data_DG3 # _chem_comp.id DG3 _chem_comp.name "2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 N5 O12 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 491.182 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DG3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1QSS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DG3 PG PG P 0 1 N N N -3.281 22.133 -1.640 -1.092 -0.413 6.888 PG DG3 1 DG3 O1G O1G O 0 1 N N N -2.103 22.812 -2.232 -1.948 0.768 6.644 O1G DG3 2 DG3 O2G O2G O 0 1 N N N -3.671 22.432 -0.243 -1.813 -1.390 7.945 O2G DG3 3 DG3 O3G O3G O 0 1 N N N -2.974 20.553 -1.635 0.326 0.064 7.480 O3G DG3 4 DG3 O3B O3B O 0 1 N N N -4.552 22.274 -2.633 -0.857 -1.200 5.503 O3B DG3 5 DG3 PB PB P 0 1 N N R -5.483 23.486 -3.151 -0.136 -0.170 4.498 PB DG3 6 DG3 O1B O1B O 0 1 N N N -6.336 22.800 -4.153 -1.008 1.008 4.292 O1B DG3 7 DG3 O2B O2B O 0 1 N N N -6.114 24.103 -1.958 1.265 0.304 5.131 O2B DG3 8 DG3 O3A O3A O 0 1 N N N -4.505 24.533 -3.909 0.129 -0.895 3.086 O3A DG3 9 DG3 PA PA P 0 1 N N R -4.092 26.072 -3.698 0.848 0.187 2.135 PA DG3 10 DG3 O1A O1A O 0 1 N N N -2.871 26.322 -4.501 2.122 0.617 2.753 O1A DG3 11 DG3 O2A O2A O 0 1 N N N -4.115 26.429 -2.261 -0.116 1.463 1.950 O2A DG3 12 DG3 "O5'" O5* O 0 1 N N N -5.351 26.712 -4.437 1.145 -0.474 0.698 "O5'" DG3 13 DG3 "C5'" C5* C 0 1 N N N -6.547 27.058 -3.713 1.780 0.530 -0.095 "C5'" DG3 14 DG3 "C4'" C4* C 0 1 N N S -7.772 26.641 -4.492 2.091 -0.036 -1.482 "C4'" DG3 15 DG3 "O4'" O4* O 0 1 N N N -7.804 27.353 -5.756 0.872 -0.334 -2.199 "O4'" DG3 16 DG3 "C3'" C3* C 0 1 N N N -7.849 25.172 -4.876 2.781 1.033 -2.366 "C3'" DG3 17 DG3 "C2'" C2* C 0 1 N N N -8.768 25.205 -6.090 2.437 0.544 -3.794 "C2'" DG3 18 DG3 "C1'" C1* C 0 1 N N R -8.348 26.514 -6.760 1.206 -0.361 -3.597 "C1'" DG3 19 DG3 N9 N9 N 0 1 Y N N -7.344 26.317 -7.801 0.082 0.145 -4.388 N9 DG3 20 DG3 C8 C8 C 0 1 Y N N -5.976 26.305 -7.656 -0.853 1.049 -3.973 C8 DG3 21 DG3 N7 N7 N 0 1 Y N N -5.345 26.090 -8.777 -1.705 1.272 -4.931 N7 DG3 22 DG3 C5 C5 C 0 1 Y N N -6.355 25.954 -9.719 -1.368 0.528 -6.013 C5 DG3 23 DG3 C6 C6 C 0 1 N N N -6.285 25.706 -11.114 -1.917 0.368 -7.307 C6 DG3 24 DG3 O6 O6 O 0 1 N N N -5.282 25.553 -11.819 -2.915 0.982 -7.644 O6 DG3 25 DG3 N1 N1 N 0 1 N N N -7.551 25.644 -11.685 -1.303 -0.478 -8.164 N1 DG3 26 DG3 C2 C2 C 0 1 N N N -8.733 25.800 -11.006 -0.191 -1.164 -7.775 C2 DG3 27 DG3 N2 N2 N 0 1 N N N -9.855 25.709 -11.733 0.406 -2.021 -8.664 N2 DG3 28 DG3 N3 N3 N 0 1 N N N -8.812 26.030 -9.709 0.327 -1.024 -6.576 N3 DG3 29 DG3 C4 C4 C 0 1 Y N N -7.594 26.094 -9.133 -0.221 -0.199 -5.677 C4 DG3 30 DG3 HOG2 2HOG H 0 0 N N N -4.425 21.997 0.136 -1.934 -0.881 8.758 HOG2 DG3 31 DG3 HOG3 3HOG H 0 0 N N N -3.728 20.118 -1.255 0.852 -0.733 7.625 HOG3 DG3 32 DG3 HOB2 2HOB H 0 0 N N N -6.662 24.816 -2.263 1.802 -0.491 5.249 HOB2 DG3 33 DG3 HOA2 2HOA H 0 0 N N N -3.870 27.338 -2.136 -0.933 1.139 1.545 HOA2 DG3 34 DG3 "H5'1" 1H5* H 0 0 N N N -6.545 26.633 -2.681 2.706 0.842 0.385 "H5'1" DG3 35 DG3 "H5'2" 2H5* H 0 0 N N N -6.572 28.140 -3.446 1.115 1.388 -0.194 "H5'2" DG3 36 DG3 "H4'" H4* H 0 1 N N N -8.614 26.868 -3.798 2.714 -0.926 -1.400 "H4'" DG3 37 DG3 "H3'1" 1H3* H 0 0 N N N -6.864 24.676 -5.044 3.859 1.035 -2.205 "H3'1" DG3 38 DG3 "H3'2" 2H3* H 0 0 N N N -8.173 24.487 -4.057 2.360 2.021 -2.181 "H3'2" DG3 39 DG3 "H2'1" 1H2* H 0 0 N N N -8.724 24.302 -6.743 3.266 -0.024 -4.213 "H2'1" DG3 40 DG3 "H2'2" 2H2* H 0 0 N N N -9.856 25.115 -5.864 2.189 1.389 -4.437 "H2'2" DG3 41 DG3 "H1'" H1* H 0 1 N N N -9.244 26.962 -7.247 1.443 -1.380 -3.902 "H1'" DG3 42 DG3 H8 H8 H 0 1 N N N -5.426 26.456 -6.711 -0.882 1.509 -2.997 H8 DG3 43 DG3 HN1 HN1 H 0 1 N N N -7.618 25.469 -12.687 -1.661 -0.605 -9.056 HN1 DG3 44 DG3 HN21 1HN2 H 0 0 N N N -10.733 25.825 -11.228 1.201 -2.513 -8.403 HN21 DG3 45 DG3 HN22 2HN2 H 0 0 N N N -9.864 24.824 -12.240 0.033 -2.138 -9.551 HN22 DG3 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG3 PG O1G DOUB N N 1 DG3 PG O2G SING N N 2 DG3 PG O3G SING N N 3 DG3 PG O3B SING N N 4 DG3 O2G HOG2 SING N N 5 DG3 O3G HOG3 SING N N 6 DG3 O3B PB SING N N 7 DG3 PB O1B DOUB N N 8 DG3 PB O2B SING N N 9 DG3 PB O3A SING N N 10 DG3 O2B HOB2 SING N N 11 DG3 O3A PA SING N N 12 DG3 PA O1A DOUB N N 13 DG3 PA O2A SING N N 14 DG3 PA "O5'" SING N N 15 DG3 O2A HOA2 SING N N 16 DG3 "O5'" "C5'" SING N N 17 DG3 "C5'" "C4'" SING N N 18 DG3 "C5'" "H5'1" SING N N 19 DG3 "C5'" "H5'2" SING N N 20 DG3 "C4'" "O4'" SING N N 21 DG3 "C4'" "C3'" SING N N 22 DG3 "C4'" "H4'" SING N N 23 DG3 "O4'" "C1'" SING N N 24 DG3 "C3'" "C2'" SING N N 25 DG3 "C3'" "H3'1" SING N N 26 DG3 "C3'" "H3'2" SING N N 27 DG3 "C2'" "C1'" SING N N 28 DG3 "C2'" "H2'1" SING N N 29 DG3 "C2'" "H2'2" SING N N 30 DG3 "C1'" N9 SING N N 31 DG3 "C1'" "H1'" SING N N 32 DG3 N9 C8 SING Y N 33 DG3 N9 C4 SING Y N 34 DG3 C8 N7 DOUB Y N 35 DG3 C8 H8 SING N N 36 DG3 N7 C5 SING Y N 37 DG3 C5 C6 SING N N 38 DG3 C5 C4 DOUB Y N 39 DG3 C6 O6 DOUB N N 40 DG3 C6 N1 SING N N 41 DG3 N1 C2 SING N N 42 DG3 N1 HN1 SING N N 43 DG3 C2 N2 SING N N 44 DG3 C2 N3 DOUB N N 45 DG3 N2 HN21 SING N N 46 DG3 N2 HN22 SING N N 47 DG3 N3 C4 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DG3 SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@H]3CC[C@@H](CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)O3" DG3 SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3CC[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3" DG3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3CC[C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)N=C(NC2=O)N" DG3 SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3CCC(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)N=C(NC2=O)N" DG3 InChI InChI 1.03 "InChI=1S/C10H16N5O12P3/c11-10-13-8-7(9(16)14-10)12-4-15(8)6-2-1-5(25-6)3-24-29(20,21)27-30(22,23)26-28(17,18)19/h4-6H,1-3H2,(H,20,21)(H,22,23)(H2,17,18,19)(H3,11,13,14,16)/t5-,6+/m0/s1" DG3 InChIKey InChI 1.03 HDRRAMINWIWTNU-NTSWFWBYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DG3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2S,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DG3 "Create component" 1999-07-08 RCSB DG3 "Modify descriptor" 2011-06-04 RCSB #