data_DG2
#
_chem_comp.id DG2
_chem_comp.name "(2R)-2,3-diphosphoglyceric acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C3 H8 O10 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
;2,3-Bisphosphoglyceric acid; 2,3-bisphosphoglycerate; 2,3-BPG; 2,3-diphosphoglyceric acid; 2,3-diphosphoglycerate;
2,3-DPG; (2~{R})-2,3-diphosphonooxypropanoic acid
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 266.037
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DG2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3FDZ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DG2 C3 C1 C 0 1 N N R -0.377 -20.014 29.452 -0.692 -0.786 0.578 C3 DG2 1
DG2 C4 C2 C 0 1 N N N -0.630 -20.197 27.946 0.630 -0.136 0.993 C4 DG2 2
DG2 O2 O1 O 0 1 N N N 0.947 -20.504 29.861 -1.384 0.079 -0.325 O2 DG2 3
DG2 O5 O2 O 0 1 N N N -1.982 -19.815 27.603 1.483 -0.020 -0.147 O5 DG2 4
DG2 O7 O3 O 0 1 N N N 0.283 -17.674 29.418 -0.689 -2.250 -1.268 O7 DG2 5
DG2 O8 O4 O 0 1 N N N -1.746 -18.179 30.132 0.142 -3.109 0.590 O8 DG2 6
DG2 O9 O5 O 0 1 N N N 2.567 -20.912 31.664 -2.773 1.658 1.253 O9 DG2 7
DG2 O10 O6 O 0 1 N N N 0.161 -21.710 31.850 -3.372 1.495 -1.302 O10 DG2 8
DG2 O11 O7 O 0 1 N N N 1.762 -22.811 30.206 -3.782 -0.436 0.270 O11 DG2 9
DG2 P1 P1 P 0 1 N N N 1.391 -21.571 30.986 -2.848 0.675 -0.020 P1 DG2 10
DG2 C7 C3 C 0 1 N N N -0.615 -18.525 29.694 -0.413 -2.102 -0.101 C7 DG2 11
DG2 P6 P2 P 0 1 N N N -2.488 -19.832 26.074 2.958 0.621 -0.077 P6 DG2 12
DG2 O15 O8 O 0 1 N N N -1.633 -18.855 25.302 2.879 1.978 0.507 O15 DG2 13
DG2 O14 O9 O 0 1 N N N -3.947 -19.456 26.149 3.902 -0.305 0.842 O14 DG2 14
DG2 O13 O10 O 0 1 N N N -2.246 -21.242 25.593 3.576 0.710 -1.561 O13 DG2 15
DG2 H1 H1 H 0 1 N N N -1.149 -20.577 29.997 -1.307 -0.956 1.461 H1 DG2 16
DG2 H2 H2 H 0 1 N N N -0.475 -21.253 27.680 0.434 0.854 1.404 H2 DG2 17
DG2 H3 H3 H 0 1 N N N 0.076 -19.569 27.383 1.116 -0.753 1.749 H3 DG2 18
DG2 H4 H4 H 0 1 N N N -1.782 -17.233 30.205 0.302 -3.935 0.112 H4 DG2 19
DG2 H5 H5 H 0 1 N N N 3.358 -21.405 31.477 -2.178 2.411 1.133 H5 DG2 20
DG2 H6 H6 H 0 1 N N N -0.193 -22.587 31.759 -4.250 1.883 -1.189 H6 DG2 21
DG2 H7 H7 H 0 1 N N N -4.089 -18.641 25.683 3.999 -1.211 0.518 H7 DG2 22
DG2 H8 H8 H 0 1 N N N -1.600 -21.233 24.896 4.465 1.088 -1.595 H8 DG2 23
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DG2 O15 P6 DOUB N N 1
DG2 O13 P6 SING N N 2
DG2 P6 O14 SING N N 3
DG2 P6 O5 SING N N 4
DG2 O5 C4 SING N N 5
DG2 C4 C3 SING N N 6
DG2 O7 C7 DOUB N N 7
DG2 C3 C7 SING N N 8
DG2 C3 O2 SING N N 9
DG2 C7 O8 SING N N 10
DG2 O2 P1 SING N N 11
DG2 O11 P1 DOUB N N 12
DG2 P1 O9 SING N N 13
DG2 P1 O10 SING N N 14
DG2 C3 H1 SING N N 15
DG2 C4 H2 SING N N 16
DG2 C4 H3 SING N N 17
DG2 O8 H4 SING N N 18
DG2 O9 H5 SING N N 19
DG2 O10 H6 SING N N 20
DG2 O14 H7 SING N N 21
DG2 O13 H8 SING N N 22
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DG2 InChI InChI 1.03 "InChI=1S/C3H8O10P2/c4-3(5)2(13-15(9,10)11)1-12-14(6,7)8/h2H,1H2,(H,4,5)(H2,6,7,8)(H2,9,10,11)/t2-/m1/s1"
DG2 InChIKey InChI 1.03 XOHUEYCVLUUEJJ-UWTATZPHSA-N
DG2 SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@@H](CO[P](O)(O)=O)O[P](O)(O)=O"
DG2 SMILES CACTVS 3.385 "OC(=O)[CH](CO[P](O)(O)=O)O[P](O)(O)=O"
DG2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "C([C@H](C(=O)O)OP(=O)(O)O)OP(=O)(O)O"
DG2 SMILES "OpenEye OEToolkits" 2.0.5 "C(C(C(=O)O)OP(=O)(O)O)OP(=O)(O)O"
#
_pdbx_chem_comp_identifier.comp_id DG2
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.5
_pdbx_chem_comp_identifier.identifier "(2~{R})-2,3-diphosphonooxypropanoic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DG2 "Create component" 1999-07-08 RCSB
DG2 "Modify descriptor" 2011-06-04 RCSB
DG2 "Modify model coordinates code" 2016-07-13 RCSB
DG2 "Modify synonyms" 2020-06-05 PDBE
# #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 DG2 "2,3-Bisphosphoglyceric acid" ? ?
2 DG2 "2,3-bisphosphoglycerate" ? ?
3 DG2 "2,3-BPG" ? ?
4 DG2 "2,3-diphosphoglyceric acid" ? ?
5 DG2 "2,3-diphosphoglycerate" ? ?
6 DG2 "2,3-DPG" ? ?
7 DG2 "(2~{R})-2,3-diphosphonooxypropanoic acid" ? ?
##