data_DJ5
#
_chem_comp.id DJ5
_chem_comp.name "N~3~-{(2R)-4-[(dihydroxyphosphanyl)oxy]-2-hydroxy-3,3-dimethylbutanoyl}-N-(2-{[(9Z)-hexadec-9-enoyl]amino}ethyl)-beta-alaninamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H52 N3 O8 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-11-30
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 577.691
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code DJ5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7SZ9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DJ5 O23 O1 O 0 1 N N N N N N 7.171 5.664 4.968 -11.710 -1.972 2.299 O23 DJ5 1
DJ5 P24 P1 P 0 1 N N N N N N 7.103 6.109 6.410 -10.510 -2.417 1.323 P24 DJ5 2
DJ5 O25 O2 O 0 1 N N N N N N 7.766 5.098 7.316 -10.834 -3.866 0.700 O25 DJ5 3
DJ5 O27 O3 O 0 1 N N N N N N 7.759 7.614 6.597 -10.359 -1.343 0.133 O27 DJ5 4
DJ5 C28 C1 C 0 1 N N N N N N 7.361 8.410 7.679 -9.968 0.014 0.354 C28 DJ5 5
DJ5 C29 C2 C 0 1 N N N N N N 8.593 8.725 8.528 -9.924 0.756 -0.983 C29 DJ5 6
DJ5 C30 C3 C 0 1 N N N N N N 8.150 9.324 9.860 -8.912 0.078 -1.909 C30 DJ5 7
DJ5 C31 C4 C 0 1 N N N N N N 9.330 7.411 8.788 -11.310 0.723 -1.630 C31 DJ5 8
DJ5 C32 C5 C 0 1 N N R N N N 9.479 9.723 7.769 -9.506 2.208 -0.746 C32 DJ5 9
DJ5 O33 O4 O 0 1 N N N N N N 8.686 10.804 7.358 -10.501 2.869 0.039 O33 DJ5 10
DJ5 C34 C6 C 0 1 N N N N N N 10.644 10.264 8.608 -8.188 2.239 -0.016 C34 DJ5 11
DJ5 O35 O5 O 0 1 N N N N N N 11.367 9.546 9.214 -8.145 2.593 1.144 O35 DJ5 12
DJ5 N36 N1 N 0 1 N N N N N N 10.900 11.690 8.661 -7.057 1.874 -0.651 N36 DJ5 13
DJ5 C37 C7 C 0 1 N N N N N N 12.014 12.170 9.459 -5.793 1.799 0.087 C37 DJ5 14
DJ5 C38 C8 C 0 1 N N N N N N 13.126 12.707 8.563 -4.674 1.364 -0.861 C38 DJ5 15
DJ5 C39 C9 C 0 1 N N N N N N 13.274 14.216 8.724 -3.374 1.287 -0.102 C39 DJ5 16
DJ5 O40 O6 O 0 1 N N N N N N 12.489 14.939 8.207 -3.346 1.554 1.081 O40 DJ5 17
DJ5 N41 N2 N 0 1 N N N N N N 14.366 14.760 9.511 -2.243 0.922 -0.737 N41 DJ5 18
DJ5 C42 C10 C 0 1 N N N N N N 14.505 16.195 9.669 -0.980 0.848 0.001 C42 DJ5 19
DJ5 C43 C11 C 0 1 N N N N N N 13.434 16.719 10.623 0.140 0.412 -0.947 C43 DJ5 20
DJ5 C1 C12 C 0 1 N N N N N N 9.692 14.350 24.005 15.176 0.802 0.937 C1 DJ5 21
DJ5 C10 C13 C 0 1 N N N N N N 12.612 16.351 20.619 12.252 -2.072 -1.551 C10 DJ5 22
DJ5 C11 C14 C 0 1 N N N N N N 12.038 15.386 21.308 13.348 -1.359 -1.642 C11 DJ5 23
DJ5 C12 C15 C 0 1 N N N N N N 10.814 15.689 22.170 13.578 -0.208 -0.697 C12 DJ5 24
DJ5 C13 C16 C 0 1 N N N N N N 10.029 14.426 22.519 14.942 -0.367 -0.023 C13 DJ5 25
DJ5 C14 C17 C 0 1 N N N N N N 9.392 12.921 24.449 16.540 0.643 1.611 C14 DJ5 26
DJ5 C15 C18 C 0 1 N N N N N N 8.696 12.878 25.806 16.774 1.812 2.570 C15 DJ5 27
DJ5 C16 C19 C 0 1 N N N N N N 8.735 11.490 26.440 18.138 1.653 3.245 C16 DJ5 28
DJ5 C2 C20 C 0 1 N N N N N N 13.093 17.312 13.029 2.534 -0.028 -0.845 C2 DJ5 29
DJ5 C3 C21 C 0 1 N N N N N N 13.599 17.357 14.466 3.833 -0.104 -0.086 C3 DJ5 30
DJ5 C4 C22 C 0 1 N N N N N N 13.363 16.045 15.210 4.953 -0.539 -1.033 C4 DJ5 31
DJ5 C5 C23 C 0 1 N N N N N N 12.162 16.148 16.147 6.272 -0.617 -0.263 C5 DJ5 32
DJ5 C6 C24 C 0 1 N N N N N N 12.287 17.346 17.084 7.392 -1.052 -1.211 C6 DJ5 33
DJ5 C7 C25 C 0 1 N N N N N N 11.372 17.243 18.300 8.711 -1.130 -0.440 C7 DJ5 34
DJ5 C8 C26 C 0 1 N N N N N N 11.678 18.334 19.322 9.830 -1.565 -1.388 C8 DJ5 35
DJ5 C9 C27 C 0 1 N N N N N N 12.046 17.767 20.691 11.150 -1.643 -0.617 C9 DJ5 36
DJ5 N1 N3 N 0 1 N N N N N N 13.928 16.752 11.985 1.403 0.338 -0.209 N1 DJ5 37
DJ5 O14 O7 O 0 1 N N N N N N 12.020 17.738 12.767 2.506 -0.295 -2.027 O14 DJ5 38
DJ5 H1 H1 H 0 1 N N N N N N 6.291 5.584 4.619 -12.570 -1.908 1.861 H1 DJ5 39
DJ5 H2 H2 H 0 1 N N N N N N 7.135 4.780 7.951 -10.938 -4.564 1.361 H2 DJ5 40
DJ5 H3 H3 H 0 1 N N N N N N 6.917 9.345 7.308 -10.689 0.496 1.014 H3 DJ5 41
DJ5 H4 H4 H 0 1 N N N N N N 6.621 7.868 8.286 -8.981 0.037 0.816 H4 DJ5 42
DJ5 H5 H5 H 0 1 N N N N N N 9.035 9.552 10.473 -9.254 -0.929 -2.145 H5 DJ5 43
DJ5 H6 H6 H 0 1 N N N N N N 7.584 10.249 9.676 -8.818 0.656 -2.829 H6 DJ5 44
DJ5 H7 H7 H 0 1 N N N N N N 7.511 8.603 10.392 -7.943 0.026 -1.412 H7 DJ5 45
DJ5 H8 H8 H 0 1 N N N N N N 10.224 7.606 9.399 -12.046 1.123 -0.933 H8 DJ5 46
DJ5 H9 H9 H 0 1 N N N N N N 8.665 6.717 9.323 -11.301 1.329 -2.537 H9 DJ5 47
DJ5 H10 H10 H 0 1 N N N N N N 9.631 6.964 7.829 -11.568 -0.305 -1.883 H10 DJ5 48
DJ5 H11 H11 H 0 1 N N N N N N 9.898 9.210 6.891 -9.402 2.718 -1.704 H11 DJ5 49
DJ5 H12 H12 H 0 1 N N N N N N 9.223 11.430 6.886 -10.646 2.468 0.908 H12 DJ5 50
DJ5 H13 H13 H 0 1 N N N N N N 10.320 12.331 8.158 -7.079 1.660 -1.597 H13 DJ5 51
DJ5 H14 H14 H 0 1 N N N N N N 12.407 11.341 10.066 -5.557 2.779 0.503 H14 DJ5 52
DJ5 H15 H15 H 0 1 N N N N N N 11.663 12.975 10.122 -5.887 1.074 0.895 H15 DJ5 53
DJ5 H16 H16 H 0 1 N N N N N N 12.885 12.479 7.514 -4.910 0.385 -1.277 H16 DJ5 54
DJ5 H17 H17 H 0 1 N N N N N N 14.074 12.221 8.836 -4.580 2.089 -1.669 H17 DJ5 55
DJ5 H18 H18 H 0 1 N N N N N N 15.024 14.144 9.945 -2.266 0.709 -1.683 H18 DJ5 56
DJ5 H19 H19 H 0 1 N N N N N N 15.501 16.422 10.078 -0.744 1.827 0.417 H19 DJ5 57
DJ5 H20 H20 H 0 1 N N N N N N 14.391 16.683 8.690 -1.074 0.123 0.809 H20 DJ5 58
DJ5 H21 H21 H 0 1 N N N N N N 13.147 17.736 10.319 -0.097 -0.567 -1.363 H21 DJ5 59
DJ5 H22 H22 H 0 1 N N N N N N 12.555 16.060 10.574 0.233 1.137 -1.756 H22 DJ5 60
DJ5 H23 H23 H 0 1 N N N N N N 10.547 14.730 24.583 15.153 1.739 0.380 H23 DJ5 61
DJ5 H24 H24 H 0 1 N N N N N N 8.809 14.976 24.202 14.394 0.811 1.696 H24 DJ5 62
DJ5 H25 H25 H 0 1 N N N N N N 13.477 16.142 20.007 12.140 -2.967 -2.145 H25 DJ5 63
DJ5 H26 H26 H 0 1 N N N N N N 12.432 14.382 21.263 14.086 -1.597 -2.394 H26 DJ5 64
DJ5 H27 H27 H 0 1 N N N N N N 11.147 16.168 23.102 13.555 0.729 -1.253 H27 DJ5 65
DJ5 H28 H28 H 0 1 N N N N N N 10.154 16.376 21.620 12.796 -0.199 0.062 H28 DJ5 66
DJ5 H29 H29 H 0 1 N N N N N N 9.092 14.420 21.942 15.724 -0.376 -0.782 H29 DJ5 67
DJ5 H30 H30 H 0 1 N N N N N N 10.632 13.547 22.247 14.966 -1.304 0.534 H30 DJ5 68
DJ5 H31 H31 H 0 1 N N N N N N 8.741 12.446 23.701 16.564 -0.294 2.168 H31 DJ5 69
DJ5 H32 H32 H 0 1 N N N N N N 10.338 12.364 24.518 17.322 0.634 0.852 H32 DJ5 70
DJ5 H33 H33 H 0 1 N N N N N N 9.196 13.588 26.481 16.751 2.749 2.014 H33 DJ5 71
DJ5 H34 H34 H 0 1 N N N N N N 7.645 13.176 25.673 15.992 1.821 3.330 H34 DJ5 72
DJ5 H35 H35 H 0 1 N N N N N N 8.221 11.516 27.412 18.162 0.716 3.801 H35 DJ5 73
DJ5 H36 H36 H 0 1 N N N N N N 8.231 10.770 25.778 18.920 1.644 2.485 H36 DJ5 74
DJ5 H37 H37 H 0 1 N N N N N N 9.781 11.183 26.586 18.305 2.486 3.928 H37 DJ5 75
DJ5 H38 H38 H 0 1 N N N N N N 14.679 17.566 14.453 4.070 0.875 0.330 H38 DJ5 76
DJ5 H39 H39 H 0 1 N N N N N N 13.075 18.164 14.999 3.740 -0.829 0.723 H39 DJ5 77
DJ5 H40 H40 H 0 1 N N N N N N 13.179 15.246 14.477 4.717 -1.519 -1.449 H40 DJ5 78
DJ5 H41 H41 H 0 1 N N N N N N 14.259 15.802 15.801 5.047 0.186 -1.842 H41 DJ5 79
DJ5 H42 H42 H 0 1 N N N N N N 11.248 16.258 15.546 6.509 0.362 0.153 H42 DJ5 80
DJ5 H43 H43 H 0 1 N N N N N N 12.097 15.229 16.748 6.179 -1.342 0.546 H43 DJ5 81
DJ5 H44 H44 H 0 1 N N N N N N 13.328 17.413 17.432 7.155 -2.032 -1.627 H44 DJ5 82
DJ5 H45 H45 H 0 1 N N N N N N 12.028 18.258 16.525 7.485 -0.327 -2.019 H45 DJ5 83
DJ5 H46 H46 H 0 1 N N N N N N 10.327 17.344 17.971 8.947 -0.151 -0.024 H46 DJ5 84
DJ5 H47 H47 H 0 1 N N N N N N 11.514 16.260 18.773 8.617 -1.855 0.369 H47 DJ5 85
DJ5 H48 H48 H 0 1 N N N N N N 12.520 18.937 18.952 9.594 -2.545 -1.804 H48 DJ5 86
DJ5 H49 H49 H 0 1 N N N N N N 10.790 18.973 19.432 9.924 -0.840 -2.196 H49 DJ5 87
DJ5 H50 H50 H 0 1 N N N N N N 12.800 18.423 21.151 11.056 -2.368 0.191 H50 DJ5 88
DJ5 H51 H51 H 0 1 N N N N N N 11.142 17.752 21.318 11.386 -0.664 -0.201 H51 DJ5 89
DJ5 H52 H52 H 0 1 N N N N N N 14.835 16.392 12.202 1.425 0.551 0.737 H52 DJ5 90
DJ5 O1 O8 O 0 1 N N N N N N 5.565 6.289 6.841 -9.247 -2.482 2.092 O1 DJ5 91
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DJ5 O23 P24 SING N N 1
DJ5 P24 O27 SING N N 2
DJ5 P24 O25 SING N N 3
DJ5 O27 C28 SING N N 4
DJ5 O33 C32 SING N N 5
DJ5 C28 C29 SING N N 6
DJ5 C32 C29 SING N N 7
DJ5 C32 C34 SING N N 8
DJ5 O40 C39 DOUB N N 9
DJ5 C29 C31 SING N N 10
DJ5 C29 C30 SING N N 11
DJ5 C38 C39 SING N N 12
DJ5 C38 C37 SING N N 13
DJ5 C34 N36 SING N N 14
DJ5 C34 O35 DOUB N N 15
DJ5 N36 C37 SING N N 16
DJ5 C39 N41 SING N N 17
DJ5 N41 C42 SING N N 18
DJ5 C42 C43 SING N N 19
DJ5 C43 N1 SING N N 20
DJ5 N1 C2 SING N N 21
DJ5 O14 C2 DOUB N N 22
DJ5 C2 C3 SING N N 23
DJ5 C3 C4 SING N N 24
DJ5 C4 C5 SING N N 25
DJ5 C5 C6 SING N N 26
DJ5 C6 C7 SING N N 27
DJ5 C7 C8 SING N N 28
DJ5 C8 C9 SING N N 29
DJ5 C10 C9 SING N N 30
DJ5 C10 C11 DOUB N Z 31
DJ5 C11 C12 SING N N 32
DJ5 C12 C13 SING N N 33
DJ5 C13 C1 SING N N 34
DJ5 C1 C14 SING N N 35
DJ5 C14 C15 SING N N 36
DJ5 C15 C16 SING N N 37
DJ5 O23 H1 SING N N 38
DJ5 O25 H2 SING N N 39
DJ5 C28 H3 SING N N 40
DJ5 C28 H4 SING N N 41
DJ5 C30 H5 SING N N 42
DJ5 C30 H6 SING N N 43
DJ5 C30 H7 SING N N 44
DJ5 C31 H8 SING N N 45
DJ5 C31 H9 SING N N 46
DJ5 C31 H10 SING N N 47
DJ5 C32 H11 SING N N 48
DJ5 O33 H12 SING N N 49
DJ5 N36 H13 SING N N 50
DJ5 C37 H14 SING N N 51
DJ5 C37 H15 SING N N 52
DJ5 C38 H16 SING N N 53
DJ5 C38 H17 SING N N 54
DJ5 N41 H18 SING N N 55
DJ5 C42 H19 SING N N 56
DJ5 C42 H20 SING N N 57
DJ5 C43 H21 SING N N 58
DJ5 C43 H22 SING N N 59
DJ5 C1 H23 SING N N 60
DJ5 C1 H24 SING N N 61
DJ5 C10 H25 SING N N 62
DJ5 C11 H26 SING N N 63
DJ5 C12 H27 SING N N 64
DJ5 C12 H28 SING N N 65
DJ5 C13 H29 SING N N 66
DJ5 C13 H30 SING N N 67
DJ5 C14 H31 SING N N 68
DJ5 C14 H32 SING N N 69
DJ5 C15 H33 SING N N 70
DJ5 C15 H34 SING N N 71
DJ5 C16 H35 SING N N 72
DJ5 C16 H36 SING N N 73
DJ5 C16 H37 SING N N 74
DJ5 C3 H38 SING N N 75
DJ5 C3 H39 SING N N 76
DJ5 C4 H40 SING N N 77
DJ5 C4 H41 SING N N 78
DJ5 C5 H42 SING N N 79
DJ5 C5 H43 SING N N 80
DJ5 C6 H44 SING N N 81
DJ5 C6 H45 SING N N 82
DJ5 C7 H46 SING N N 83
DJ5 C7 H47 SING N N 84
DJ5 C8 H48 SING N N 85
DJ5 C8 H49 SING N N 86
DJ5 C9 H50 SING N N 87
DJ5 C9 H51 SING N N 88
DJ5 N1 H52 SING N N 89
DJ5 P24 O1 DOUB N N 90
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DJ5 SMILES ACDLabs 12.01 "O=P(O)(O)OCC(C)(C)C(O)C(=O)NCCC(=O)NCCNC(=O)CCCCCCC/C=C\CCCCCC"
DJ5 InChI InChI 1.03 "InChI=1S/C27H52N3O8P/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-23(31)28-20-21-29-24(32)18-19-30-26(34)25(33)27(2,3)22-38-39(35,36)37/h9-10,25,33H,4-8,11-22H2,1-3H3,(H,28,31)(H,29,32)(H,30,34)(H2,35,36,37)/b10-9-/t25-/m0/s1"
DJ5 InChIKey InChI 1.03 GXMQTIIOLQTNTK-JRUKXMRZSA-N
DJ5 SMILES_CANONICAL CACTVS 3.385 "CCCCCC\C=C/CCCCCCCC(=O)NCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(O)=O"
DJ5 SMILES CACTVS 3.385 "CCCCCCC=CCCCCCCCC(=O)NCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O"
DJ5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCC/C=C\CCCCCCCC(=O)NCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)O)O"
DJ5 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCC=CCCCCCCCC(=O)NCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DJ5 "SYSTEMATIC NAME" ACDLabs 12.01 "N-(2-{[(9Z)-hexadec-9-enoyl]amino}ethyl)-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide"
DJ5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{R})-4-[[3-[2-[[(~{Z})-hexadec-9-enoyl]amino]ethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DJ5 "Create component" 2021-11-30 RCSB
DJ5 "Initial release" 2022-11-23 RCSB
DJ5 "Modify PCM" 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 DJ5 CYS None Crosslinker "Amino-acid side chain" "Any position" C3 SG ? ?
2 DJ5 SER None Crosslinker "Amino-acid side chain" "Any position" P24 OG ? ?
#