data_DISEP # _chem_comp.id DISEP _chem_comp.name DIPHOSPHOSERINE _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C3 H9 N O9 P2" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms "2-azanyl-3-[oxidanyl(phosphonooxy)phosphoryl]oxy-propanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-22 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 265.052 _chem_comp.one_letter_code S _chem_comp.three_letter_code DISEP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DISEP N N N 0 1 N N N Y Y N -3.392 0.114 0.783 3.097 1.956 0.196 N DISEP 1 DISEP CA CA C 0 1 N N S N Y N -2.490 0.577 -0.273 3.227 0.536 0.551 CA DISEP 2 DISEP CB CB C 0 1 N N N N N N -1.027 0.341 0.101 2.144 -0.271 -0.167 CB DISEP 3 DISEP OG OG O 0 1 N N N N N N -0.159 1.070 -0.777 0.858 0.123 0.316 OG DISEP 4 DISEP P1 P1 P 0 1 N N N N N N 1.405 1.090 -0.554 -0.516 -0.523 -0.220 P1 DISEP 5 DISEP O2 O2 O 0 1 N N N N N N 1.670 1.569 0.864 -0.569 -2.081 0.181 O2 DISEP 6 DISEP O3 O3 O 0 1 N N N N N N 2.172 1.815 -1.590 -0.581 -0.390 -1.693 O3 DISEP 7 DISEP O4 O4 O 0 1 N N N N N N 1.821 -0.445 -0.566 -1.765 0.246 0.444 O4 DISEP 8 DISEP P2 P2 P 0 1 N N N N N N 2.959 -1.263 0.208 -3.341 0.309 0.118 P2 DISEP 9 DISEP O5 O5 O 0 1 N N N N N N 2.202 -2.339 1.028 -4.065 -1.000 0.713 O5 DISEP 10 DISEP O6 O6 O 0 1 N N N N N N 3.776 -1.978 -0.898 -3.975 1.627 0.791 O6 DISEP 11 DISEP O7 O7 O 0 1 N N N N N N 3.761 -0.322 1.041 -3.540 0.359 -1.348 O7 DISEP 12 DISEP C C C 0 1 N N N N Y Y -2.800 -0.073 -1.615 4.586 0.037 0.132 C DISEP 13 DISEP OXT OXT O 0 1 N Y N N Y Y -2.852 -1.383 -1.547 5.093 -1.075 0.688 OXT DISEP 14 DISEP O O O 0 1 N N N N Y Y -2.977 0.563 -2.630 5.219 0.637 -0.704 O DISEP 15 DISEP H H H 0 1 N N N Y Y N -4.339 0.281 0.510 3.199 2.090 -0.799 H DISEP 16 DISEP H2 H2 H 0 1 N Y N Y Y N -3.256 -0.866 0.931 2.220 2.331 0.524 H2 DISEP 17 DISEP HA HA H 0 1 N N N N Y N -2.628 1.662 -0.392 3.114 0.419 1.629 HA DISEP 18 DISEP HB2 HB2 H 0 1 N N N N N N -0.859 0.676 1.135 2.202 -0.084 -1.239 HB2 DISEP 19 DISEP HB3 HB3 H 0 1 N N N N N N -0.802 -0.733 0.022 2.295 -1.333 0.026 HB3 DISEP 20 DISEP H6 H6 H 0 1 N N N N N N 2.304 2.276 0.847 -0.531 -2.243 1.133 H6 DISEP 21 DISEP H7 H7 H 0 1 N N N N N N 2.380 -2.216 1.953 -3.975 -1.097 1.671 H7 DISEP 22 DISEP H8 H8 H 0 1 N N N N N N 4.680 -1.689 -0.861 -4.924 1.730 0.635 H8 DISEP 23 DISEP HXT HXT H 0 1 N Y N N Y Y -3.047 -1.738 -2.406 5.968 -1.356 0.388 HXT DISEP 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DISEP N CA SING N N 1 DISEP CA CB SING N N 2 DISEP CB OG SING N N 3 DISEP OG P1 SING N N 4 DISEP P1 O2 SING N N 5 DISEP P1 O3 DOUB N N 6 DISEP P1 O4 SING N N 7 DISEP O4 P2 SING N N 8 DISEP P2 O5 SING N N 9 DISEP P2 O6 SING N N 10 DISEP P2 O7 DOUB N N 11 DISEP CA C SING N N 12 DISEP C OXT SING N N 13 DISEP C O DOUB N N 14 DISEP N H SING N N 15 DISEP N H2 SING N N 16 DISEP CA HA SING N N 17 DISEP CB HB2 SING N N 18 DISEP CB HB3 SING N N 19 DISEP O2 H6 SING N N 20 DISEP O5 H7 SING N N 21 DISEP O6 H8 SING N N 22 DISEP OXT HXT SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DISEP InChI InChI 1.06 "InChI=1S/C3H9NO9P2/c4-2(3(5)6)1-12-15(10,11)13-14(7,8)9/h2H,1,4H2,(H,5,6)(H,10,11)(H2,7,8,9)/t2-/m0/s1" DISEP InChIKey InChI 1.06 APDGJFZXPJDQMS-REOHCLBHSA-N DISEP SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CO[P](O)(=O)O[P](O)(O)=O)C(O)=O" DISEP SMILES CACTVS 3.385 "N[CH](CO[P](O)(=O)O[P](O)(O)=O)C(O)=O" DISEP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(C(C(=O)O)N)OP(=O)(O)OP(=O)(O)O" DISEP SMILES "OpenEye OEToolkits" 2.0.7 "C(C(C(=O)O)N)OP(=O)(O)OP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id DISEP _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-azanyl-3-[oxidanyl(phosphonooxy)phosphoryl]oxy-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DISEP "Create component" 2024-02-14 PDBE DISEP "Modify descriptor" 2024-02-14 PDBE DISEP "Other modification" 2024-02-14 PDBE DISEP "Modify PCM" 2024-09-27 PDBE DISEP "Initial release" 2025-06-11 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id DISEP _pdbx_chem_comp_synonyms.name "2-azanyl-3-[oxidanyl(phosphonooxy)phosphoryl]oxy-propanoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id DISEP _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type Diphosphorylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession PTM-0697 _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #