data_DG4 # _chem_comp.id DG4 _chem_comp.name "phosphono (2S)-2-oxidanyl-3-phosphonooxy-propanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C3 H8 O10 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "glycerate 1,3-biphosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-12-18 _chem_comp.pdbx_modified_date 2021-05-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 266.037 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DG4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7C5Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DG4 O2P O1 O 0 1 N N N -20.075 -3.530 4.438 -3.448 -0.449 1.497 O2P DG4 1 DG4 P1 P1 P 0 1 N N N -20.032 -2.864 5.805 -3.400 -0.569 0.022 P1 DG4 2 DG4 O4P O2 O 0 1 N N N -20.240 -3.870 6.913 -3.855 -2.052 -0.410 O4P DG4 3 DG4 O3P O3 O 0 1 N N N -18.613 -2.325 5.999 -4.395 0.511 -0.637 O3P DG4 4 DG4 O1P O4 O 0 1 N N N -21.307 -1.792 5.883 -1.898 -0.298 -0.489 O1P DG4 5 DG4 C1 C1 C 0 1 N N N -22.467 -2.014 6.705 -1.328 0.860 -0.120 C1 DG4 6 DG4 O1 O5 O 0 1 N N N -22.994 -1.045 7.137 -1.941 1.643 0.566 O1 DG4 7 DG4 C2 C2 C 0 1 N N S -23.018 -3.443 7.046 0.076 1.183 -0.562 C2 DG4 8 DG4 O2 O6 O 0 1 N N N -22.177 -3.833 8.100 0.414 2.507 -0.144 O2 DG4 9 DG4 C3 C3 C 0 1 N N N -24.472 -3.810 7.512 1.051 0.186 0.068 C3 DG4 10 DG4 O5P O7 O 0 1 N N N -25.466 -2.808 7.491 2.366 0.419 -0.440 O5P DG4 11 DG4 P2 P2 P 0 1 N N N -25.799 -2.038 6.056 3.646 -0.449 0.007 P2 DG4 12 DG4 O8P O8 O 0 1 N N N -25.093 -0.675 6.071 4.928 -0.000 -0.857 O8P DG4 13 DG4 O7P O9 O 0 1 N N N -27.188 -1.641 5.854 3.940 -0.204 1.571 O7P DG4 14 DG4 O6P O10 O 0 1 N N N -25.393 -3.031 4.952 3.373 -1.885 -0.224 O6P DG4 15 DG4 H5 H1 H 0 1 N N N -20.359 -4.735 6.538 -4.752 -2.284 -0.134 H5 DG4 16 DG4 H6 H2 H 0 1 N N N -18.090 -2.526 5.232 -4.414 0.489 -1.604 H6 DG4 17 DG4 H1 H3 H 0 1 N N N -22.801 -4.077 6.174 0.140 1.117 -1.648 H1 DG4 18 DG4 H2 H4 H 0 1 N N N -22.421 -4.702 8.396 0.378 2.639 0.813 H2 DG4 19 DG4 H4 H5 H 0 1 N N N -24.823 -4.627 6.864 1.052 0.314 1.151 H4 DG4 20 DG4 H3 H6 H 0 1 N N N -24.398 -4.170 8.549 0.741 -0.830 -0.177 H3 DG4 21 DG4 H7 H7 H 0 1 N N N -24.244 -0.762 6.488 5.737 -0.483 -0.640 H7 DG4 22 DG4 H8 H8 H 0 1 N N N -27.535 -2.082 5.087 4.128 0.717 1.796 H8 DG4 23 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG4 O2P P1 DOUB N N 1 DG4 O6P P2 DOUB N N 2 DG4 P1 O1P SING N N 3 DG4 P1 O3P SING N N 4 DG4 P1 O4P SING N N 5 DG4 O7P P2 SING N N 6 DG4 O1P C1 SING N N 7 DG4 P2 O8P SING N N 8 DG4 P2 O5P SING N N 9 DG4 C1 C2 SING N N 10 DG4 C1 O1 DOUB N N 11 DG4 C2 C3 SING N N 12 DG4 C2 O2 SING N N 13 DG4 O5P C3 SING N N 14 DG4 O4P H5 SING N N 15 DG4 O3P H6 SING N N 16 DG4 C2 H1 SING N N 17 DG4 O2 H2 SING N N 18 DG4 C3 H4 SING N N 19 DG4 C3 H3 SING N N 20 DG4 O8P H7 SING N N 21 DG4 O7P H8 SING N N 22 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DG4 InChI InChI 1.03 "InChI=1S/C3H8O10P2/c4-2(1-12-14(6,7)8)3(5)13-15(9,10)11/h2,4H,1H2,(H2,6,7,8)(H2,9,10,11)/t2-/m0/s1" DG4 InChIKey InChI 1.03 LJQLQCAXBUHEAZ-REOHCLBHSA-N DG4 SMILES_CANONICAL CACTVS 3.385 "O[C@@H](CO[P](O)(O)=O)C(=O)O[P](O)(O)=O" DG4 SMILES CACTVS 3.385 "O[CH](CO[P](O)(O)=O)C(=O)O[P](O)(O)=O" DG4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H](C(=O)OP(=O)(O)O)O)OP(=O)(O)O" DG4 SMILES "OpenEye OEToolkits" 2.0.7 "C(C(C(=O)OP(=O)(O)O)O)OP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id DG4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "phosphono (2~{S})-2-oxidanyl-3-phosphonooxy-propanoate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id DG4 _pdbx_chem_comp_synonyms.name "glycerate 1,3-biphosphate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DG4 "Create component" 2008-12-18 PDBJ DG4 "Modify descriptor" 2011-06-04 RCSB DG4 "Modify model coordinates code" 2017-11-16 PDBJ DG4 "Modify model coordinates code" 2020-06-04 PDBJ DG4 "Modify synonyms" 2020-06-04 PDBJ DG4 "Modify synonyms" 2021-03-13 RCSB DG4 "Initial release" 2021-05-26 RCSB ##