data_DFT # _chem_comp.id DFT _chem_comp.name "1-[2-DEOXYRIBOFURANOSYL]-2,4-DIFLUORO-5-METHYL-BENZENE-5'MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H15 F2 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-09-28 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 324.214 _chem_comp.one_letter_code N _chem_comp.three_letter_code DFT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1BW7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DFT P P P 0 1 N N N -1.523 9.912 14.451 1.032 0.115 4.120 P DFT 1 DFT OP1 O1P O 0 1 N N N -2.453 10.952 13.963 1.815 -1.041 3.632 OP1 DFT 2 DFT OP2 O2P O 0 1 N N N -0.417 10.268 15.368 2.033 1.230 4.710 OP2 DFT 3 DFT OP3 O3P O 0 1 N Y N -0.920 9.139 13.172 0.024 -0.367 5.279 OP3 DFT 4 DFT "O5'" O5* O 0 1 N N N -2.399 8.743 15.139 0.187 0.743 2.902 "O5'" DFT 5 DFT "C5'" C5* C 0 1 N N N -3.532 8.184 14.482 -0.677 -0.288 2.423 "C5'" DFT 6 DFT "C4'" C4* C 0 1 N N R -4.060 6.961 15.236 -1.512 0.245 1.258 "C4'" DFT 7 DFT "O4'" O4* O 0 1 N N N -3.028 5.994 15.379 -0.653 0.631 0.170 "O4'" DFT 8 DFT "C3'" C3* C 0 1 N N S -4.615 7.204 16.652 -2.449 -0.860 0.735 "C3'" DFT 9 DFT "O3'" O3* O 0 1 N N N -6.036 7.039 16.626 -3.816 -0.461 0.856 "O3'" DFT 10 DFT "C2'" C2* C 0 1 N N N -3.907 6.149 17.512 -2.059 -1.014 -0.754 "C2'" DFT 11 DFT "C1'" C1* C 0 1 N N R -3.301 5.184 16.506 -1.366 0.340 -1.050 "C1'" DFT 12 DFT C2 C2 C 0 1 Y N N -1.910 3.164 17.188 -0.836 0.471 -3.495 C2 DFT 13 DFT C4 C4 C 0 1 Y N N 0.446 3.368 17.662 1.353 -0.038 -4.324 C4 DFT 14 DFT C5 C5 C 0 1 Y N N 0.367 4.792 17.565 1.778 -0.308 -3.035 C5 DFT 15 DFT C5M C5M C 0 1 N N N 1.569 5.734 17.738 3.202 -0.733 -2.784 C5M DFT 16 DFT C6 C6 C 0 1 Y N N -0.883 5.380 17.287 0.898 -0.183 -1.976 C6 DFT 17 DFT F4 F4 F 0 1 N N N 1.616 2.769 17.863 2.214 -0.160 -5.359 F4 DFT 18 DFT C3 C3 C 0 1 Y N N -0.687 2.565 17.498 0.044 0.346 -4.555 C3 DFT 19 DFT F2 F2 F 0 1 N N N -2.996 2.410 17.056 -2.113 0.852 -3.718 F2 DFT 20 DFT C1 C1 C 0 1 Y N N -2.000 4.559 17.003 -0.408 0.205 -2.205 C1 DFT 21 DFT HOP2 2HOP H 0 0 N N N 0.180 9.599 15.681 2.518 0.814 5.435 HOP2 DFT 22 DFT HOP3 3HOP H 0 0 N N N -0.322 8.470 13.485 -0.464 0.414 5.568 HOP3 DFT 23 DFT "H5'" 1H5* H 0 1 N N N -3.269 7.840 13.477 -1.338 -0.609 3.228 "H5'" DFT 24 DFT "H5''" 2H5* H 0 0 N N N -4.341 8.913 14.406 -0.079 -1.134 2.084 "H5''" DFT 25 DFT "H4'" H4* H 0 1 N N N -4.847 6.490 14.627 -2.099 1.103 1.586 "H4'" DFT 26 DFT "H3'" H3* H 0 1 N N N -4.330 8.217 16.978 -2.276 -1.793 1.273 "H3'" DFT 27 DFT "HO3'" *HO3 H 0 0 N Y N -6.378 7.188 17.499 -4.348 -1.164 0.461 "HO3'" DFT 28 DFT "H2'" 1H2* H 0 1 N N N -4.564 5.599 18.192 -2.945 -1.141 -1.377 "H2'" DFT 29 DFT "H2''" 2H2* H 0 0 N N N -3.113 6.641 18.091 -1.366 -1.844 -0.892 "H2''" DFT 30 DFT "H1'" H1* H 0 1 N N N -4.035 4.410 16.207 -2.107 1.113 -1.256 "H1'" DFT 31 DFT H71 1H5M H 0 1 N N N 1.652 6.442 16.914 3.271 -1.820 -2.835 H71 DFT 32 DFT H72 2H5M H 0 1 N N N 1.491 6.289 18.674 3.851 -0.291 -3.540 H72 DFT 33 DFT H73 3H5M H 0 1 N N N 2.501 5.167 17.783 3.513 -0.395 -1.795 H73 DFT 34 DFT H6 H6 H 0 1 N N N -0.989 6.465 17.277 1.231 -0.390 -0.970 H6 DFT 35 DFT H3 H3 H 0 1 N N N -0.613 1.508 17.621 -0.288 0.553 -5.561 H3 DFT 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DFT P OP1 DOUB N N 1 DFT P OP2 SING N N 2 DFT P OP3 SING N N 3 DFT P "O5'" SING N N 4 DFT OP2 HOP2 SING N N 5 DFT OP3 HOP3 SING N N 6 DFT "O5'" "C5'" SING N N 7 DFT "C5'" "C4'" SING N N 8 DFT "C5'" "H5'" SING N N 9 DFT "C5'" "H5''" SING N N 10 DFT "C4'" "O4'" SING N N 11 DFT "C4'" "C3'" SING N N 12 DFT "C4'" "H4'" SING N N 13 DFT "O4'" "C1'" SING N N 14 DFT "C3'" "O3'" SING N N 15 DFT "C3'" "C2'" SING N N 16 DFT "C3'" "H3'" SING N N 17 DFT "O3'" "HO3'" SING N N 18 DFT "C2'" "C1'" SING N N 19 DFT "C2'" "H2'" SING N N 20 DFT "C2'" "H2''" SING N N 21 DFT "C1'" C1 SING N N 22 DFT "C1'" "H1'" SING N N 23 DFT C2 C3 DOUB Y N 24 DFT C2 F2 SING N N 25 DFT C2 C1 SING Y N 26 DFT C4 C5 DOUB Y N 27 DFT C4 F4 SING N N 28 DFT C4 C3 SING Y N 29 DFT C5 C5M SING N N 30 DFT C5 C6 SING Y N 31 DFT C5M H71 SING N N 32 DFT C5M H72 SING N N 33 DFT C5M H73 SING N N 34 DFT C6 C1 DOUB Y N 35 DFT C6 H6 SING N N 36 DFT C3 H3 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DFT SMILES ACDLabs 10.04 "O=P(OCC2OC(c1cc(c(F)cc1F)C)CC2O)(O)O" DFT SMILES_CANONICAL CACTVS 3.341 "Cc1cc([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)c(F)cc1F" DFT SMILES CACTVS 3.341 "Cc1cc([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)c(F)cc1F" DFT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1cc(c(cc1F)F)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O" DFT SMILES "OpenEye OEToolkits" 1.5.0 "Cc1cc(c(cc1F)F)C2CC(C(O2)COP(=O)(O)O)O" DFT InChI InChI 1.03 "InChI=1S/C12H15F2O6P/c1-6-2-7(9(14)3-8(6)13)11-4-10(15)12(20-11)5-19-21(16,17)18/h2-3,10-12,15H,4-5H2,1H3,(H2,16,17,18)/t10-,11+,12+/m0/s1" DFT InChIKey InChI 1.03 NMMWBGNJJMNAIJ-QJPTWQEYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DFT "SYSTEMATIC NAME" ACDLabs 10.04 "(1R)-1,4-anhydro-2-deoxy-1-(2,4-difluoro-5-methylphenyl)-5-O-phosphono-D-erythro-pentitol" DFT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(2,4-difluoro-5-methyl-phenyl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DFT "Create component" 1999-09-28 RCSB DFT "Modify descriptor" 2011-06-04 RCSB #