data_DGS # _chem_comp.id DGS _chem_comp.name "3,6-anhydro-2-O-sulfo-alpha-D-galactopyranose" _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H10 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;3,6-ANHYDRO-D-GALACTOSE-2-SULFATE; 3,6-anhydro-2-O-sulfo-alpha-D-galactose; 3,6-anhydro-2-O-sulfo-D-galactose; 3,6-anhydro-2-O-sulfo-galactose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-01-24 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 242.204 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DGS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 DGS "3,6-ANHYDRO-D-GALACTOSE-2-SULFATE" PDB ? 2 DGS "3,6-anhydro-2-O-sulfo-alpha-D-galactose" PDB ? 3 DGS "3,6-anhydro-2-O-sulfo-D-galactose" PDB ? 4 DGS "3,6-anhydro-2-O-sulfo-galactose" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DGS C1 C1 C 0 1 N N S 27.101 7.496 11.864 -0.508 1.417 0.124 C1 DGS 1 DGS C2 C2 C 0 1 N N R 27.423 6.035 11.449 -0.043 0.039 0.602 C2 DGS 2 DGS C3 C3 C 0 1 N N S 28.800 5.584 11.969 -1.279 -0.866 0.776 C3 DGS 3 DGS C4 C4 C 0 1 N N S 28.800 5.774 13.464 -1.911 -1.005 -0.637 C4 DGS 4 DGS C5 C5 C 0 1 N N R 28.920 7.273 13.513 -2.488 0.431 -0.798 C5 DGS 5 DGS C6 C6 C 0 1 N N N 29.924 7.548 12.381 -2.996 0.725 0.635 C6 DGS 6 DGS O1 O1 O 0 1 N Y N 25.710 7.660 11.798 0.632 2.208 -0.216 O1 DGS 7 DGS O2 O2 O 0 1 N N N 26.364 5.162 11.901 0.837 -0.533 -0.367 O2 DGS 8 DGS O3 O3 O 0 1 N N N 29.807 6.463 11.436 -2.252 -0.114 1.528 O3 DGS 9 DGS O4 O4 O 0 1 N N N 29.934 5.137 14.037 -2.947 -1.989 -0.651 O4 DGS 10 DGS O5 O5 O 0 1 N N N 27.622 7.830 13.172 -1.353 1.290 -1.021 O5 DGS 11 DGS O7 O7 O 0 1 N N N 25.512 2.869 12.436 2.706 -1.220 1.061 O7 DGS 12 DGS O8 O8 O 0 1 N N N 27.865 3.134 11.992 3.023 -0.743 -1.226 O8 DGS 13 DGS O9 O9 O 0 1 N N N 26.302 3.324 10.194 2.414 1.031 0.426 O9 DGS 14 DGS S S S 0 1 N N N 26.512 3.592 11.629 2.313 -0.293 -0.080 S DGS 15 DGS H1 H1 H 0 1 N N N 27.599 8.192 11.173 -1.061 1.908 0.924 H1 DGS 16 DGS H2 H2 H 0 1 N N N 27.478 5.983 10.352 0.474 0.138 1.556 H2 DGS 17 DGS H3 H3 H 0 1 N N N 28.997 4.541 11.681 -1.035 -1.829 1.226 H3 DGS 18 DGS H4 H4 H 0 1 N N N 27.939 5.360 14.010 -1.154 -1.218 -1.393 H4 DGS 19 DGS H5 H5 H 0 1 N N N 29.229 7.692 14.482 -3.263 0.508 -1.560 H5 DGS 20 DGS H61 H61 H 0 1 N N N 29.693 8.506 11.892 -2.824 1.773 0.881 H61 DGS 21 DGS H62 H62 H 0 1 N N N 30.947 7.595 12.782 -4.058 0.494 0.707 H62 DGS 22 DGS HO1 HO1 H 0 1 N N N 25.483 8.548 12.048 0.415 3.098 -0.528 HO1 DGS 23 DGS HO4 HO4 H 0 1 N N N 29.926 5.262 14.979 -3.367 -2.106 -1.514 HO4 DGS 24 DGS HO7 HO7 H 0 1 N N N 25.953 2.262 13.018 3.634 -1.148 1.324 HO7 DGS 25 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DGS C1 C2 SING N N 1 DGS C1 O1 SING N N 2 DGS C1 O5 SING N N 3 DGS C1 H1 SING N N 4 DGS C2 C3 SING N N 5 DGS C2 O2 SING N N 6 DGS C2 H2 SING N N 7 DGS C3 C4 SING N N 8 DGS C3 O3 SING N N 9 DGS C3 H3 SING N N 10 DGS C4 C5 SING N N 11 DGS C4 O4 SING N N 12 DGS C4 H4 SING N N 13 DGS C5 C6 SING N N 14 DGS C5 O5 SING N N 15 DGS C5 H5 SING N N 16 DGS C6 O3 SING N N 17 DGS C6 H61 SING N N 18 DGS C6 H62 SING N N 19 DGS O1 HO1 SING N N 20 DGS O2 S SING N N 21 DGS O4 HO4 SING N N 22 DGS O7 S SING N N 23 DGS O7 HO7 SING N N 24 DGS O8 S DOUB N N 25 DGS O9 S DOUB N N 26 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DGS SMILES ACDLabs 11.02 "O=S(=O)(O)OC1C2OCC(OC1O)C2O" DGS SMILES_CANONICAL CACTVS 3.352 "O[C@H]1O[C@@H]2CO[C@@H]([C@H]2O)[C@H]1O[S](O)(=O)=O" DGS SMILES CACTVS 3.352 "O[CH]1O[CH]2CO[CH]([CH]2O)[CH]1O[S](O)(=O)=O" DGS SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1[C@@H]2[C@@H]([C@H](O1)[C@H]([C@H](O2)O)OS(=O)(=O)O)O" DGS SMILES "OpenEye OEToolkits" 1.7.0 "C1C2C(C(O1)C(C(O2)O)OS(=O)(=O)O)O" DGS InChI InChI 1.03 "InChI=1S/C6H10O8S/c7-3-2-1-12-4(3)5(6(8)13-2)14-15(9,10)11/h2-8H,1H2,(H,9,10,11)/t2-,3+,4+,5-,6+/m1/s1" DGS InChIKey InChI 1.03 BBGPRYFPTZDJIZ-PHYPRBDBSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DGS "SYSTEMATIC NAME" ACDLabs 11.02 "3,6-anhydro-2-O-sulfo-alpha-D-galactopyranose" DGS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(1S,2R,3S,5R,8S)-3,8-dihydroxy-4,7-dioxabicyclo[3.2.1]octan-2-yl] hydrogen sulfate" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support DGS "CARBOHYDRATE ISOMER" D PDB ? DGS "CARBOHYDRATE RING" pyranose PDB ? DGS "CARBOHYDRATE ANOMER" alpha PDB ? DGS "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DGS "Create component" 2001-01-24 RCSB DGS "Modify descriptor" 2011-06-04 RCSB DGS "Other modification" 2020-07-03 RCSB DGS "Modify name" 2020-07-17 RCSB DGS "Modify synonyms" 2020-07-17 RCSB DGS "Modify linking type" 2020-07-17 RCSB ##