0 N N N 10.099 15.417 37.776 -1.219 1.402 2.199 "H1'1" DEG 22 DEG "H1'2" "H1'2" H 0 0 N N N 8.947 16.504 38.346 0.384 0.735 1.810 "H1'2" DEG 23 DEG "H2'1" "H2'1" H 0 0 N N N 7.781 14.613 39.668 -0.282 -1.442 2.788 "H2'1" DEG 24 DEG "H2'2" "H2'2" H 0 0 N N N 8.969 13.495 39.082 -1.886 -0.776 3.178 "H2'2" DEG 25 DEG H2 H2 H 0 1 N N N 6.200 15.150 35.186 -2.618 0.252 -1.525 H2 DEG 26 DEG HO2 HA H 0 1 N Y N 6.741 15.030 32.929 -1.837 2.245 -2.344 HO2 DEG 27 DEG H3 H3 H 0 1 N N N 7.227 12.871 35.779 -1.044 -1.606 -1.296 H3 DEG 28 DEG HO3 HB H 0 1 N Y N 6.472 11.812 33.841 -2.145 -1.388 -3.294 HO3 DEG 29 DEG H4 H4 H 0 1 N N N 8.904 13.348 33.211 0.950 0.182 -2.761 H4 DEG 30 DEG HO4 HC H 0 1 N Y N 9.782 11.257 33.861 1.156 -2.080 -3.060 HO4 DEG 31 DEG H5 H5 H 0 1 N N N 9.713 13.080 36.213 0.796 -0.656 0.169 H5 DEG 32 DEG H61 H6C1 H 0 1 N N N 11.458 12.111 34.704 3.110 -0.632 -0.720 H61 DEG 33 DEG H62 H6C2 H 0 1 N N N 12.028 13.518 35.459 2.852 1.014 -1.344 H62 DEG 34 DEG HO6 H6 H 0 1 N Y N 12.394 13.592 33.143 3.884 0.989 0.702 HO6 DEG 35 DEG H1 H1 H 0 1 N N N 8.290 16.573 35.774 -1.556 1.871 0.010 H1 DEG 36 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DEG "C3'" "C4'" SING N N 1 DEG "C3'" "C2'" SING N N 2 DEG "C3'" "H3'1" SING N N 3 DEG "C3'" "H3'2" SING N N 4 DEG "C4'" "H4'1" SING N N 5 DEG "C4'" "H4'2" SING N N 6 DEG "C4'" "H4'3" SING N N 7 DEG "C1'" "C2'" SING N N 8 DEG "C1'" O1 SING N N 9 DEG "C1'" "H1'1" SING N N 10 DEG "C1'" "H1'2" SING N N 11 DEG "C2'" "H2'1" SING N N 12 DEG "C2'" "H2'2" SING N N 13 DEG C2 O2 SING N N 14 DEG C2 C3 SING N N 15 DEG C2 C1 SING N N 16 DEG C2 H2 SING N N 17 DEG O2 HO2 SING N N 18 DEG C3 O3 SING N N 19 DEG C3 C4 SING N N 20 DEG C3 H3 SING N N 21 DEG O3 HO3 SING N N 22 DEG C4 O4 SING N N 23 DEG C4 C5 SING N N 24 DEG C4 H4 SING N N 25 DEG O4 HO4 SING N N 26 DEG C5 O5 SING N N 27 DEG C5 C6 SING N N 28 DEG C5 H5 SING N N 29 DEG O5 C1 SING N N 30 DEG C6 O6 SING N N 31 DEG C6 H61 SING N N 32 DEG C6 H62 SING N N 33 DEG O6 HO6 SING N N 34 DEG O1 C1 SING N N 35 DEG C1 H1 SING N N 36 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DEG SMILES ACDLabs 10.04 "O(CCCC)C1OC(C(O)C(O)C1O)CO" DEG SMILES_CANONICAL CACTVS 3.341 "CCCCO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1O" DEG SMILES CACTVS 3.341 "CCCCO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O" DEG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCO[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O" DEG SMILES "OpenEye OEToolkits" 1.5.0 "CCCCOC1C(C(C(C(O1)CO)O)O)O" DEG InChI InChI 1.03 "InChI=1S/C10H20O6/c1-2-3-4-15-10-9(14)8(13)7(12)6(5-11)16-10/h6-14H,2-5H2,1H3/t6-,7-,8+,9+,10+/m1/s1" DEG InChIKey InChI 1.03 BZANQLIRVMZFOS-ZJDVBMNYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DEG "SYSTEMATIC NAME" ACDLabs 10.04 "butyl alpha-D-mannopyranoside" DEG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3S,4S,5S,6R)-2-butoxy-6-(hydroxymethyl)oxane-3,4,5-triol" # _pdbx_chem_comp_related.comp_id DEG _pdbx_chem_comp_related.related_comp_id MAN _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 DEG C1 MAN C1 "Carbohydrate core" 2 DEG C2 MAN C2 "Carbohydrate core" 3 DEG C3 MAN C3 "Carbohydrate core" 4 DEG C4 MAN C4 "Carbohydrate core" 5 DEG C5 MAN C5 "Carbohydrate core" 6 DEG C6 MAN C6 "Carbohydrate core" 7 DEG O1 MAN O1 "Carbohydrate core" 8 DEG O2 MAN O2 "Carbohydrate core" 9 DEG O3 MAN O3 "Carbohydrate core" 10 DEG O4 MAN O4 "Carbohydrate core" 11 DEG O5 MAN O5 "Carbohydrate core" 12 DEG O6 MAN O6 "Carbohydrate core" 13 DEG H1 MAN H1 "Carbohydrate core" 14 DEG H2 MAN H2 "Carbohydrate core" 15 DEG H3 MAN H3 "Carbohydrate core" 16 DEG H4 MAN H4 "Carbohydrate core" 17 DEG H5 MAN H5 "Carbohydrate core" 18 DEG HO6 MAN HO6 "Carbohydrate core" 19 DEG H61 MAN H61 "Carbohydrate core" 20 DEG H62 MAN H62 "Carbohydrate core" 21 DEG HO2 MAN HO2 "Carbohydrate core" 22 DEG HO3 MAN HO3 "Carbohydrate core" 23 DEG HO4 MAN HO4 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support DEG "CARBOHYDRATE ISOMER" D PDB ? DEG "CARBOHYDRATE RING" pyranose PDB ? DEG "CARBOHYDRATE ANOMER" alpha PDB ? DEG "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DEG "Create component" 2004-02-05 EBI DEG "Modify descriptor" 2011-06-04 RCSB DEG "Other modification" 2020-07-03 RCSB DEG "Modify parent residue" 2020-07-17 RCSB DEG "Modify name" 2020-07-17 RCSB DEG "Modify synonyms" 2020-07-17 RCSB DEG "Modify internal type" 2020-07-17 RCSB DEG "Modify linking type" 2020-07-17 RCSB DEG "Modify atom id" 2020-07-17 RCSB DEG "Modify component atom id" 2020-07-17 RCSB DEG "Modify leaving atom flag" 2020-07-17 RCSB ##