data_DMJ # _chem_comp.id DMJ _chem_comp.name 1-DEOXYMANNOJIRIMYCIN _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H13 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-09-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces DDM _chem_comp.formula_weight 163.172 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DMJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1FO2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DMJ C4 C4 C 0 1 N N R 39.009 40.268 25.513 0.919 0.209 -0.104 C4 DMJ 1 DMJ O4 O4 O 0 1 N N N 39.217 40.581 26.898 2.291 -0.075 0.174 O4 DMJ 2 DMJ C3 C3 C 0 1 N N R 37.824 39.190 25.527 0.495 -0.518 -1.383 C3 DMJ 3 DMJ O3 O3 O 0 1 N N N 37.451 38.710 24.240 1.229 -0.003 -2.496 O3 DMJ 4 DMJ C2 C2 C 0 1 N N R 36.533 39.807 26.231 -1.003 -0.293 -1.609 C2 DMJ 5 DMJ O2 O2 O 0 1 N N N 35.478 38.859 26.221 -1.248 1.094 -1.842 O2 DMJ 6 DMJ C1 C1 C 0 1 N N N 36.111 41.142 25.488 -1.772 -0.747 -0.366 C1 DMJ 7 DMJ N5 N5 N 0 1 N N N 37.272 42.018 25.583 -1.355 0.049 0.792 N5 DMJ 8 DMJ C5 C5 C 0 1 N N R 38.593 41.640 24.847 0.050 -0.270 1.059 C5 DMJ 9 DMJ C6 C6 C 0 1 N N N 38.369 41.545 23.307 0.495 0.425 2.347 C6 DMJ 10 DMJ O6 O6 O 0 1 N N N 38.177 42.367 22.146 -0.313 -0.025 3.435 O6 DMJ 11 DMJ H4 H4 H 0 1 N N N 39.877 39.849 24.953 0.790 1.283 -0.237 H4 DMJ 12 DMJ HO4 HO4 H 0 1 N N N 39.919 41.220 26.889 2.802 0.238 -0.583 HO4 DMJ 13 DMJ H3 H3 H 0 1 N N N 38.224 38.318 26.095 0.692 -1.585 -1.279 H3 DMJ 14 DMJ HO3 HO3 H 0 1 N N N 36.748 38.070 24.248 0.924 -0.482 -3.278 HO3 DMJ 15 DMJ H2 H2 H 0 1 N N N 36.765 40.053 27.293 -1.332 -0.872 -2.472 H2 DMJ 16 DMJ HO2 HO2 H 0 1 N N N 34.708 39.226 26.640 -2.201 1.191 -1.975 HO2 DMJ 17 DMJ H11 1H1 H 0 1 N N N 35.752 40.981 24.444 -1.565 -1.800 -0.176 H11 DMJ 18 DMJ H12 2H1 H 0 1 N N N 35.171 41.596 25.879 -2.841 -0.613 -0.533 H12 DMJ 19 DMJ HN5 HN5 H 0 1 N N N 37.483 42.168 26.569 -1.885 -0.289 1.582 HN5 DMJ 20 DMJ H5 H5 H 0 1 N N N 39.400 42.401 24.951 0.161 -1.349 1.173 H5 DMJ 21 DMJ H61 1H6 H 0 1 N N N 39.241 40.924 22.995 0.384 1.503 2.234 H61 DMJ 22 DMJ H62 2H6 H 0 1 N N N 37.476 40.879 23.255 1.539 0.186 2.547 H62 DMJ 23 DMJ HO6 HO6 H 0 1 N N N 38.040 42.309 21.207 -0.001 0.436 4.225 HO6 DMJ 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DMJ C4 O4 SING N N 1 DMJ C4 C3 SING N N 2 DMJ C4 C5 SING N N 3 DMJ C4 H4 SING N N 4 DMJ O4 HO4 SING N N 5 DMJ C3 O3 SING N N 6 DMJ C3 C2 SING N N 7 DMJ C3 H3 SING N N 8 DMJ O3 HO3 SING N N 9 DMJ C2 O2 SING N N 10 DMJ C2 C1 SING N N 11 DMJ C2 H2 SING N N 12 DMJ O2 HO2 SING N N 13 DMJ C1 N5 SING N N 14 DMJ C1 H11 SING N N 15 DMJ C1 H12 SING N N 16 DMJ N5 C5 SING N N 17 DMJ N5 HN5 SING N N 18 DMJ C5 C6 SING N N 19 DMJ C5 H5 SING N N 20 DMJ C6 O6 SING N N 21 DMJ C6 H61 SING N N 22 DMJ C6 H62 SING N N 23 DMJ O6 HO6 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DMJ SMILES ACDLabs 10.04 "OC1C(NCC(O)C1O)CO" DMJ SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1NC[C@@H](O)[C@@H](O)[C@@H]1O" DMJ SMILES CACTVS 3.341 "OC[CH]1NC[CH](O)[CH](O)[CH]1O" DMJ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@H]([C@H]([C@@H]([C@H](N1)CO)O)O)O" DMJ SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(C(C(N1)CO)O)O)O" DMJ InChI InChI 1.03 "InChI=1S/C6H13NO4/c8-2-3-5(10)6(11)4(9)1-7-3/h3-11H,1-2H2/t3-,4-,5-,6-/m1/s1" DMJ InChIKey InChI 1.03 LXBIFEVIBLOUGU-KVTDHHQDSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DMJ "SYSTEMATIC NAME" ACDLabs 10.04 "(2R,3R,4R,5R)-2-(hydroxymethyl)piperidine-3,4,5-triol" DMJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4R,5R)-2-(hydroxymethyl)piperidine-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DMJ "Create component" 2000-09-08 RCSB DMJ "Modify descriptor" 2011-06-04 RCSB #