data_DJN # _chem_comp.id DJN _chem_comp.name "N-[(3S,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)piperidin-3-yl]acetamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H16 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-acetamido-1,2-dideoxy-D-galacto-nojirimycin; DGJNAc" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-02-14 _chem_comp.pdbx_modified_date 2020-05-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 204.224 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DJN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4DO4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DJN O7 O7 O 0 1 N N N 58.030 -1.930 18.092 -2.939 -1.040 1.212 O7 DJN 1 DJN C7 C7 C 0 1 N N N 57.324 -2.552 18.888 -3.159 -0.543 0.128 C7 DJN 2 DJN C8 C8 C 0 1 N N N 56.413 -1.871 19.895 -4.556 -0.553 -0.436 C8 DJN 3 DJN N2 N2 N 0 1 N N N 57.322 -3.888 18.896 -2.155 0.023 -0.571 N2 DJN 4 DJN C2 C2 C 0 1 N N S 58.261 -4.680 18.114 -0.797 0.037 -0.020 C2 DJN 5 DJN C3 C3 C 0 1 N N R 57.644 -5.576 17.075 -0.011 1.201 -0.629 C3 DJN 6 DJN O3 O3 O 0 1 N N N 56.737 -4.876 16.214 -0.632 2.437 -0.270 O3 DJN 7 DJN C4 C4 C 0 1 N N S 58.791 -6.190 16.272 1.424 1.174 -0.095 C4 DJN 8 DJN O4 O4 O 0 1 N N N 59.502 -5.149 15.595 1.408 1.354 1.323 O4 DJN 9 DJN C5 C5 C 0 1 N N R 59.734 -6.934 17.211 2.062 -0.176 -0.431 C5 DJN 10 DJN C6 C6 C 0 1 N N N 60.963 -7.448 16.434 3.490 -0.216 0.119 C6 DJN 11 DJN O6 O6 O 0 1 N N N 61.869 -8.103 17.341 4.126 -1.427 -0.294 O6 DJN 12 DJN N5 N5 N 0 1 N N N 60.193 -6.203 18.397 1.274 -1.257 0.175 N5 DJN 13 DJN C1 C1 C 0 1 N N N 59.068 -5.552 19.082 -0.094 -1.279 -0.359 C1 DJN 14 DJN H1 H1 H 0 1 N N N 56.497 -0.780 19.787 -5.228 -1.045 0.267 H1 DJN 15 DJN H2 H2 H 0 1 N N N 55.372 -2.178 19.714 -4.889 0.472 -0.599 H2 DJN 16 DJN H3 H3 H 0 1 N N N 56.710 -2.162 20.913 -4.563 -1.092 -1.383 H3 DJN 17 DJN H4 H4 H 0 1 N N N 56.648 -4.363 19.462 -2.330 0.420 -1.438 H4 DJN 18 DJN H5 H5 H 0 1 N N N 58.963 -4.000 17.608 -0.844 0.156 1.062 H5 DJN 19 DJN H6 H6 H 0 1 N N N 57.109 -6.389 17.588 0.003 1.103 -1.715 H6 DJN 20 DJN H7 H7 H 0 1 N N N 56.033 -4.503 16.731 -0.185 3.219 -0.623 H7 DJN 21 DJN H8 H8 H 0 1 N N N 58.375 -6.903 15.544 2.000 1.974 -0.558 H8 DJN 22 DJN H9 H9 H 0 1 N N N 60.216 -5.526 15.095 1.013 2.189 1.609 H9 DJN 23 DJN H10 H10 H 0 1 N N N 59.192 -7.824 17.563 2.086 -0.306 -1.513 H10 DJN 24 DJN H11 H11 H 0 1 N N N 60.637 -8.162 15.664 4.050 0.638 -0.263 H11 DJN 25 DJN H12 H12 H 0 1 N N N 61.474 -6.600 15.955 3.461 -0.174 1.208 H12 DJN 26 DJN H13 H13 H 0 1 N N N 62.625 -8.419 16.861 5.036 -1.520 0.019 H13 DJN 27 DJN H14 H14 H 0 1 N N N 60.633 -6.844 19.026 1.727 -2.149 0.047 H14 DJN 28 DJN H16 H16 H 0 1 N N N 59.459 -4.921 19.894 -0.643 -2.109 0.086 H16 DJN 29 DJN H17 H17 H 0 1 N N N 58.409 -6.325 19.504 -0.060 -1.405 -1.441 H17 DJN 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DJN O4 C4 SING N N 1 DJN O3 C3 SING N N 2 DJN C4 C3 SING N N 3 DJN C4 C5 SING N N 4 DJN C6 C5 SING N N 5 DJN C6 O6 SING N N 6 DJN C3 C2 SING N N 7 DJN C5 N5 SING N N 8 DJN O7 C7 DOUB N N 9 DJN C2 N2 SING N N 10 DJN C2 C1 SING N N 11 DJN N5 C1 SING N N 12 DJN C7 N2 SING N N 13 DJN C7 C8 SING N N 14 DJN C8 H1 SING N N 15 DJN C8 H2 SING N N 16 DJN C8 H3 SING N N 17 DJN N2 H4 SING N N 18 DJN C2 H5 SING N N 19 DJN C3 H6 SING N N 20 DJN O3 H7 SING N N 21 DJN C4 H8 SING N N 22 DJN O4 H9 SING N N 23 DJN C5 H10 SING N N 24 DJN C6 H11 SING N N 25 DJN C6 H12 SING N N 26 DJN O6 H13 SING N N 27 DJN N5 H14 SING N N 28 DJN C1 H16 SING N N 29 DJN C1 H17 SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DJN SMILES ACDLabs 12.01 "O=C(NC1C(O)C(O)C(NC1)CO)C" DJN InChI InChI 1.03 "InChI=1S/C8H16N2O4/c1-4(12)10-5-2-9-6(3-11)8(14)7(5)13/h5-9,11,13-14H,2-3H2,1H3,(H,10,12)/t5-,6+,7+,8-/m0/s1" DJN InChIKey InChI 1.03 GBRAQQUMMCVTAV-OSMVPFSASA-N DJN SMILES_CANONICAL CACTVS 3.370 "CC(=O)N[C@H]1CN[C@H](CO)[C@H](O)[C@@H]1O" DJN SMILES CACTVS 3.370 "CC(=O)N[CH]1CN[CH](CO)[CH](O)[CH]1O" DJN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(=O)N[C@H]1CN[C@@H]([C@@H]([C@@H]1O)O)CO" DJN SMILES "OpenEye OEToolkits" 1.7.6 "CC(=O)NC1CNC(C(C1O)O)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DJN "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(3S,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)piperidin-3-yl]acetamide" DJN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[(3S,4R,5S,6R)-6-(hydroxymethyl)-4,5-bis(oxidanyl)piperidin-3-yl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DJN "Create component" 2012-02-14 RCSB DJN "Initial release" 2012-10-05 RCSB DJN "Modify synonyms" 2020-05-27 PDBE # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 DJN 2-acetamido-1,2-dideoxy-D-galacto-nojirimycin ? ? 2 DJN DGJNAc ? ? #