data_DH4 # _chem_comp.id DH4 _chem_comp.name "2-[(1R)-1-{[(E)-azepan-1-ylmethylidene]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H25 N3 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Mecillinam, bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-06-25 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 327.442 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DH4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3NC8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DH4 C C C 0 1 N N N -11.784 -10.876 5.377 -0.148 -0.107 -2.004 C DH4 1 DH4 N N N 0 1 N N N -10.017 -11.515 3.870 1.324 -0.393 -0.096 N DH4 2 DH4 O O O 0 1 N N N -12.511 -10.512 4.464 0.526 0.863 -2.253 O DH4 3 DH4 CA CA C 0 1 N N R -10.513 -11.676 5.219 0.164 -0.951 -0.795 CA DH4 4 DH4 CAC CAC C 0 1 N N N -9.777 -12.613 3.220 2.391 -1.107 0.058 CAC DH4 5 DH4 CAE CAE C 0 1 N N N -9.708 -13.489 -0.990 5.796 0.292 -0.560 CAE DH4 6 DH4 CAF CAF C 0 1 N N N -9.638 -11.953 -0.965 5.324 1.655 -0.061 CAF DH4 7 DH4 CAG CAG C 0 1 N N N -10.176 -14.095 0.344 5.976 -0.637 0.616 CAG DH4 8 DH4 CAH CAH C 0 1 N N N -8.470 -11.448 -0.098 3.869 1.760 0.129 CAH DH4 9 DH4 CAI CAI C 0 1 N N N -9.066 -13.907 1.408 4.679 -1.426 0.870 CAI DH4 10 DH4 CAJ CAJ C 0 1 N N N -8.908 -11.303 1.371 3.395 0.767 1.219 CAJ DH4 11 DH4 NAL NAL N 0 1 N N N -9.240 -12.603 2.021 3.476 -0.585 0.712 NAL DH4 12 DH4 H1 H1 H 0 1 N N N -12.075 -10.603 6.380 -0.976 -0.368 -2.645 H1 DH4 13 DH4 H2 H2 H 0 1 N N N -9.877 -11.941 6.077 0.386 -1.970 -1.111 H2 DH4 14 DH4 H4 H4 H 0 1 N N N -10.025 -13.560 3.677 2.428 -2.114 -0.329 H4 DH4 15 DH4 H5 H5 H 0 1 N N N -10.411 -13.794 -1.779 5.053 -0.124 -1.241 H5 DH4 16 DH4 H6 H6 H 0 1 N N N -8.706 -13.881 -1.220 6.746 0.405 -1.083 H6 DH4 17 DH4 H7 H7 H 0 1 N N N -9.503 -11.586 -1.993 5.812 1.863 0.891 H7 DH4 18 DH4 H8 H8 H 0 1 N N N -10.581 -11.560 -0.556 5.635 2.413 -0.779 H8 DH4 19 DH4 H9 H9 H 0 1 N N N -11.094 -13.588 0.676 6.787 -1.334 0.405 H9 DH4 20 DH4 H10 H10 H 0 1 N N N -10.378 -15.168 0.210 6.224 -0.053 1.502 H10 DH4 21 DH4 H11 H11 H 0 1 N N N -7.639 -12.166 -0.158 3.617 2.776 0.432 H11 DH4 22 DH4 H12 H12 H 0 1 N N N -8.137 -10.469 -0.474 3.365 1.531 -0.810 H12 DH4 23 DH4 H13 H13 H 0 1 N N N -9.148 -14.692 2.174 4.625 -2.256 0.166 H13 DH4 24 DH4 H14 H14 H 0 1 N N N -8.078 -13.964 0.929 4.701 -1.825 1.884 H14 DH4 25 DH4 H15 H15 H 0 1 N N N -8.089 -10.831 1.934 4.032 0.863 2.099 H15 DH4 26 DH4 H16 H16 H 0 1 N N N -9.798 -10.658 1.407 2.364 0.991 1.491 H16 DH4 27 DH4 N1 N1 N 0 1 N N N ? ? ? -1.558 0.420 0.371 N1 DH4 28 DH4 C3 C3 C 0 1 N N N ? ? ? -2.939 0.389 0.864 C3 DH4 29 DH4 C4 C4 C 0 1 N N N ? ? ? -3.742 -0.807 0.319 C4 DH4 30 DH4 S1 S1 S 0 1 N N N ? ? ? -2.501 -1.750 -0.653 S1 DH4 31 DH4 C6 C6 C 0 1 N N N ? ? ? -1.043 -0.960 0.146 C6 DH4 32 DH4 H3 H3 H 0 1 N N N ? ? ? -1.486 0.974 -0.469 H3 DH4 33 DH4 H18 H18 H 0 1 N N N ? ? ? -2.922 0.336 1.952 H18 DH4 34 DH4 H24 H24 H 0 1 N N N ? ? ? -0.799 -1.448 1.089 H24 DH4 35 DH4 C1 C1 C 0 1 N N N ? ? ? -4.286 -1.659 1.469 C1 DH4 36 DH4 C2 C2 C 0 1 N N N ? ? ? -4.881 -0.326 -0.582 C2 DH4 37 DH4 H17 H17 H 0 1 N N N ? ? ? -4.939 -1.050 2.094 H17 DH4 38 DH4 H20 H20 H 0 1 N N N ? ? ? -4.850 -2.498 1.063 H20 DH4 39 DH4 H21 H21 H 0 1 N N N ? ? ? -3.456 -2.034 2.067 H21 DH4 40 DH4 H22 H22 H 0 1 N N N ? ? ? -4.468 0.233 -1.422 H22 DH4 41 DH4 H23 H23 H 0 1 N N N ? ? ? -5.436 -1.186 -0.956 H23 DH4 42 DH4 H25 H25 H 0 1 N N N ? ? ? -5.550 0.318 -0.010 H25 DH4 43 DH4 C5 C5 C 0 1 N N N ? ? ? -3.629 1.665 0.455 C5 DH4 44 DH4 O1 O1 O 0 1 N N N ? ? ? -4.752 2.051 1.081 O1 DH4 45 DH4 O2 O2 O 0 1 N N N ? ? ? -3.172 2.340 -0.437 O2 DH4 46 DH4 H26 H26 H 0 1 N N N ? ? ? -5.159 2.876 0.784 H26 DH4 47 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DH4 CAE CAF SING N N 1 DH4 CAE CAG SING N N 2 DH4 CAF CAH SING N N 3 DH4 CAH CAJ SING N N 4 DH4 CAG CAI SING N N 5 DH4 CAJ NAL SING N N 6 DH4 CAI NAL SING N N 7 DH4 NAL CAC SING N N 8 DH4 CAC N DOUB N N 9 DH4 N CA SING N N 10 DH4 O C DOUB N N 11 DH4 CA C SING N N 12 DH4 C H1 SING N N 13 DH4 CA H2 SING N N 14 DH4 CAC H4 SING N N 15 DH4 CAE H5 SING N N 16 DH4 CAE H6 SING N N 17 DH4 CAF H7 SING N N 18 DH4 CAF H8 SING N N 19 DH4 CAG H9 SING N N 20 DH4 CAG H10 SING N N 21 DH4 CAH H11 SING N N 22 DH4 CAH H12 SING N N 23 DH4 CAI H13 SING N N 24 DH4 CAI H14 SING N N 25 DH4 CAJ H15 SING N N 26 DH4 CAJ H16 SING N N 27 DH4 CA C6 SING N N 28 DH4 C6 N1 SING N N 29 DH4 N1 C3 SING N N 30 DH4 C3 C4 SING N N 31 DH4 C4 S1 SING N N 32 DH4 S1 C6 SING N N 33 DH4 N1 H3 SING N N 34 DH4 C3 H18 SING N N 35 DH4 C6 H24 SING N N 36 DH4 C4 C1 SING N N 37 DH4 C4 C2 SING N N 38 DH4 C1 H17 SING N N 39 DH4 C1 H20 SING N N 40 DH4 C1 H21 SING N N 41 DH4 C2 H22 SING N N 42 DH4 C2 H23 SING N N 43 DH4 C2 H25 SING N N 44 DH4 C3 C5 SING N N 45 DH4 C5 O1 SING N N 46 DH4 C5 O2 DOUB N N 47 DH4 O1 H26 SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DH4 SMILES ACDLabs 12.01 "O=C(O)C1NC(SC1(C)C)C(/N=C/N2CCCCCC2)C=O" DH4 InChI InChI 1.03 "InChI=1S/C15H25N3O3S/c1-15(2)12(14(20)21)17-13(22-15)11(9-19)16-10-18-7-5-3-4-6-8-18/h9-13,17H,3-8H2,1-2H3,(H,20,21)/b16-10+/t11-,12?,13?/m1/s1" DH4 InChIKey InChI 1.03 GIESTXBEHWEDNC-XRSRENSCSA-N DH4 SMILES_CANONICAL CACTVS 3.370 "CC1(C)SC(NC1C(O)=O)[C@@H](C=O)N=CN2CCCCCC2" DH4 SMILES CACTVS 3.370 "CC1(C)SC(NC1C(O)=O)[CH](C=O)N=CN2CCCCCC2" DH4 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1(C(NC(S1)[C@H](C=O)/N=C/N2CCCCCC2)C(=O)O)C" DH4 SMILES "OpenEye OEToolkits" 1.7.6 "CC1(C(NC(S1)C(C=O)N=CN2CCCCCC2)C(=O)O)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DH4 "SYSTEMATIC NAME" ACDLabs 12.01 "2-[(1R)-1-{[(E)-azepan-1-ylmethylidene]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid" DH4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[(1S)-1-[(E)-azepan-1-ylmethylideneamino]-2-oxidanylidene-ethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DH4 "Create component" 2010-06-25 RCSB DH4 "Modify descriptor" 2011-06-04 RCSB DH4 "Other modification" 2012-05-09 RCSB DH4 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id DH4 _pdbx_chem_comp_synonyms.name "Mecillinam, bound form" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##