data_DMP # _chem_comp.id DMP _chem_comp.name ;[4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-[1,3-BIS([4-HYDROXYMETHYL-PHENYL]METHYL)-4,7-BIS(PHEN YLMETHYL)]-2H-1,3-DIAZEPINONE ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H38 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "DMP323(INHIBITOR OF DUPONT MERCK)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 566.687 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DMP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1MEU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DMP C1 C1 C 0 1 N N N -8.948 15.311 27.921 1.608 -0.249 -0.275 C1 DMP 1 DMP C3 C3 C 0 1 N N R -8.676 17.656 27.224 0.005 1.410 0.580 C3 DMP 2 DMP C4 C4 C 0 1 N N S -10.064 18.243 27.245 -0.540 1.647 -0.835 C4 DMP 3 DMP C5 C5 C 0 1 N N S -10.708 17.973 28.582 -1.279 0.429 -1.369 C5 DMP 4 DMP C6 C6 C 0 1 N N R -10.975 16.499 28.789 -0.700 -0.861 -0.814 C6 DMP 5 DMP C20 C20 C 0 1 N N N -7.870 15.692 25.838 2.359 1.254 1.423 C20 DMP 6 DMP C21 C21 C 0 1 Y N N -8.401 16.021 24.478 2.375 0.431 2.685 C21 DMP 7 DMP C22 C22 C 0 1 Y N N -9.773 16.128 24.159 3.035 -0.783 2.710 C22 DMP 8 DMP C23 C23 C 0 1 Y N N -10.173 16.456 22.843 3.049 -1.538 3.868 C23 DMP 9 DMP C24 C24 C 0 1 Y N N -9.195 16.640 21.846 2.405 -1.078 5.001 C24 DMP 10 DMP C25 C25 C 0 1 Y N N -7.823 16.529 22.178 1.740 0.134 4.974 C25 DMP 11 DMP C26 C26 C 0 1 Y N N -7.435 16.203 23.482 1.729 0.890 3.817 C26 DMP 12 DMP C27 C27 C 0 1 N N N -9.597 17.002 20.432 2.421 -1.900 6.263 C27 DMP 13 DMP C30 C30 C 0 1 N N N -7.743 18.042 28.395 -0.972 0.523 1.352 C30 DMP 14 DMP C31 C31 C 0 1 Y N N -6.354 18.311 27.895 -1.705 1.353 2.375 C31 DMP 15 DMP C32 C32 C 0 1 Y N N -5.437 17.262 27.665 -2.769 2.145 1.987 C32 DMP 16 DMP C33 C33 C 0 1 Y N N -4.179 17.551 27.096 -3.441 2.907 2.925 C33 DMP 17 DMP C34 C34 C 0 1 Y N N -3.842 18.882 26.759 -3.049 2.876 4.250 C34 DMP 18 DMP C35 C35 C 0 1 Y N N -4.754 19.934 27.001 -1.985 2.083 4.638 C35 DMP 19 DMP C36 C36 C 0 1 Y N N -6.014 19.642 27.560 -1.316 1.318 3.701 C36 DMP 20 DMP C60 C60 C 0 1 N N N -12.006 15.831 27.872 -1.374 -2.051 -1.500 C60 DMP 21 DMP C61 C61 C 0 1 Y N N -12.711 14.672 28.548 -2.842 -2.062 -1.160 C61 DMP 22 DMP C62 C62 C 0 1 Y N N -13.804 14.940 29.411 -3.756 -1.489 -2.024 C62 DMP 23 DMP C63 C63 C 0 1 Y N N -14.464 13.873 30.059 -5.102 -1.499 -1.712 C63 DMP 24 DMP C64 C64 C 0 1 Y N N -14.035 12.543 29.841 -5.535 -2.082 -0.536 C64 DMP 25 DMP C65 C65 C 0 1 Y N N -12.941 12.276 28.984 -4.621 -2.656 0.327 C65 DMP 26 DMP C66 C66 C 0 1 Y N N -12.289 13.339 28.324 -3.275 -2.650 0.013 C66 DMP 27 DMP C70 C70 C 0 1 N N N -9.787 14.733 30.052 1.254 -1.746 -2.150 C70 DMP 28 DMP C71 C71 C 0 1 Y N N -9.878 15.374 31.394 1.471 -0.877 -3.362 C71 DMP 29 DMP C72 C72 C 0 1 Y N N -10.703 14.696 32.309 2.691 -0.259 -3.561 C72 DMP 30 DMP C73 C73 C 0 1 Y N N -10.734 15.109 33.642 2.890 0.537 -4.673 C73 DMP 31 DMP C74 C74 C 0 1 Y N N -9.959 16.217 34.061 1.868 0.715 -5.587 C74 DMP 32 DMP C75 C75 C 0 1 Y N N -9.139 16.914 33.129 0.648 0.095 -5.389 C75 DMP 33 DMP C76 C76 C 0 1 Y N N -9.108 16.500 31.776 0.451 -0.704 -4.279 C76 DMP 34 DMP C77 C77 C 0 1 N N N -9.976 16.614 35.521 2.084 1.584 -6.799 C77 DMP 35 DMP N2 N2 N 0 1 N N N -8.581 16.207 27.007 1.310 0.758 0.529 N2 DMP 36 DMP N7 N7 N 0 1 N N N -9.839 15.584 28.889 0.742 -0.928 -1.048 N7 DMP 37 DMP O1 O1 O 0 1 N N N -8.432 14.208 27.878 2.771 -0.599 -0.313 O1 DMP 38 DMP O4 O4 O 0 1 N N N -9.880 19.618 27.030 -1.434 2.761 -0.808 O4 DMP 39 DMP O5 O5 O 0 1 N N N -11.958 18.605 28.668 -1.177 0.410 -2.794 O5 DMP 40 DMP O27 O27 O 0 1 N N N -8.689 17.953 19.846 3.615 -1.623 6.998 O27 DMP 41 DMP O77 O77 O 0 1 N N N -11.282 16.513 36.097 2.585 0.786 -7.874 O77 DMP 42 DMP H3 H3 H 0 1 N N N -8.303 18.168 26.306 0.102 2.368 1.092 H3 DMP 43 DMP H4 H4 H 0 1 N N N -10.735 17.801 26.472 0.291 1.877 -1.501 H4 DMP 44 DMP H5 H5 H 0 1 N N N -9.995 18.357 29.348 -2.329 0.499 -1.088 H5 DMP 45 DMP H6 H6 H 0 1 N N N -11.405 16.631 29.809 -0.892 -0.909 0.257 H6 DMP 46 DMP H201 1H20 H 0 0 N N N -7.773 14.585 25.931 2.162 2.297 1.671 H201 DMP 47 DMP H202 2H20 H 0 0 N N N -6.801 16.006 25.895 3.327 1.176 0.926 H202 DMP 48 DMP H22 H22 H 0 1 N N N -10.533 15.955 24.939 3.539 -1.142 1.825 H22 DMP 49 DMP H23 H23 H 0 1 N N N -11.242 16.567 22.595 3.565 -2.486 3.888 H23 DMP 50 DMP H25 H25 H 0 1 N N N -7.047 16.698 21.412 1.236 0.492 5.859 H25 DMP 51 DMP H26 H26 H 0 1 N N N -6.365 16.089 23.725 1.213 1.839 3.798 H26 DMP 52 DMP H271 1H27 H 0 0 N N N -9.701 16.093 19.794 2.389 -2.959 6.007 H271 DMP 53 DMP H272 2H27 H 0 0 N N N -10.649 17.366 20.389 1.553 -1.648 6.873 H272 DMP 54 DMP H301 1H30 H 0 0 N N N -8.146 18.901 28.980 -1.690 0.083 0.659 H301 DMP 55 DMP H302 2H30 H 0 0 N N N -7.751 17.272 29.202 -0.421 -0.271 1.857 H302 DMP 56 DMP H32 H32 H 0 1 N N N -5.701 16.224 27.928 -3.075 2.170 0.952 H32 DMP 57 DMP H33 H33 H 0 1 N N N -3.458 16.735 26.914 -4.272 3.527 2.622 H33 DMP 58 DMP H34 H34 H 0 1 N N N -2.861 19.101 26.304 -3.573 3.472 4.982 H34 DMP 59 DMP H35 H35 H 0 1 N N N -4.484 20.975 26.755 -1.678 2.059 5.673 H35 DMP 60 DMP H36 H36 H 0 1 N N N -6.735 20.457 27.735 -0.485 0.698 4.003 H36 DMP 61 DMP H601 1H60 H 0 0 N N N -12.738 16.574 27.480 -1.251 -1.965 -2.580 H601 DMP 62 DMP H602 2H60 H 0 0 N N N -11.542 15.513 26.908 -0.914 -2.977 -1.155 H602 DMP 63 DMP H62 H62 H 0 1 N N N -14.140 15.977 29.578 -3.418 -1.034 -2.943 H62 DMP 64 DMP H63 H63 H 0 1 N N N -15.312 14.077 30.733 -5.817 -1.051 -2.387 H63 DMP 65 DMP H64 H64 H 0 1 N N N -14.556 11.709 30.341 -6.587 -2.090 -0.292 H64 DMP 66 DMP H65 H65 H 0 1 N N N -12.596 11.239 28.830 -4.959 -3.111 1.246 H65 DMP 67 DMP H66 H66 H 0 1 N N N -11.453 13.128 27.635 -2.561 -3.098 0.688 H66 DMP 68 DMP H701 1H70 H 0 0 N N N -8.863 14.109 30.007 2.200 -2.201 -1.855 H701 DMP 69 DMP H702 2H70 H 0 0 N N N -10.576 13.950 29.967 0.533 -2.528 -2.387 H702 DMP 70 DMP H72 H72 H 0 1 N N N -11.323 13.844 31.982 3.489 -0.398 -2.847 H72 DMP 71 DMP H73 H73 H 0 1 N N N -11.367 14.562 34.360 3.843 1.020 -4.827 H73 DMP 72 DMP H75 H75 H 0 1 N N N -8.528 17.773 33.454 -0.149 0.234 -6.103 H75 DMP 73 DMP H76 H76 H 0 1 N N N -8.497 17.043 31.035 -0.501 -1.187 -4.125 H76 DMP 74 DMP H771 1H77 H 0 0 N N N -9.231 16.025 36.106 1.139 2.038 -7.093 H771 DMP 75 DMP H772 2H77 H 0 0 N N N -9.550 17.634 35.665 2.805 2.366 -6.561 H772 DMP 76 DMP HO4 HO4 H 0 1 N N N -10.754 19.988 27.043 -1.758 2.882 -1.711 HO4 DMP 77 DMP HO5 HO5 H 0 1 N N N -12.363 18.434 29.510 -1.581 1.228 -3.114 HO5 DMP 78 DMP HO27 7HO2 H 0 0 N N N -8.941 18.180 18.958 3.585 -2.168 7.796 HO27 DMP 79 DMP HO77 7HO7 H 0 0 N N N -11.292 16.762 37.013 2.709 1.379 -8.627 HO77 DMP 80 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DMP C1 N2 SING N N 1 DMP C1 N7 SING N N 2 DMP C1 O1 DOUB N N 3 DMP C3 C4 SING N N 4 DMP C3 C30 SING N N 5 DMP C3 N2 SING N N 6 DMP C3 H3 SING N N 7 DMP C4 C5 SING N N 8 DMP C4 O4 SING N N 9 DMP C4 H4 SING N N 10 DMP C5 C6 SING N N 11 DMP C5 O5 SING N N 12 DMP C5 H5 SING N N 13 DMP C6 C60 SING N N 14 DMP C6 N7 SING N N 15 DMP C6 H6 SING N N 16 DMP C20 C21 SING N N 17 DMP C20 N2 SING N N 18 DMP C20 H201 SING N N 19 DMP C20 H202 SING N N 20 DMP C21 C22 DOUB Y N 21 DMP C21 C26 SING Y N 22 DMP C22 C23 SING Y N 23 DMP C22 H22 SING N N 24 DMP C23 C24 DOUB Y N 25 DMP C23 H23 SING N N 26 DMP C24 C25 SING Y N 27 DMP C24 C27 SING N N 28 DMP C25 C26 DOUB Y N 29 DMP C25 H25 SING N N 30 DMP C26 H26 SING N N 31 DMP C27 O27 SING N N 32 DMP C27 H271 SING N N 33 DMP C27 H272 SING N N 34 DMP C30 C31 SING N N 35 DMP C30 H301 SING N N 36 DMP C30 H302 SING N N 37 DMP C31 C32 DOUB Y N 38 DMP C31 C36 SING Y N 39 DMP C32 C33 SING Y N 40 DMP C32 H32 SING N N 41 DMP C33 C34 DOUB Y N 42 DMP C33 H33 SING N N 43 DMP C34 C35 SING Y N 44 DMP C34 H34 SING N N 45 DMP C35 C36 DOUB Y N 46 DMP C35 H35 SING N N 47 DMP C36 H36 SING N N 48 DMP C60 C61 SING N N 49 DMP C60 H601 SING N N 50 DMP C60 H602 SING N N 51 DMP C61 C62 DOUB Y N 52 DMP C61 C66 SING Y N 53 DMP C62 C63 SING Y N 54 DMP C62 H62 SING N N 55 DMP C63 C64 DOUB Y N 56 DMP C63 H63 SING N N 57 DMP C64 C65 SING Y N 58 DMP C64 H64 SING N N 59 DMP C65 C66 DOUB Y N 60 DMP C65 H65 SING N N 61 DMP C66 H66 SING N N 62 DMP C70 C71 SING N N 63 DMP C70 N7 SING N N 64 DMP C70 H701 SING N N 65 DMP C70 H702 SING N N 66 DMP C71 C72 DOUB Y N 67 DMP C71 C76 SING Y N 68 DMP C72 C73 SING Y N 69 DMP C72 H72 SING N N 70 DMP C73 C74 DOUB Y N 71 DMP C73 H73 SING N N 72 DMP C74 C75 SING Y N 73 DMP C74 C77 SING N N 74 DMP C75 C76 DOUB Y N 75 DMP C75 H75 SING N N 76 DMP C76 H76 SING N N 77 DMP C77 O77 SING N N 78 DMP C77 H771 SING N N 79 DMP C77 H772 SING N N 80 DMP O4 HO4 SING N N 81 DMP O5 HO5 SING N N 82 DMP O27 HO27 SING N N 83 DMP O77 HO77 SING N N 84 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DMP SMILES ACDLabs 10.04 "O=C1N(C(C(O)C(O)C(N1Cc2ccc(cc2)CO)Cc3ccccc3)Cc4ccccc4)Cc5ccc(cc5)CO" DMP SMILES_CANONICAL CACTVS 3.341 "OCc1ccc(CN2[C@H](Cc3ccccc3)[C@H](O)[C@@H](O)[C@@H](Cc4ccccc4)N(Cc5ccc(CO)cc5)C2=O)cc1" DMP SMILES CACTVS 3.341 "OCc1ccc(CN2[CH](Cc3ccccc3)[CH](O)[CH](O)[CH](Cc4ccccc4)N(Cc5ccc(CO)cc5)C2=O)cc1" DMP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)C[C@@H]2[C@@H]([C@H]([C@H](N(C(=O)N2Cc3ccc(cc3)CO)Cc4ccc(cc4)CO)Cc5ccccc5)O)O" DMP SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)CC2C(C(C(N(C(=O)N2Cc3ccc(cc3)CO)Cc4ccc(cc4)CO)Cc5ccccc5)O)O" DMP InChI InChI 1.03 "InChI=1S/C35H38N2O5/c38-23-29-15-11-27(12-16-29)21-36-31(19-25-7-3-1-4-8-25)33(40)34(41)32(20-26-9-5-2-6-10-26)37(35(36)42)22-28-13-17-30(24-39)18-14-28/h1-18,31-34,38-41H,19-24H2/t31-,32-,33+,34+/m1/s1" DMP InChIKey InChI 1.03 XCVGQMUMMDXKCY-WZJLIZBTSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DMP "SYSTEMATIC NAME" ACDLabs 10.04 "(4R,5S,6S,7R)-4,7-dibenzyl-5,6-dihydroxy-1,3-bis[4-(hydroxymethyl)benzyl]-1,3-diazepan-2-one" DMP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(4R,5S,6S,7R)-5,6-dihydroxy-1,3-bis[[4-(hydroxymethyl)phenyl]methyl]-4,7-bis(phenylmethyl)-1,3-diazepan-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DMP "Create component" 1999-07-08 RCSB DMP "Modify descriptor" 2011-06-04 RCSB DMP "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id DMP _pdbx_chem_comp_synonyms.name "DMP323(INHIBITOR OF DUPONT MERCK)" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##