data_DN2 # _chem_comp.id DN2 _chem_comp.name "3-({(2S)-2-[({(1S)-1-[({(1S)-1-[(R)-CARBOXY(HYDROXY)METHYL]-3,3-DIFLUOROPROPYL}AMINO)CARBONYL]-3-METHYLBUTYL}AMINO)CARBONYL]-2,3-DIHYDRO-1H-INDOL-2-YL}METHYL)THIOPHENE-2-CARBOXYLIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H31 F2 N3 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "PEPTIDOMIMETIC INHIBITOR" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-07-14 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 567.602 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DN2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1W3C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DN2 N1 N1 N 0 1 N N N 23.451 29.490 -3.548 -0.621 0.100 -2.715 N1 DN2 1 DN2 C2 C2 C 0 1 N N S 22.731 28.141 -3.638 0.164 -1.132 -2.619 C2 DN2 2 DN2 C1 C1 C 0 1 N N N 22.836 27.409 -2.250 0.210 -1.613 -1.192 C1 DN2 3 DN2 O2 O2 O 0 1 N N N 23.849 26.691 -2.081 0.127 -2.798 -0.948 O2 DN2 4 DN2 N3 N3 N 0 1 N N N 21.891 27.571 -1.270 0.344 -0.726 -0.186 N3 DN2 5 DN2 C4 C4 C 0 1 N N S 21.777 26.599 -0.170 0.261 -1.178 1.204 C4 DN2 6 DN2 C5 C5 C 0 1 N N N 20.540 26.876 0.710 1.666 -1.487 1.725 C5 DN2 7 DN2 C6 C6 C 0 1 N N N 19.050 28.708 1.753 3.713 -2.866 1.339 C6 DN2 8 DN2 C7 C7 C 0 1 N N N 21.599 28.756 1.972 1.460 -3.946 1.334 C7 DN2 9 DN2 C8 C8 C 0 1 N N N 20.397 28.355 1.121 2.241 -2.683 0.964 C8 DN2 10 DN2 C9 C9 C 0 1 N N N 21.674 25.174 -0.773 -0.360 -0.096 2.048 C9 DN2 11 DN2 O10 O10 O 0 1 N N N 21.032 24.974 -1.814 -0.701 0.950 1.537 O10 DN2 12 DN2 N11 N11 N 0 1 N N N 22.691 24.339 -0.303 -0.539 -0.290 3.369 N11 DN2 13 DN2 C12 C12 C 0 1 N N S 22.653 22.892 -0.482 -1.144 0.762 4.189 C12 DN2 14 DN2 C13 C13 C 0 1 N N N 23.843 22.194 -1.158 -2.662 0.577 4.217 C13 DN2 15 DN2 C14 C14 C 0 1 N N N 24.381 22.882 -2.398 -3.213 0.661 2.792 C14 DN2 16 DN2 F15 F15 F 0 1 N N N 23.524 22.801 -3.276 -4.601 0.492 2.818 F15 DN2 17 DN2 F16 F16 F 0 1 N N N 24.462 24.083 -2.169 -2.905 1.912 2.246 F16 DN2 18 DN2 C17 C17 C 0 1 N N R 22.105 22.080 0.824 -0.593 0.678 5.614 C17 DN2 19 DN2 C18 C18 C 0 1 N N N 21.715 20.677 0.112 0.901 0.860 5.587 C18 DN2 20 DN2 O19 O19 O 0 1 N N N 20.751 20.742 -0.706 1.431 1.994 5.101 O19 DN2 21 DN2 O20 O20 O 0 1 N N N 22.444 19.716 0.444 1.624 -0.014 6.002 O20 DN2 22 DN2 O21 O21 O 0 1 N N N 20.794 22.640 1.142 -0.908 -0.599 6.172 O21 DN2 23 DN2 C22 C22 C 0 1 N N N 23.601 27.388 -4.707 1.581 -0.904 -3.148 C22 DN2 24 DN2 C23 C23 C 0 1 N N N 21.318 28.420 -4.225 -0.576 -2.151 -3.502 C23 DN2 25 DN2 C24 C24 C 0 1 Y N N 22.544 30.430 -4.059 -1.722 -0.096 -3.549 C24 DN2 26 DN2 C25 C25 C 0 1 Y N N 21.335 29.893 -4.470 -1.763 -1.389 -4.046 C25 DN2 27 DN2 C26 C26 C 0 1 Y N N 22.803 31.782 -4.182 -2.726 0.803 -3.917 C26 DN2 28 DN2 C27 C27 C 0 1 Y N N 20.334 30.688 -5.016 -2.781 -1.782 -4.894 C27 DN2 29 DN2 C28 C28 C 0 1 Y N N 20.569 32.055 -5.132 -3.770 -0.886 -5.254 C28 DN2 30 DN2 C29 C29 C 0 1 Y N N 21.803 32.595 -4.718 -3.739 0.406 -4.763 C29 DN2 31 DN2 C30 C30 C 0 1 Y N N 22.953 26.231 -5.473 2.219 0.236 -2.398 C30 DN2 32 DN2 C31 C31 C 0 1 Y N N 22.109 25.252 -4.836 2.985 0.019 -1.280 C31 DN2 33 DN2 C32 C32 C 0 1 Y N N 21.093 24.785 -5.638 3.539 1.081 -0.638 C32 DN2 34 DN2 S33 S33 S 0 1 Y N N 21.124 25.529 -7.174 3.007 2.435 -1.582 S33 DN2 35 DN2 C34 C34 C 0 1 Y N N 22.478 26.455 -6.770 2.064 1.551 -2.811 C34 DN2 36 DN2 C35 C35 C 0 1 N N N 22.969 27.628 -7.528 1.314 2.077 -3.954 C35 DN2 37 DN2 O36 O36 O 0 1 N N N 23.970 28.199 -6.981 1.279 3.405 -4.183 O36 DN2 38 DN2 O37 O37 O 0 1 N N N 22.389 27.954 -8.594 0.724 1.315 -4.696 O37 DN2 39 DN2 H1 H1 H 0 1 N N N 24.390 29.667 -3.192 -0.406 0.932 -2.264 H1 DN2 40 DN2 H3 H3 H 0 1 N N N 21.261 28.372 -1.303 0.496 0.210 -0.383 H3 DN2 41 DN2 H4 H4 H 0 1 N N N 22.693 26.659 0.463 -0.351 -2.078 1.258 H4 DN2 42 DN2 H5C1 1H5C H 0 0 N N N 20.538 26.215 1.608 1.616 -1.722 2.788 H5C1 DN2 43 DN2 H5C2 2H5C H 0 0 N N N 19.611 26.513 0.211 2.308 -0.618 1.576 H5C2 DN2 44 DN2 H6C1 1H6C H 0 0 N N N 18.947 29.778 2.050 4.123 -3.718 0.797 H6C1 DN2 45 DN2 H6C2 2H6C H 0 0 N N N 18.842 28.041 2.622 4.270 -1.966 1.076 H6C2 DN2 46 DN2 H6C3 3H6C H 0 0 N N N 18.214 28.409 1.078 3.796 -3.043 2.412 H6C3 DN2 47 DN2 H7C1 1H7C H 0 0 N N N 21.496 29.826 2.269 1.569 -4.141 2.401 H7C1 DN2 48 DN2 H7C2 2H7C H 0 0 N N N 22.568 28.550 1.460 0.406 -3.803 1.096 H7C2 DN2 49 DN2 H7C3 3H7C H 0 0 N N N 21.740 28.084 2.850 1.849 -4.792 0.768 H7C3 DN2 50 DN2 H8 H8 H 0 1 N N N 20.467 28.950 0.180 2.159 -2.505 -0.107 H8 DN2 51 DN2 H11 H11 H 0 1 N N N 23.486 24.755 0.181 -0.267 -1.126 3.778 H11 DN2 52 DN2 H12 H12 H 0 1 N N N 21.831 22.755 -1.223 -0.904 1.737 3.764 H12 DN2 53 DN2 H131 1H13 H 0 0 N N N 23.583 21.135 -1.390 -2.902 -0.397 4.642 H131 DN2 54 DN2 H132 2H13 H 0 0 N N N 24.664 22.038 -0.420 -3.112 1.360 4.827 H132 DN2 55 DN2 H14 H14 H 0 1 N N N 25.356 22.452 -2.725 -2.762 -0.121 2.182 H14 DN2 56 DN2 H17 H17 H 0 1 N N N 22.817 22.005 1.679 -1.044 1.461 6.224 H17 DN2 57 DN2 H19 H19 H 0 1 N N N 20.522 19.919 -1.123 2.390 2.111 5.083 H19 DN2 58 DN2 H21 H21 H 0 1 N N N 20.475 22.167 1.902 -0.492 -1.262 5.604 H21 DN2 59 DN2 H221 1H22 H 0 0 N N N 24.541 27.028 -4.226 2.172 -1.809 -3.005 H221 DN2 60 DN2 H222 2H22 H 0 0 N N N 24.006 28.128 -5.436 1.538 -0.662 -4.210 H222 DN2 61 DN2 H231 1H23 H 0 0 N N N 20.473 28.065 -3.589 0.065 -2.487 -4.316 H231 DN2 62 DN2 H232 2H23 H 0 0 N N N 21.056 27.804 -5.117 -0.910 -2.999 -2.904 H232 DN2 63 DN2 H26 H26 H 0 1 N N N 23.771 32.206 -3.866 -2.708 1.814 -3.537 H26 DN2 64 DN2 H27 H27 H 0 1 N N N 19.379 30.247 -5.348 -2.804 -2.792 -5.277 H27 DN2 65 DN2 H28 H28 H 0 1 N N N 19.790 32.715 -5.548 -4.565 -1.194 -5.916 H28 DN2 66 DN2 H29 H29 H 0 1 N N N 21.982 33.679 -4.819 -4.511 1.107 -5.043 H29 DN2 67 DN2 H31 H31 H 0 1 N N N 22.263 24.908 -3.799 3.144 -0.984 -0.914 H31 DN2 68 DN2 H32 H32 H 0 1 N N N 20.354 24.027 -5.328 4.160 1.082 0.244 H32 DN2 69 DN2 H36 H36 H 0 1 N N N 24.285 28.951 -7.467 0.784 3.753 -4.937 H36 DN2 70 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DN2 N1 C2 SING N N 1 DN2 N1 C24 SING N N 2 DN2 N1 H1 SING N N 3 DN2 C2 C1 SING N N 4 DN2 C2 C22 SING N N 5 DN2 C2 C23 SING N N 6 DN2 C1 O2 DOUB N N 7 DN2 C1 N3 SING N N 8 DN2 N3 C4 SING N N 9 DN2 N3 H3 SING N N 10 DN2 C4 C5 SING N N 11 DN2 C4 C9 SING N N 12 DN2 C4 H4 SING N N 13 DN2 C5 C8 SING N N 14 DN2 C5 H5C1 SING N N 15 DN2 C5 H5C2 SING N N 16 DN2 C6 C8 SING N N 17 DN2 C6 H6C1 SING N N 18 DN2 C6 H6C2 SING N N 19 DN2 C6 H6C3 SING N N 20 DN2 C7 C8 SING N N 21 DN2 C7 H7C1 SING N N 22 DN2 C7 H7C2 SING N N 23 DN2 C7 H7C3 SING N N 24 DN2 C8 H8 SING N N 25 DN2 C9 O10 DOUB N N 26 DN2 C9 N11 SING N N 27 DN2 N11 C12 SING N N 28 DN2 N11 H11 SING N N 29 DN2 C12 C13 SING N N 30 DN2 C12 C17 SING N N 31 DN2 C12 H12 SING N N 32 DN2 C13 C14 SING N N 33 DN2 C13 H131 SING N N 34 DN2 C13 H132 SING N N 35 DN2 C14 F15 SING N N 36 DN2 C14 F16 SING N N 37 DN2 C14 H14 SING N N 38 DN2 C17 C18 SING N N 39 DN2 C17 O21 SING N N 40 DN2 C17 H17 SING N N 41 DN2 C18 O19 SING N N 42 DN2 C18 O20 DOUB N N 43 DN2 O19 H19 SING N N 44 DN2 O21 H21 SING N N 45 DN2 C22 C30 SING N N 46 DN2 C22 H221 SING N N 47 DN2 C22 H222 SING N N 48 DN2 C23 C25 SING N N 49 DN2 C23 H231 SING N N 50 DN2 C23 H232 SING N N 51 DN2 C24 C25 DOUB Y N 52 DN2 C24 C26 SING Y N 53 DN2 C25 C27 SING Y N 54 DN2 C26 C29 DOUB Y N 55 DN2 C26 H26 SING N N 56 DN2 C27 C28 DOUB Y N 57 DN2 C27 H27 SING N N 58 DN2 C28 C29 SING Y N 59 DN2 C28 H28 SING N N 60 DN2 C29 H29 SING N N 61 DN2 C30 C31 SING Y N 62 DN2 C30 C34 DOUB Y N 63 DN2 C31 C32 DOUB Y N 64 DN2 C31 H31 SING N N 65 DN2 C32 S33 SING Y N 66 DN2 C32 H32 SING N N 67 DN2 S33 C34 SING Y N 68 DN2 C34 C35 SING N N 69 DN2 C35 O36 SING N N 70 DN2 C35 O37 DOUB N N 71 DN2 O36 H36 SING N N 72 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DN2 SMILES ACDLabs 10.04 "O=C(O)C(O)C(NC(=O)C(NC(=O)C2(Nc1ccccc1C2)Cc3c(scc3)C(=O)O)CC(C)C)CC(F)F" DN2 SMILES_CANONICAL CACTVS 3.341 "CC(C)C[C@H](NC(=O)[C@]1(Cc2ccccc2N1)Cc3ccsc3C(O)=O)C(=O)N[C@@H](CC(F)F)[C@@H](O)C(O)=O" DN2 SMILES CACTVS 3.341 "CC(C)C[CH](NC(=O)[C]1(Cc2ccccc2N1)Cc3ccsc3C(O)=O)C(=O)N[CH](CC(F)F)[CH](O)C(O)=O" DN2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)C[C@@H](C(=O)N[C@@H](CC(F)F)[C@H](C(=O)O)O)NC(=O)[C@]1(Cc2ccccc2N1)Cc3ccsc3C(=O)O" DN2 SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)CC(C(=O)NC(CC(F)F)C(C(=O)O)O)NC(=O)C1(Cc2ccccc2N1)Cc3ccsc3C(=O)O" DN2 InChI InChI 1.03 "InChI=1S/C26H31F2N3O7S/c1-13(2)9-18(22(33)29-17(10-19(27)28)20(32)23(34)35)30-25(38)26(11-14-5-3-4-6-16(14)31-26)12-15-7-8-39-21(15)24(36)37/h3-8,13,17-20,31-32H,9-12H2,1-2H3,(H,29,33)(H,30,38)(H,34,35)(H,36,37)/t17-,18-,20+,26-/m0/s1" DN2 InChIKey InChI 1.03 BEFPIHVRQQQFFB-QUPVEMFASA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DN2 "SYSTEMATIC NAME" ACDLabs 10.04 "3-{[N-({(2S)-2-[(2-carboxythiophen-3-yl)methyl]-2,3-dihydro-1H-indol-2-yl}carbonyl)-L-leucyl]amino}-3,4,5-trideoxy-5,5-difluoro-L-threo-pentonic acid" DN2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "3-[[(2S)-2-[[(2S)-1-[[(2R,3S)-5,5-difluoro-1,2-dihydroxy-1-oxo-pentan-3-yl]amino]-4-methyl-1-oxo-pentan-2-yl]carbamoyl]-1,3-dihydroindol-2-yl]methyl]thiophene-2-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DN2 "Create component" 2004-07-14 EBI DN2 "Modify descriptor" 2011-06-04 RCSB DN2 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id DN2 _pdbx_chem_comp_synonyms.name "PEPTIDOMIMETIC INHIBITOR" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##