data_DGO # _chem_comp.id DGO _chem_comp.name D-glucal _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H10 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-01-14 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 146.141 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DGO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5HJO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DGO C1 C1 C 0 1 N N N -15.430 -47.993 -52.195 -0.439 -2.000 0.066 C1 DGO 1 DGO C5 C2 C 0 1 N N R -16.037 -46.541 -54.054 0.835 -0.012 -0.238 C5 DGO 2 DGO C4 C3 C 0 1 N N S -14.927 -47.231 -54.846 -0.400 0.758 0.250 C4 DGO 3 DGO C6 C5 C 0 1 N N N -17.268 -46.222 -54.872 2.103 0.640 0.316 C6 DGO 4 DGO C3 C4 C 0 1 N N R -13.766 -47.772 -53.987 -1.642 0.108 -0.373 C3 DGO 5 DGO O6 O3 O 0 1 N N N -17.762 -47.357 -55.573 3.251 -0.027 -0.212 O6 DGO 6 DGO O5 O O 0 1 N N N -16.389 -47.295 -52.872 0.738 -1.359 0.236 O5 DGO 7 DGO O4 O2 O 0 1 N N N -14.435 -46.218 -55.711 -0.313 2.122 -0.166 O4 DGO 8 DGO O3 O1 O 0 1 N N N -13.225 -48.940 -54.618 -2.814 0.590 0.287 O3 DGO 9 DGO C2 C C 0 1 N N N -14.202 -48.195 -52.614 -1.558 -1.386 -0.212 C2 DGO 10 DGO H1 H1 H 0 1 N N N -15.704 -48.413 -51.238 -0.454 -3.076 0.160 H1 DGO 11 DGO H5 H2 H 0 1 N N N -15.626 -45.578 -53.718 0.865 -0.007 -1.327 H5 DGO 12 DGO H4 H3 H 0 1 N N N -15.359 -48.060 -55.426 -0.460 0.707 1.337 H4 DGO 13 DGO C61 H4 H 0 1 N N N -17.014 -45.439 -55.602 2.128 1.691 0.026 C61 DGO 14 DGO C62 H5 H 0 1 N N N -18.055 -45.853 -54.197 2.106 0.563 1.403 C62 DGO 15 DGO H3 H6 H 0 1 N N N -12.995 -46.992 -53.901 -1.691 0.359 -1.432 H3 DGO 16 DGO HO6 H7 H 0 1 N N N -18.533 -47.111 -56.071 4.093 0.335 0.097 HO6 DGO 17 DGO HO4 H8 H 0 1 N N N -13.733 -46.570 -56.245 -1.063 2.667 0.110 HO4 DGO 18 DGO HO3 H9 H 0 1 N N N -12.509 -49.280 -54.095 -3.639 0.220 -0.056 HO3 DGO 19 DGO H2 H10 H 0 1 N N N -13.491 -48.675 -51.958 -2.457 -1.973 -0.331 H2 DGO 20 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DGO O4 C4 SING N N 1 DGO O6 C6 SING N N 2 DGO C6 C5 SING N N 3 DGO C4 C5 SING N N 4 DGO C4 C3 SING N N 5 DGO O3 C3 SING N N 6 DGO C5 O5 SING N N 7 DGO C3 C2 SING N N 8 DGO O5 C1 SING N N 9 DGO C2 C1 DOUB N N 10 DGO C1 H1 SING N N 11 DGO C5 H5 SING N N 12 DGO C4 H4 SING N N 13 DGO C6 C61 SING N N 14 DGO C6 C62 SING N N 15 DGO C3 H3 SING N N 16 DGO O6 HO6 SING N N 17 DGO O4 HO4 SING N N 18 DGO O3 HO3 SING N N 19 DGO C2 H2 SING N N 20 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DGO SMILES ACDLabs 12.01 "C=1OC(C(C(C=1)O)O)CO" DGO InChI InChI 1.03 "InChI=1S/C6H10O4/c7-3-5-6(9)4(8)1-2-10-5/h1-2,4-9H,3H2/t4-,5-,6+/m1/s1" DGO InChIKey InChI 1.03 YVECGMZCTULTIS-PBXRRBTRSA-N DGO SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1OC=C[C@@H](O)[C@@H]1O" DGO SMILES CACTVS 3.385 "OC[CH]1OC=C[CH](O)[CH]1O" DGO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C1=CO[C@@H]([C@H]([C@@H]1O)O)CO" DGO SMILES "OpenEye OEToolkits" 2.0.4 "C1=COC(C(C1O)O)CO" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DGO "SYSTEMATIC NAME" ACDLabs 12.01 "1,5-anhydro-2-deoxy-D-arabino-hex-1-enitol" DGO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{R},3~{S},4~{R})-2-(hydroxymethyl)-3,4-dihydro-2~{H}-pyran-3,4-diol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support DGO "CARBOHYDRATE ISOMER" D PDB ? DGO "CARBOHYDRATE RING" dihydropyran PDB ? DGO "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DGO "Create component" 2016-01-14 EBI DGO "Initial release" 2016-07-27 RCSB DGO "Other modification" 2020-07-03 RCSB DGO "Modify internal type" 2020-07-17 RCSB DGO "Modify linking type" 2020-07-17 RCSB DGO "Modify atom id" 2020-07-17 RCSB DGO "Modify component atom id" 2020-07-17 RCSB ##