data_DNN # _chem_comp.id DNN _chem_comp.name "7,8-DIAMINO-NONANOIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H20 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 188.267 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DNN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1DAH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DNN C1 C1 C 0 1 N N N -6.842 28.178 7.140 -0.023 0.066 -4.601 C1 DNN 1 DNN O1 O1 O 0 1 N N N -7.536 27.474 6.409 -1.085 0.640 -4.548 O1 DNN 2 DNN O2 O2 O 0 1 N N N -6.071 29.021 6.670 0.526 -0.218 -5.792 O2 DNN 3 DNN C2 C2 C 0 1 N N N -6.847 27.956 8.656 0.682 -0.331 -3.331 C2 DNN 4 DNN C3 C3 C 0 1 N N N -5.783 26.906 9.011 -0.151 0.106 -2.125 C3 DNN 5 DNN C4 C4 C 0 1 N N N -5.618 26.637 10.496 0.565 -0.296 -0.835 C4 DNN 6 DNN C5 C5 C 0 1 N N N -4.558 25.556 10.687 -0.268 0.141 0.369 C5 DNN 7 DNN C6 C6 C 0 1 N N N -4.371 25.265 12.165 0.448 -0.262 1.659 C6 DNN 8 DNN C7 C7 C 0 1 N N R -3.402 24.136 12.587 -0.385 0.175 2.865 C7 DNN 9 DNN C8 C8 C 0 1 N N S -3.823 22.771 11.969 0.331 -0.227 4.155 C8 DNN 10 DNN C9 C9 C 0 1 N N N -5.109 22.260 12.593 -0.503 0.210 5.360 C9 DNN 11 DNN N7 N7 N 0 1 N N N -3.491 24.084 14.035 -1.702 -0.474 2.812 N7 DNN 12 DNN N8 N8 N 0 1 N N N -2.802 21.750 12.142 1.647 0.423 4.207 N8 DNN 13 DNN HO2 HO2 H 0 1 N N N -5.534 29.565 7.234 0.073 0.037 -6.608 HO2 DNN 14 DNN H21 1H2 H 0 1 N N N -6.712 28.905 9.224 1.658 0.151 -3.292 H21 DNN 15 DNN H22 2H2 H 0 1 N N N -7.857 27.684 9.042 0.810 -1.413 -3.310 H22 DNN 16 DNN H31 1H3 H 0 1 N N N -5.985 25.953 8.467 -1.128 -0.375 -2.165 H31 DNN 17 DNN H32 2H3 H 0 1 N N N -4.802 27.183 8.558 -0.280 1.189 -2.146 H32 DNN 18 DNN H41 1H4 H 0 1 N N N -5.390 27.563 11.073 1.541 0.186 -0.796 H41 DNN 19 DNN H42 2H4 H 0 1 N N N -6.583 26.378 10.991 0.693 -1.378 -0.814 H42 DNN 20 DNN H51 1H5 H 0 1 N N N -4.793 24.633 10.106 -1.245 -0.341 0.330 H51 DNN 21 DNN H52 2H5 H 0 1 N N N -3.596 25.821 10.189 -0.397 1.223 0.348 H52 DNN 22 DNN H61 1H6 H 0 1 N N N -4.073 26.206 12.682 1.424 0.220 1.698 H61 DNN 23 DNN H62 2H6 H 0 1 N N N -5.369 25.072 12.622 0.576 -1.344 1.680 H62 DNN 24 DNN H7 H7 H 0 1 N N N -2.363 24.334 12.232 -0.514 1.258 2.844 H7 DNN 25 DNN H8 H8 H 0 1 N N N -3.970 22.960 10.880 0.459 -1.309 4.176 H8 DNN 26 DNN H91 1H9 H 0 1 N N N -5.410 21.282 12.150 0.007 -0.077 6.279 H91 DNN 27 DNN H92 2H9 H 0 1 N N N -5.030 22.200 13.703 -0.631 1.292 5.339 H92 DNN 28 DNN H93 3H9 H 0 1 N N N -5.927 23.013 12.519 -1.479 -0.272 5.321 H93 DNN 29 DNN HN71 1HN7 H 0 0 N N N -2.851 23.339 14.313 -1.534 -1.469 2.834 HN71 DNN 30 DNN HN72 2HN7 H 0 0 N N N -4.441 23.965 14.386 -2.175 -0.241 3.672 HN72 DNN 31 DNN HN81 1HN8 H 0 0 N N N -3.077 20.855 11.737 1.479 1.417 4.186 HN81 DNN 32 DNN HN82 2HN8 H 0 0 N N N -2.546 21.646 13.124 2.037 0.214 5.114 HN82 DNN 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DNN C1 O1 DOUB N N 1 DNN C1 O2 SING N N 2 DNN C1 C2 SING N N 3 DNN O2 HO2 SING N N 4 DNN C2 C3 SING N N 5 DNN C2 H21 SING N N 6 DNN C2 H22 SING N N 7 DNN C3 C4 SING N N 8 DNN C3 H31 SING N N 9 DNN C3 H32 SING N N 10 DNN C4 C5 SING N N 11 DNN C4 H41 SING N N 12 DNN C4 H42 SING N N 13 DNN C5 C6 SING N N 14 DNN C5 H51 SING N N 15 DNN C5 H52 SING N N 16 DNN C6 C7 SING N N 17 DNN C6 H61 SING N N 18 DNN C6 H62 SING N N 19 DNN C7 C8 SING N N 20 DNN C7 N7 SING N N 21 DNN C7 H7 SING N N 22 DNN C8 C9 SING N N 23 DNN C8 N8 SING N N 24 DNN C8 H8 SING N N 25 DNN C9 H91 SING N N 26 DNN C9 H92 SING N N 27 DNN C9 H93 SING N N 28 DNN N7 HN71 SING N N 29 DNN N7 HN72 SING N N 30 DNN N8 HN81 SING N N 31 DNN N8 HN82 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DNN SMILES ACDLabs 10.04 "O=C(O)CCCCCC(N)C(N)C" DNN SMILES_CANONICAL CACTVS 3.341 "C[C@H](N)[C@H](N)CCCCCC(O)=O" DNN SMILES CACTVS 3.341 "C[CH](N)[CH](N)CCCCCC(O)=O" DNN SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H]([C@@H](CCCCCC(=O)O)N)N" DNN SMILES "OpenEye OEToolkits" 1.5.0 "CC(C(CCCCCC(=O)O)N)N" DNN InChI InChI 1.03 "InChI=1S/C9H20N2O2/c1-7(10)8(11)5-3-2-4-6-9(12)13/h7-8H,2-6,10-11H2,1H3,(H,12,13)/t7-,8+/m0/s1" DNN InChIKey InChI 1.03 KCEGBPIYGIWCDH-JGVFFNPUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DNN "SYSTEMATIC NAME" ACDLabs 10.04 "(7R,8S)-7,8-diaminononanoic acid" DNN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(7R,8S)-7,8-diaminononanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DNN "Create component" 1999-07-08 RCSB DNN "Modify descriptor" 2011-06-04 RCSB #