data_DK3 # _chem_comp.id DK3 _chem_comp.name "methyl (3S)-3-hydroxydodecanoate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H26 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-11-05 _chem_comp.pdbx_modified_date 2012-04-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 230.344 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DK3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3F20 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DK3 C12 C12 C 0 1 N N N -31.537 -0.269 12.039 8.736 -0.230 -0.051 C12 DK3 1 DK3 C13 C13 C 0 1 N N N -36.070 -6.219 1.032 -7.368 0.043 -0.409 C13 DK3 2 DK3 C11 C11 C 0 1 N N N -30.812 -0.386 10.706 7.441 0.557 -0.266 C11 DK3 3 DK3 O3 O3 O 0 1 N N N -38.863 -4.647 6.107 -2.621 1.135 0.980 O3 DK3 4 DK3 C3 C3 C 0 1 N N S -37.933 -4.032 5.199 -2.537 0.083 0.017 C3 DK3 5 DK3 C2 C2 C 0 1 N N N -37.147 -5.154 4.496 -3.736 -0.854 0.181 C2 DK3 6 DK3 C1 C1 C 0 1 N N N -37.111 -4.832 3.035 -5.004 -0.110 -0.151 C1 DK3 7 DK3 O1 O1 O 0 1 N N N -37.020 -5.976 2.092 -6.189 -0.736 -0.076 O1 DK3 8 DK3 O2 O2 O 0 1 N N N -37.232 -3.656 2.718 -4.954 1.051 -0.483 O2 DK3 9 DK3 C4 C4 C 0 1 N N N -37.069 -2.952 5.911 -1.243 -0.704 0.232 C4 DK3 10 DK3 C5 C5 C 0 1 N N N -35.561 -3.204 6.017 -0.043 0.201 -0.054 C5 DK3 11 DK3 C6 C6 C 0 1 N N N -35.017 -2.772 7.379 1.252 -0.586 0.161 C6 DK3 12 DK3 C7 C7 C 0 1 N N N -33.624 -3.357 7.653 2.452 0.320 -0.124 C7 DK3 13 DK3 C8 C8 C 0 1 N N N -33.100 -3.010 9.058 3.746 -0.467 0.090 C8 DK3 14 DK3 C9 C9 C 0 1 N N N -32.451 -1.618 9.176 4.946 0.438 -0.195 C9 DK3 15 DK3 C10 C10 C 0 1 N N N -31.125 -1.678 9.943 6.241 -0.348 0.020 C10 DK3 16 DK3 H12 H12 H 0 1 N N N -30.801 -0.241 12.856 8.757 -1.085 -0.726 H12 DK3 17 DK3 H12A H12A H 0 0 N N N -32.134 0.655 12.052 9.591 0.415 -0.255 H12A DK3 18 DK3 H12B H12B H 0 0 N N N -32.200 -1.137 12.173 8.782 -0.580 0.980 H12B DK3 19 DK3 H13 H13 H 0 1 N N N -36.601 -6.281 0.070 -8.256 -0.581 -0.309 H13 DK3 20 DK3 H13A H13A H 0 0 N N N -35.342 -5.395 0.997 -7.444 0.895 0.266 H13A DK3 21 DK3 H13B H13B H 0 0 N N N -35.544 -7.166 1.222 -7.290 0.400 -1.436 H13B DK3 22 DK3 H11 H11 H 0 1 N N N -31.116 0.464 10.077 7.420 1.412 0.409 H11 DK3 23 DK3 H11A H11A H 0 0 N N N -29.734 -0.393 10.924 7.395 0.907 -1.297 H11A DK3 24 DK3 HO3 HO3 H 0 1 N N N -38.443 -4.783 6.948 -2.621 0.830 1.898 HO3 DK3 25 DK3 H3 H3 H 0 1 N N N -38.452 -3.460 4.416 -2.543 0.507 -0.987 H3 DK3 26 DK3 H2 H2 H 0 1 N N N -36.124 -5.208 4.897 -3.628 -1.704 -0.493 H2 DK3 27 DK3 H2A H2A H 0 1 N N N -37.630 -6.128 4.665 -3.782 -1.209 1.210 H2A DK3 28 DK3 H4 H4 H 0 1 N N N -37.197 -2.018 5.345 -1.197 -1.054 1.263 H4 DK3 29 DK3 H4A H4A H 0 1 N N N -37.428 -2.941 6.951 -1.221 -1.559 -0.443 H4A DK3 30 DK3 H5 H5 H 0 1 N N N -35.371 -4.279 5.883 -0.089 0.551 -1.085 H5 DK3 31 DK3 H5A H5A H 0 1 N N N -35.055 -2.614 5.238 -0.064 1.057 0.622 H5A DK3 32 DK3 H6 H6 H 0 1 N N N -34.947 -1.674 7.398 1.298 -0.935 1.192 H6 DK3 33 DK3 H6A H6A H 0 1 N N N -35.702 -3.145 8.154 1.273 -1.441 -0.514 H6A DK3 34 DK3 H7 H7 H 0 1 N N N -33.684 -4.452 7.565 2.406 0.670 -1.156 H7 DK3 35 DK3 H7A H7A H 0 1 N N N -32.929 -2.922 6.920 2.430 1.175 0.551 H7A DK3 36 DK3 H8 H8 H 0 1 N N N -33.953 -3.043 9.752 3.792 -0.817 1.122 H8 DK3 37 DK3 H8A H8A H 0 1 N N N -32.314 -3.744 9.290 3.768 -1.322 -0.585 H8A DK3 38 DK3 H9 H9 H 0 1 N N N -32.258 -1.230 8.165 4.901 0.788 -1.226 H9 DK3 39 DK3 H9A H9A H 0 1 N N N -33.140 -0.961 9.727 4.925 1.294 0.480 H9A DK3 40 DK3 H10 H10 H 0 1 N N N -30.316 -1.856 9.219 6.263 -1.204 -0.656 H10 DK3 41 DK3 H10A H10A H 0 0 N N N -31.209 -2.486 10.684 6.287 -0.698 1.051 H10A DK3 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DK3 C11 C12 SING N N 1 DK3 C12 H12 SING N N 2 DK3 C12 H12A SING N N 3 DK3 C12 H12B SING N N 4 DK3 C13 O1 SING N N 5 DK3 C13 H13 SING N N 6 DK3 C13 H13A SING N N 7 DK3 C13 H13B SING N N 8 DK3 C10 C11 SING N N 9 DK3 C11 H11 SING N N 10 DK3 C11 H11A SING N N 11 DK3 C3 O3 SING N N 12 DK3 O3 HO3 SING N N 13 DK3 C2 C3 SING N N 14 DK3 C3 C4 SING N N 15 DK3 C3 H3 SING N N 16 DK3 C1 C2 SING N N 17 DK3 C2 H2 SING N N 18 DK3 C2 H2A SING N N 19 DK3 O1 C1 SING N N 20 DK3 O2 C1 DOUB N N 21 DK3 C4 C5 SING N N 22 DK3 C4 H4 SING N N 23 DK3 C4 H4A SING N N 24 DK3 C5 C6 SING N N 25 DK3 C5 H5 SING N N 26 DK3 C5 H5A SING N N 27 DK3 C6 C7 SING N N 28 DK3 C6 H6 SING N N 29 DK3 C6 H6A SING N N 30 DK3 C7 C8 SING N N 31 DK3 C7 H7 SING N N 32 DK3 C7 H7A SING N N 33 DK3 C8 C9 SING N N 34 DK3 C8 H8 SING N N 35 DK3 C8 H8A SING N N 36 DK3 C9 C10 SING N N 37 DK3 C9 H9 SING N N 38 DK3 C9 H9A SING N N 39 DK3 C10 H10 SING N N 40 DK3 C10 H10A SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DK3 SMILES ACDLabs 10.04 "O=C(OC)CC(O)CCCCCCCCC" DK3 SMILES_CANONICAL CACTVS 3.341 "CCCCCCCCC[C@H](O)CC(=O)OC" DK3 SMILES CACTVS 3.341 "CCCCCCCCC[CH](O)CC(=O)OC" DK3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCCCCC[C@@H](CC(=O)OC)O" DK3 SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCC(CC(=O)OC)O" DK3 InChI InChI 1.03 "InChI=1S/C13H26O3/c1-3-4-5-6-7-8-9-10-12(14)11-13(15)16-2/h12,14H,3-11H2,1-2H3/t12-/m0/s1" DK3 InChIKey InChI 1.03 OZXCINYANGIBDB-LBPRGKRZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DK3 "SYSTEMATIC NAME" ACDLabs 10.04 "methyl (3S)-3-hydroxydodecanoate" DK3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "methyl (3S)-3-hydroxydodecanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DK3 "Create component" 2008-11-05 RCSB DK3 "Modify descriptor" 2011-06-04 RCSB #