data_DGT # _chem_comp.id DGT _chem_comp.name "2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 N5 O13 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 507.181 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DGT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1HK8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DGT PG PG P 0 1 N N N 32.266 78.871 76.218 -6.722 1.739 -0.798 P1 DGT 1 DGT O1G O1G O 0 1 N N N 31.153 79.985 76.366 -7.321 0.703 -1.876 O1 DGT 2 DGT O2G O2G O 0 1 N N N 33.145 78.551 77.503 -6.586 3.195 -1.471 O2 DGT 3 DGT O3G O3G O 0 1 N N N 31.600 77.506 75.758 -7.629 1.817 0.368 O3 DGT 4 DGT O3B O3B O 0 1 N N N 33.211 79.424 75.063 -5.271 1.232 -0.317 O4 DGT 5 DGT PB PB P 0 1 N N S 34.610 78.768 74.667 -4.764 0.060 0.662 P2 DGT 6 DGT O1B O1B O 0 1 N N N 34.597 77.173 74.731 -5.022 0.489 2.192 O5 DGT 7 DGT O2B O2B O 0 1 N N N 34.904 79.361 73.231 -5.508 -1.185 0.368 O6 DGT 8 DGT O3A O3A O 0 1 N N N 35.682 79.283 75.741 -3.190 -0.189 0.432 O7 DGT 9 DGT PA PA P 0 1 N N R 36.293 80.771 75.717 -2.192 -1.411 0.751 P3 DGT 10 DGT O1A O1A O 0 1 N N N 36.826 81.090 77.182 -1.875 -1.448 2.329 O8 DGT 11 DGT O2A O2A O 0 1 N N N 37.451 80.843 74.624 -2.828 -2.685 0.346 O9 DGT 12 DGT "O5'" "O5'" O 0 1 N N N 35.068 81.728 75.281 -0.821 -1.212 -0.068 O10 DGT 13 DGT "C5'" "C5'" C 0 1 N N N 34.201 82.274 76.270 0.228 -2.183 -0.079 C1 DGT 14 DGT "C4'" "C4'" C 0 1 N N R 33.306 83.380 75.714 1.380 -1.680 -0.950 C2 DGT 15 DGT "O4'" "O4'" O 0 1 N N N 34.029 84.594 75.478 2.030 -0.550 -0.330 O11 DGT 16 DGT "C3'" "C3'" C 0 1 N N S 32.567 83.020 74.433 2.503 -2.744 -1.038 C3 DGT 17 DGT "O3'" "O3'" O 0 1 N N N 31.175 82.994 74.711 2.243 -3.674 -2.091 O12 DGT 18 DGT "C2'" "C2'" C 0 1 N N N 32.894 84.114 73.428 3.746 -1.879 -1.358 C4 DGT 19 DGT "C1'" "C1'" C 0 1 N N R 33.803 85.105 74.157 3.348 -0.460 -0.898 C5 DGT 20 DGT N9 N9 N 0 1 Y N N 35.124 85.396 73.513 4.294 0.020 0.112 N1 DGT 21 DGT C8 C8 C 0 1 Y N N 35.944 84.585 72.778 4.145 -0.070 1.466 C6 DGT 22 DGT N7 N7 N 0 1 Y N N 37.088 85.251 72.377 5.176 0.458 2.059 N2 DGT 23 DGT C5 C5 C 0 1 Y N N 37.028 86.519 72.862 6.045 0.916 1.125 C7 DGT 24 DGT C6 C6 C 0 1 N N N 37.806 87.806 72.885 7.301 1.565 1.183 C8 DGT 25 DGT O6 O6 O 0 1 N N N 38.913 87.924 72.312 7.822 1.824 2.254 O13 DGT 26 DGT N1 N1 N 0 1 N N N 37.324 88.886 73.533 7.908 1.891 0.021 N3 DGT 27 DGT C2 C2 C 0 1 N N N 36.144 88.892 74.184 7.317 1.597 -1.172 C9 DGT 28 DGT N2 N2 N 0 1 N N N 35.763 90.040 74.793 7.957 1.939 -2.336 N4 DGT 29 DGT N3 N3 N 0 1 N N N 35.343 87.792 74.245 6.151 0.994 -1.238 N5 DGT 30 DGT C4 C4 C 0 1 Y N N 35.765 86.571 73.584 5.492 0.636 -0.130 C10 DGT 31 DGT HO1G HO1G H 0 0 N N N 30.930 80.090 77.283 -6.777 0.602 -2.669 H1 DGT 32 DGT HO2G HO2G H 0 0 N N N 34.060 78.487 77.254 -7.424 3.563 -1.785 H2 DGT 33 DGT HO1B HO1B H 0 0 N N N 34.594 76.820 73.849 -4.564 1.299 2.456 H3 DGT 34 DGT HO1A HO1A H 0 0 N N N 37.774 81.154 77.168 -1.457 -0.644 2.665 H4 DGT 35 DGT "H5'" "H5'" H 0 1 N N N 33.560 81.468 76.656 0.585 -2.344 0.939 H5 DGT 36 DGT "H5'A" "H5'A" H 0 0 N N N 34.827 82.713 77.061 -0.151 -3.122 -0.483 H6 DGT 37 DGT "H4'" "H4'" H 0 1 N N N 32.558 83.520 76.508 1.021 -1.418 -1.945 H7 DGT 38 DGT "H3'" "H3'" H 0 1 N N N 32.861 82.036 74.038 2.624 -3.262 -0.086 H8 DGT 39 DGT "HO3'" "HO3'" H 0 0 N N N 31.039 82.988 75.651 2.918 -4.360 -2.186 H9 DGT 40 DGT "H2'" "H2'" H 0 1 N N N 33.406 83.692 72.551 4.613 -2.234 -0.800 H10 DGT 41 DGT "H2'A" "H2'A" H 0 0 N N N 31.981 84.605 73.061 3.951 -1.888 -2.429 H11 DGT 42 DGT "H1'" "H1'" H 0 1 N N N 33.273 86.069 74.140 3.338 0.218 -1.752 H12 DGT 43 DGT H8 H8 H 0 1 N N N 35.726 83.554 72.541 3.298 -0.513 1.969 H13 DGT 44 DGT HN2 HN2 H 0 1 N N N 36.453 90.751 74.659 8.818 2.385 -2.303 H14 DGT 45 DGT HN2A HN2A H 0 0 N N N 34.912 90.160 75.304 7.549 1.737 -3.192 H15 DGT 46 DGT H16 H16 H 0 1 N N N 37.869 89.724 73.530 8.770 2.336 0.035 H16 DGT 47 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DGT PG O1G SING N N 1 DGT PG O2G SING N N 2 DGT O1G HO1G SING N N 3 DGT O2G HO2G SING N N 4 DGT O3G PG DOUB N N 5 DGT O3B PG SING N N 6 DGT PB O3B SING N N 7 DGT PB O1B SING N N 8 DGT PB O3A SING N N 9 DGT O1B HO1B SING N N 10 DGT O2B PB DOUB N N 11 DGT PA O3A SING N N 12 DGT PA O1A SING N N 13 DGT O1A HO1A SING N N 14 DGT O2A PA DOUB N N 15 DGT "O5'" PA SING N N 16 DGT "O5'" "C5'" SING N N 17 DGT "C5'" "H5'" SING N N 18 DGT "C5'" "H5'A" SING N N 19 DGT "C4'" "C5'" SING N N 20 DGT "C4'" "H4'" SING N N 21 DGT "O4'" "C4'" SING N N 22 DGT "C3'" "C4'" SING N N 23 DGT "C3'" "O3'" SING N N 24 DGT "C3'" "H3'" SING N N 25 DGT "O3'" "HO3'" SING N N 26 DGT "C2'" "C3'" SING N N 27 DGT "C2'" "C1'" SING N N 28 DGT "C2'" "H2'" SING N N 29 DGT "C2'" "H2'A" SING N N 30 DGT "C1'" "O4'" SING N N 31 DGT "C1'" "H1'" SING N N 32 DGT N9 "C1'" SING N N 33 DGT N9 C4 SING Y N 34 DGT C8 N9 SING Y N 35 DGT C8 H8 SING N N 36 DGT N7 C8 DOUB Y N 37 DGT N7 C5 SING Y N 38 DGT C5 C6 SING N N 39 DGT C5 C4 DOUB Y N 40 DGT C6 N1 SING N N 41 DGT O6 C6 DOUB N N 42 DGT N1 C2 SING N N 43 DGT C2 N3 DOUB N N 44 DGT C2 N2 SING N N 45 DGT N2 HN2 SING N N 46 DGT N2 HN2A SING N N 47 DGT C4 N3 SING N N 48 DGT N1 H16 SING N N 49 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DGT SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)CC3O" DGT SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P@](O)(=O)O[P@](O)(=O)O[P](O)(O)=O)O3" DGT SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3" DGT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@@](=O)(O)OP(=O)(O)O)O)N=C(NC2=O)N" DGT SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N=C(NC2=O)N" DGT InChI InChI 1.03 "InChI=1S/C10H16N5O13P3/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(26-6)2-25-30(21,22)28-31(23,24)27-29(18,19)20/h3-6,16H,1-2H2,(H,21,22)(H,23,24)(H2,18,19,20)(H3,11,13,14,17)/t4-,5+,6+/m0/s1" DGT InChIKey InChI 1.03 HAAZLUGHYHWQIW-KVQBGUIXSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DGT "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxyguanosine 5'-(tetrahydrogen triphosphate)" DGT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DGT "Create component" 1999-07-08 RCSB DGT "Modify descriptor" 2011-06-04 RCSB ##