data_DM4 # _chem_comp.id DM4 _chem_comp.name 1-O-DEMETHYL-6-DEOXYDOXORUBICIN _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAD _chem_comp.formula "C26 H27 N O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 513.493 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DM4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1D37 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DM4 C1 C1 C 0 1 Y N N 15.214 18.399 4.953 -6.320 0.365 -0.892 C1 DM4 1 DM4 C2 C2 C 0 1 Y N N 16.392 19.219 4.905 -7.190 -0.689 -0.664 C2 DM4 2 DM4 C3 C3 C 0 1 Y N N 17.711 18.630 4.841 -6.762 -1.823 -0.005 C3 DM4 3 DM4 C4 C4 C 0 1 Y N N 17.846 17.187 4.820 -5.447 -1.924 0.441 C4 DM4 4 DM4 O4 O4 O 0 1 N N N 19.007 16.547 4.846 -5.031 -3.041 1.089 O4 DM4 5 DM4 C5 C5 C 0 1 Y N N 16.649 16.451 4.868 -4.558 -0.870 0.218 C5 DM4 6 DM4 C6 C6 C 0 1 N N N 16.730 14.969 4.868 -3.160 -0.955 0.680 C6 DM4 7 DM4 O6 O6 O 0 1 N N N 17.762 14.276 4.799 -2.824 -1.817 1.470 O6 DM4 8 DM4 C7 C7 C 0 1 Y N N 15.488 14.186 4.921 -2.172 0.017 0.173 C7 DM4 9 DM4 C8 C8 C 0 1 Y N N 15.547 12.819 4.894 -0.806 -0.191 0.353 C8 DM4 10 DM4 O8 O8 O 0 1 N N N 16.683 12.179 4.830 -0.372 -1.299 1.002 O8 DM4 11 DM4 C9 C9 C 0 1 Y N N 14.335 12.126 4.921 0.120 0.739 -0.137 C9 DM4 12 DM4 C10 C10 C 0 1 N N S 14.389 10.548 4.862 1.580 0.451 0.098 C10 DM4 13 DM4 O10 O10 O 0 1 N N N 15.127 10.353 6.079 1.832 -0.935 -0.141 O10 DM4 14 DM4 C11 C11 C 0 1 N N N 13.132 9.838 4.809 2.450 1.290 -0.836 C11 DM4 15 DM4 C12 C12 C 0 1 N N S 11.903 10.514 5.357 2.013 2.754 -0.717 C12 DM4 16 DM4 O12 O12 O 0 1 N N N 11.979 10.537 6.834 2.945 3.592 -1.403 O12 DM4 17 DM4 C13 C13 C 0 1 N N N 10.635 9.781 4.969 1.949 3.149 0.736 C13 DM4 18 DM4 O13 O13 O 0 1 N N N 9.860 10.396 4.150 0.909 3.058 1.342 O13 DM4 19 DM4 C14 C14 C 0 1 N N N 9.821 8.722 5.787 3.185 3.657 1.433 C14 DM4 20 DM4 O14 O14 O 0 1 N N N 8.885 7.513 5.532 2.873 3.963 2.794 O14 DM4 21 DM4 C15 C15 C 0 1 N N N 11.802 12.078 4.963 0.630 2.896 -1.350 C15 DM4 22 DM4 C16 C16 C 0 1 Y N N 13.090 12.723 4.915 -0.317 1.863 -0.796 C16 DM4 23 DM4 C17 C17 C 0 1 Y N N 13.081 14.079 4.931 -1.682 2.083 -0.976 C17 DM4 24 DM4 C18 C18 C 0 1 Y N N 14.194 14.893 4.953 -2.613 1.174 -0.500 C18 DM4 25 DM4 C19 C19 C 0 1 N N N 14.166 16.327 4.995 -4.062 1.401 -0.691 C19 DM4 26 DM4 O19 O19 O 0 1 N N N 13.138 17.026 5.000 -4.473 2.491 -1.037 O19 DM4 27 DM4 C20 C20 C 0 1 Y N N 15.389 17.052 4.947 -5.003 0.285 -0.455 C20 DM4 28 DM4 "C1'" C1* C 0 1 N N R 15.978 9.297 6.377 2.791 -1.354 0.831 "C1'" DM4 29 DM4 "C2'" C2* C 0 1 N N N 17.069 9.688 7.344 2.841 -2.883 0.869 "C2'" DM4 30 DM4 "C3'" C3* C 0 1 N N S 16.432 10.145 8.678 3.216 -3.405 -0.523 "C3'" DM4 31 DM4 "N3'" N3* N 0 1 N N N 17.565 10.390 9.682 3.416 -4.859 -0.467 "N3'" DM4 32 DM4 "C4'" C4* C 0 1 N N S 15.485 9.032 9.214 4.513 -2.721 -0.969 "C4'" DM4 33 DM4 "O4'" O4* O 0 1 N N N 16.401 7.935 9.438 5.588 -3.137 -0.125 "O4'" DM4 34 DM4 "C5'" C5* C 0 1 N N S 14.397 8.716 8.189 4.336 -1.204 -0.869 "C5'" DM4 35 DM4 "O5'" O5* O 0 1 N N N 15.110 8.212 6.919 4.075 -0.837 0.485 "O5'" DM4 36 DM4 "C6'" C6* C 0 1 N N N 13.439 7.513 8.540 5.614 -0.510 -1.346 "C6'" DM4 37 DM4 H1 H1 H 0 1 N N N 14.227 18.836 4.992 -6.665 1.249 -1.408 H1 DM4 38 DM4 H2 H2 H 0 1 N N N 16.291 20.294 4.917 -8.213 -0.622 -1.006 H2 DM4 39 DM4 H3 H3 H 0 1 N N N 18.588 19.260 4.809 -7.451 -2.637 0.166 H3 DM4 40 DM4 HO4 HO4 H 0 1 N N N 19.305 16.394 3.957 -4.700 -3.649 0.414 HO4 DM4 41 DM4 HO8 HO8 H 0 1 N N N 16.909 12.024 3.920 -0.327 -2.008 0.346 HO8 DM4 42 DM4 H10 H10 H 0 1 N N N 14.817 10.141 3.934 1.831 0.689 1.132 H10 DM4 43 DM4 H111 1H11 H 0 0 N N N 13.281 8.965 5.462 3.497 1.194 -0.548 H111 DM4 44 DM4 H112 2H11 H 0 0 N N N 12.931 9.634 3.747 2.319 0.950 -1.864 H112 DM4 45 DM4 HO12 2HO1 H 0 0 N N N 12.890 10.542 7.105 2.630 4.501 -1.302 HO12 DM4 46 DM4 H141 1H14 H 0 0 N N N 8.995 9.414 6.009 3.961 2.892 1.402 H141 DM4 47 DM4 H142 2H14 H 0 0 N N N 10.631 8.235 6.349 3.542 4.556 0.931 H142 DM4 48 DM4 HO14 4HO1 H 0 0 N N N 8.694 7.450 4.604 3.688 4.283 3.202 HO14 DM4 49 DM4 H151 1H15 H 0 0 N N N 11.205 12.580 5.739 0.239 3.892 -1.140 H151 DM4 50 DM4 H152 2H15 H 0 0 N N N 11.337 12.157 3.969 0.714 2.765 -2.429 H152 DM4 51 DM4 H17 H17 H 0 1 N N N 12.116 14.565 4.926 -2.016 2.971 -1.493 H17 DM4 52 DM4 "H1'" H1* H 0 1 N N N 16.516 8.964 5.477 2.502 -0.977 1.812 "H1'" DM4 53 DM4 "H2'1" 1H2* H 0 0 N N N 17.661 10.511 6.918 3.589 -3.206 1.593 "H2'1" DM4 54 DM4 "H2'2" 2H2* H 0 0 N N N 17.725 8.824 7.527 1.863 -3.273 1.153 "H2'2" DM4 55 DM4 "H3'" H3* H 0 1 N N N 15.846 11.064 8.530 2.417 -3.172 -1.228 "H3'" DM4 56 DM4 "HN'1" 1HN* H 0 0 N N N 17.401 11.249 10.166 2.543 -5.260 -0.158 "HN'1" DM4 57 DM4 "HN'2" 2HN* H 0 0 N N N 18.437 10.443 9.195 3.557 -5.169 -1.417 "HN'2" DM4 58 DM4 "H4'" H4* H 0 1 N N N 14.925 9.296 10.123 4.733 -2.993 -2.001 "H4'" DM4 59 DM4 "HO4'" *HO4 H 0 0 N N N 16.602 7.515 8.610 6.382 -2.685 -0.440 "HO4'" DM4 60 DM4 "H5'" H5* H 0 1 N N N 13.804 9.639 8.116 3.500 -0.894 -1.496 "H5'" DM4 61 DM4 "H6'1" 1H6* H 0 0 N N N 12.503 7.903 8.966 6.451 -0.819 -0.719 "H6'1" DM4 62 DM4 "H6'2" 2H6* H 0 0 N N N 13.930 6.855 9.272 5.813 -0.788 -2.381 "H6'2" DM4 63 DM4 "H6'3" 3H6* H 0 0 N N N 13.216 6.943 7.626 5.488 0.570 -1.277 "H6'3" DM4 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DM4 C1 C2 DOUB Y N 1 DM4 C1 C20 SING Y N 2 DM4 C1 H1 SING N N 3 DM4 C2 C3 SING Y N 4 DM4 C2 H2 SING N N 5 DM4 C3 C4 DOUB Y N 6 DM4 C3 H3 SING N N 7 DM4 C4 O4 SING N N 8 DM4 C4 C5 SING Y N 9 DM4 O4 HO4 SING N N 10 DM4 C5 C6 SING N N 11 DM4 C5 C20 DOUB Y N 12 DM4 C6 O6 DOUB N N 13 DM4 C6 C7 SING N N 14 DM4 C7 C8 DOUB Y N 15 DM4 C7 C18 SING Y N 16 DM4 C8 O8 SING N N 17 DM4 C8 C9 SING Y N 18 DM4 O8 HO8 SING N N 19 DM4 C9 C10 SING N N 20 DM4 C9 C16 DOUB Y N 21 DM4 C10 O10 SING N N 22 DM4 C10 C11 SING N N 23 DM4 C10 H10 SING N N 24 DM4 O10 "C1'" SING N N 25 DM4 C11 C12 SING N N 26 DM4 C11 H111 SING N N 27 DM4 C11 H112 SING N N 28 DM4 C12 O12 SING N N 29 DM4 C12 C13 SING N N 30 DM4 C12 C15 SING N N 31 DM4 O12 HO12 SING N N 32 DM4 C13 O13 DOUB N N 33 DM4 C13 C14 SING N N 34 DM4 C14 O14 SING N N 35 DM4 C14 H141 SING N N 36 DM4 C14 H142 SING N N 37 DM4 O14 HO14 SING N N 38 DM4 C15 C16 SING N N 39 DM4 C15 H151 SING N N 40 DM4 C15 H152 SING N N 41 DM4 C16 C17 SING Y N 42 DM4 C17 C18 DOUB Y N 43 DM4 C17 H17 SING N N 44 DM4 C18 C19 SING N N 45 DM4 C19 O19 DOUB N N 46 DM4 C19 C20 SING N N 47 DM4 "C1'" "C2'" SING N N 48 DM4 "C1'" "O5'" SING N N 49 DM4 "C1'" "H1'" SING N N 50 DM4 "C2'" "C3'" SING N N 51 DM4 "C2'" "H2'1" SING N N 52 DM4 "C2'" "H2'2" SING N N 53 DM4 "C3'" "N3'" SING N N 54 DM4 "C3'" "C4'" SING N N 55 DM4 "C3'" "H3'" SING N N 56 DM4 "N3'" "HN'1" SING N N 57 DM4 "N3'" "HN'2" SING N N 58 DM4 "C4'" "O4'" SING N N 59 DM4 "C4'" "C5'" SING N N 60 DM4 "C4'" "H4'" SING N N 61 DM4 "O4'" "HO4'" SING N N 62 DM4 "C5'" "O5'" SING N N 63 DM4 "C5'" "C6'" SING N N 64 DM4 "C5'" "H5'" SING N N 65 DM4 "C6'" "H6'1" SING N N 66 DM4 "C6'" "H6'2" SING N N 67 DM4 "C6'" "H6'3" SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DM4 SMILES ACDLabs 10.04 "O=C2c1cc5c(c(O)c1C(=O)c3c2cccc3O)C(OC4OC(C(O)C(N)C4)C)CC(O)(C(=O)CO)C5" DM4 SMILES_CANONICAL CACTVS 3.341 "C[C@@H]1O[C@H](C[C@H](N)[C@@H]1O)O[C@H]2C[C@@](O)(Cc3cc4C(=O)c5cccc(O)c5C(=O)c4c(O)c23)C(=O)CO" DM4 SMILES CACTVS 3.341 "C[CH]1O[CH](C[CH](N)[CH]1O)O[CH]2C[C](O)(Cc3cc4C(=O)c5cccc(O)c5C(=O)c4c(O)c23)C(=O)CO" DM4 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H]1[C@H]([C@H](C[C@@H](O1)O[C@H]2C[C@@](Cc3c2c(c4c(c3)C(=O)c5cccc(c5C4=O)O)O)(C(=O)CO)O)N)O" DM4 SMILES "OpenEye OEToolkits" 1.5.0 "CC1C(C(CC(O1)OC2CC(Cc3c2c(c4c(c3)C(=O)c5cccc(c5C4=O)O)O)(C(=O)CO)O)N)O" DM4 InChI InChI 1.03 "InChI=1S/C26H27NO10/c1-10-22(31)14(27)6-18(36-10)37-16-8-26(35,17(30)9-28)7-11-5-13-21(24(33)19(11)16)25(34)20-12(23(13)32)3-2-4-15(20)29/h2-5,10,14,16,18,22,28-29,31,33,35H,6-9,27H2,1H3/t10-,14-,16-,18-,22+,26-/m0/s1" DM4 InChIKey InChI 1.03 ROILTUODAPUWLG-NRFWZUBKSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DM4 "SYSTEMATIC NAME" ACDLabs 10.04 "(1S,3S)-3,10,12-trihydroxy-3-(hydroxyacetyl)-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-L-lyxo-hexopyranoside" DM4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(7S,9S)-7-[(2R,4S,5S,6S)-4-amino-5-hydroxy-6-methyl-oxan-2-yl]oxy-4,6,9-trihydroxy-9-(2-hydroxyethanoyl)-8,10-dihydro-7H-tetracene-5,12-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DM4 "Create component" 1999-07-08 RCSB DM4 "Modify descriptor" 2011-06-04 RCSB #