data_DM0 # _chem_comp.id DM0 _chem_comp.name N~2~,N~2~,N~6~,N~6~-tetramethyl-L-lysine _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C10 H22 N2 O2" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-03-25 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 202.294 _chem_comp.one_letter_code K _chem_comp.three_letter_code DM0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 132L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DM0 OXT OXT O 0 1 N Y N Y N Y -8.277 15.485 47.810 -2.697 -2.242 -0.849 OXT DM0 1 DM0 N N N 0 1 N N N Y Y N -9.649 18.097 49.778 -2.294 1.168 0.425 N DM0 2 DM0 CA CA C 0 1 N N S Y N N -8.887 17.726 48.556 -2.137 0.152 -0.625 CA DM0 3 DM0 CB CB C 0 1 N N N N N N -7.960 18.833 48.055 -0.715 0.214 -1.187 CB DM0 4 DM0 CG CG C 0 1 N N N N N N -7.182 18.316 46.859 0.291 0.009 -0.053 CG DM0 5 DM0 CD CD C 0 1 N N N N N N -6.452 19.360 46.027 1.707 -0.032 -0.629 CD DM0 6 DM0 CE CE C 0 1 N N N N N N -5.602 18.751 44.900 2.714 -0.237 0.505 CE DM0 7 DM0 NZ NZ N 0 1 N N N N N N -5.025 19.729 43.942 4.074 -0.277 -0.048 NZ DM0 8 DM0 CH1 CH1 C 0 1 N N N N N N -3.831 20.358 44.516 4.449 1.025 -0.617 CH1 DM0 9 DM0 CH2 CH2 C 0 1 N N N N N N -6.071 20.253 43.059 5.043 -0.707 0.968 CH2 DM0 10 DM0 C C C 0 1 N N N Y N Y -8.095 16.434 48.729 -2.387 -1.215 -0.042 C DM0 11 DM0 O O O 0 1 N N N Y N Y -7.335 16.282 49.666 -2.309 -1.387 1.152 O DM0 12 DM0 CM1 CM1 C 0 1 N N N N N N -10.688 17.051 50.137 -1.906 2.497 -0.067 CM1 DM0 13 DM0 CM2 CM2 C 0 1 N N N N N N -10.258 19.415 49.535 -3.668 1.179 0.945 CM2 DM0 14 DM0 HA HA H 0 1 N N N Y N N -9.660 17.566 47.790 -2.853 0.342 -1.424 HA DM0 15 DM0 HB HB H 0 1 N N N N N N -8.555 19.709 47.759 -0.586 -0.568 -1.934 HB DM0 16 DM0 HBA HBA H 0 1 N N N N N N -7.264 19.127 48.854 -0.549 1.188 -1.648 HBA DM0 17 DM0 HG HG H 0 1 N N N N N N -6.425 17.615 47.240 0.211 0.832 0.657 HG DM0 18 DM0 HGA HGA H 0 1 N N N N N N -7.931 17.871 46.187 0.078 -0.931 0.456 HGA DM0 19 DM0 HD HD H 0 1 N N N N N N -7.202 20.024 45.572 1.787 -0.855 -1.339 HD DM0 20 DM0 HDA HDA H 0 1 N N N N N N -5.768 19.898 46.700 1.920 0.908 -1.138 HDA DM0 21 DM0 HE HE H 0 1 N N N N N N -4.766 18.212 45.369 2.634 0.586 1.215 HE DM0 22 DM0 HEA HEA H 0 1 N N N N N N -6.279 18.110 44.316 2.501 -1.178 1.014 HEA DM0 23 DM0 HH1 HH1 H 0 1 N N N N N N -3.083 20.515 43.725 4.411 1.786 0.162 HH1 DM0 24 DM0 HH1A HH1A H 0 0 N N N N N N -4.104 21.327 44.960 5.460 0.967 -1.019 HH1A DM0 25 DM0 HH1B HH1B H 0 0 N N N N N N -3.410 19.704 45.294 3.754 1.286 -1.415 HH1B DM0 26 DM0 HH2 HH2 H 0 1 N N N N N N -7.002 20.384 43.630 4.781 -1.704 1.322 HH2 DM0 27 DM0 HH2A HH2A H 0 0 N N N N N N -5.753 21.223 42.649 6.042 -0.727 0.532 HH2A DM0 28 DM0 HH2B HH2B H 0 0 N N N N N N -6.243 19.545 42.235 5.027 -0.008 1.805 HH2B DM0 29 DM0 HM1 HM1 H 0 1 N N N N N N -10.939 16.461 49.243 -2.536 2.769 -0.914 HM1 DM0 30 DM0 HM1A HM1A H 0 0 N N N N N N -10.284 16.385 50.914 -2.032 3.230 0.730 HM1A DM0 31 DM0 HM1B HM1B H 0 0 N N N N N N -11.594 17.549 50.514 -0.863 2.477 -0.382 HM1B DM0 32 DM0 HM2 HM2 H 0 1 N N N N N N -10.410 19.932 50.494 -3.870 0.238 1.456 HM2 DM0 33 DM0 HM2A HM2A H 0 0 N N N N N N -9.592 20.015 48.897 -3.783 2.006 1.646 HM2A DM0 34 DM0 HM2B HM2B H 0 0 N N N N N N -11.227 19.284 49.032 -4.368 1.303 0.119 HM2B DM0 35 DM0 HXT HXT H 0 1 N Y N Y N Y -7.737 14.732 48.021 -2.849 -3.100 -0.428 HXT DM0 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DM0 OXT C SING N N 1 DM0 N CA SING N N 2 DM0 N CM1 SING N N 3 DM0 N CM2 SING N N 4 DM0 CA CB SING N N 5 DM0 CA C SING N N 6 DM0 CB CG SING N N 7 DM0 CG CD SING N N 8 DM0 CD CE SING N N 9 DM0 CE NZ SING N N 10 DM0 NZ CH1 SING N N 11 DM0 NZ CH2 SING N N 12 DM0 C O DOUB N N 13 DM0 CA HA SING N N 14 DM0 CB HB SING N N 15 DM0 CB HBA SING N N 16 DM0 CG HG SING N N 17 DM0 CG HGA SING N N 18 DM0 CD HD SING N N 19 DM0 CD HDA SING N N 20 DM0 CE HE SING N N 21 DM0 CE HEA SING N N 22 DM0 CH1 HH1 SING N N 23 DM0 CH1 HH1A SING N N 24 DM0 CH1 HH1B SING N N 25 DM0 CH2 HH2 SING N N 26 DM0 CH2 HH2A SING N N 27 DM0 CH2 HH2B SING N N 28 DM0 CM1 HM1 SING N N 29 DM0 CM1 HM1A SING N N 30 DM0 CM1 HM1B SING N N 31 DM0 CM2 HM2 SING N N 32 DM0 CM2 HM2A SING N N 33 DM0 CM2 HM2B SING N N 34 DM0 HXT OXT SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DM0 SMILES ACDLabs 10.04 "O=C(O)C(N(C)C)CCCCN(C)C" DM0 SMILES_CANONICAL CACTVS 3.341 "CN(C)CCCC[C@H](N(C)C)C(O)=O" DM0 SMILES CACTVS 3.341 "CN(C)CCCC[CH](N(C)C)C(O)=O" DM0 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CN(C)CCCC[C@@H](C(=O)O)N(C)C" DM0 SMILES "OpenEye OEToolkits" 1.5.0 "CN(C)CCCCC(C(=O)O)N(C)C" DM0 InChI InChI 1.03 "InChI=1S/C10H22N2O2/c1-11(2)8-6-5-7-9(10(13)14)12(3)4/h9H,5-8H2,1-4H3,(H,13,14)/t9-/m0/s1" DM0 InChIKey InChI 1.03 HNWHSCYWLXEVJP-VIFPVBQESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DM0 "SYSTEMATIC NAME" ACDLabs 10.04 N~2~,N~2~,N~6~,N~6~-tetramethyl-L-lysine DM0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2,6-bis(dimethylamino)hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DM0 "Create component" 2008-03-25 RCSB DM0 "Modify descriptor" 2011-06-04 RCSB DM0 "Modify backbone" 2023-11-03 PDBE DM0 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id DM0 _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type Methylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position N-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #