data_DFX # _chem_comp.id DFX _chem_comp.name "1,5-anhydro-2-deoxy-2-fluoro-D-xylitol" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H9 F O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "1,2-DEOXY-2-FLUORO-XYLOPYRANOSE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 136.122 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DFX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1BVV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id DFX _pdbx_chem_comp_synonyms.name "1,2-DEOXY-2-FLUORO-XYLOPYRANOSE" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DFX C1 C1 C 0 1 N N N 32.825 21.620 35.045 -1.065 1.481 0.173 C1 DFX 1 DFX C2 C2 C 0 1 N N S 32.938 20.726 36.299 -1.215 0.030 -0.290 C2 DFX 2 DFX C3 C3 C 0 1 N N S 33.532 21.505 37.480 -0.026 -0.788 0.223 C3 DFX 3 DFX C4 C4 C 0 1 N N R 34.808 22.290 37.100 1.273 -0.149 -0.278 C4 DFX 4 DFX C5 C5 C 0 1 N N N 35.244 22.046 35.629 1.327 1.310 0.184 C5 DFX 5 DFX O3 O3 O 0 1 N N N 33.816 20.605 38.544 -0.120 -2.127 -0.265 O3 DFX 6 DFX O4 O4 O 0 1 N N N 34.572 23.680 37.296 2.392 -0.860 0.254 O4 DFX 7 DFX O5 O5 O 0 1 N N N 34.125 22.149 34.693 0.177 2.005 -0.302 O5 DFX 8 DFX F2 F2 F 0 1 N N N 31.674 20.193 36.668 -2.404 -0.503 0.221 F2 DFX 9 DFX H1 H11 H 0 1 N N N 32.437 21.022 34.207 -1.887 2.077 -0.225 H1 DFX 10 DFX H12 H12 H 0 1 N N N 32.142 22.455 35.258 -1.083 1.519 1.262 H12 DFX 11 DFX H2 H2 H 0 1 N N N 33.611 19.894 36.045 -1.238 -0.005 -1.379 H2 DFX 12 DFX H3 H3 H 0 1 N N N 32.783 22.247 37.794 -0.031 -0.794 1.314 H3 DFX 13 DFX H4 H4 H 0 1 N N N 35.623 21.933 37.746 1.300 -0.187 -1.367 H4 DFX 14 DFX H51 H51 H 0 1 N N N 35.997 22.801 35.358 1.340 1.345 1.273 H51 DFX 15 DFX H52 H52 H 0 1 N N N 35.648 21.025 35.561 2.229 1.781 -0.207 H52 DFX 16 DFX HO3 HO3 H 0 1 N N N 33.879 19.721 38.203 -0.923 -2.590 0.009 HO3 DFX 17 DFX HO4 HO4 H 0 1 N N N 34.519 23.865 38.226 3.249 -0.510 -0.023 HO4 DFX 18 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DFX C1 C2 SING N N 1 DFX C1 O5 SING N N 2 DFX C1 H1 SING N N 3 DFX C1 H12 SING N N 4 DFX C2 C3 SING N N 5 DFX C2 F2 SING N N 6 DFX C2 H2 SING N N 7 DFX C3 C4 SING N N 8 DFX C3 O3 SING N N 9 DFX C3 H3 SING N N 10 DFX C4 C5 SING N N 11 DFX C4 O4 SING N N 12 DFX C4 H4 SING N N 13 DFX C5 O5 SING N N 14 DFX C5 H51 SING N N 15 DFX C5 H52 SING N N 16 DFX O3 HO3 SING N N 17 DFX O4 HO4 SING N N 18 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DFX SMILES ACDLabs 10.04 "FC1COCC(O)C1O" DFX SMILES_CANONICAL CACTVS 3.341 "O[C@@H]1COC[C@H](F)[C@H]1O" DFX SMILES CACTVS 3.341 "O[CH]1COC[CH](F)[CH]1O" DFX SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@H]([C@@H]([C@H](CO1)F)O)O" DFX SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(C(CO1)F)O)O" DFX InChI InChI 1.03 "InChI=1S/C5H9FO3/c6-3-1-9-2-4(7)5(3)8/h3-5,7-8H,1-2H2/t3-,4+,5+/m0/s1" DFX InChIKey InChI 1.03 YIJTWYXBSRZXRS-VPENINKCSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DFX "SYSTEMATIC NAME" ACDLabs 10.04 "1,5-anhydro-2-deoxy-2-fluoro-D-xylitol" DFX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(3R,4S,5S)-5-fluorooxane-3,4-diol" DFX "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 D-1-deoxy-Xylp2fluoro # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support DFX "CARBOHYDRATE ISOMER" D PDB ? DFX "CARBOHYDRATE RING" pyranose PDB ? DFX "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DFX "Create component" 1999-07-08 EBI DFX "Modify descriptor" 2011-06-04 RCSB DFX "Other modification" 2020-07-03 RCSB DFX "Modify name" 2020-07-17 RCSB DFX "Modify synonyms" 2020-07-17 RCSB DFX "Modify linking type" 2020-07-17 RCSB DFX "Modify atom id" 2020-07-17 RCSB DFX "Modify component atom id" 2020-07-17 RCSB ##