data_DOF # _chem_comp.id DOF _chem_comp.name "(S)-2-(4-NITROBENZYL)-1,4,7,10-TETRAAZACYCLODODECANE-N,N',N'',N'''-TETRAACETATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H33 N5 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-12-12 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 539.536 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DOF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1NC4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DOF C1 C1 C 0 1 N N S -11.933 14.594 35.990 -1.075 2.622 5.254 C1 DOF 1 DOF C2 C2 C 0 1 N N N -12.552 13.432 36.764 -0.163 3.292 4.195 C2 DOF 2 DOF C3 C3 C 0 1 N N N -12.434 11.779 38.480 -0.967 3.302 1.882 C3 DOF 3 DOF C4 C4 C 0 1 N N N -11.386 10.748 38.282 -1.870 2.048 1.879 C4 DOF 4 DOF C5 C5 C 0 1 N N N -9.191 10.217 37.576 -0.389 0.290 0.986 C5 DOF 5 DOF C6 C6 C 0 1 N N N -8.700 10.895 36.344 -0.578 -1.045 1.749 C6 DOF 6 DOF C7 C7 C 0 1 N N N -8.536 12.999 35.129 -0.198 -0.281 4.050 C7 DOF 7 DOF C8 C8 C 0 1 N N N -9.967 13.479 34.949 -0.932 0.158 5.335 C8 DOF 8 DOF C9 C9 C 0 1 N N N -9.865 15.886 35.768 0.890 1.493 6.288 C9 DOF 9 DOF C10 C10 C 0 1 N N N -8.480 16.132 36.345 1.185 0.405 7.275 C10 DOF 10 DOF C11 C11 C 0 1 N N N -12.636 14.101 39.113 -0.410 5.367 2.984 C11 DOF 11 DOF C12 C12 C 0 1 N N N -12.007 15.500 39.108 -1.269 6.097 1.997 C12 DOF 12 DOF C13 C13 C 0 1 N N N -9.510 10.773 39.869 -1.697 1.676 -0.517 C13 DOF 13 DOF C14 C14 C 0 1 N N N -10.170 11.585 41.023 -1.646 0.593 -1.550 C14 DOF 14 DOF C15 C15 C 0 1 N N N -6.767 12.523 36.664 -1.436 -2.315 3.606 C15 DOF 15 DOF C16 C16 C 0 1 N N N -6.318 12.371 38.136 -2.465 -2.916 2.698 C16 DOF 16 DOF C17 C17 C 0 1 N N N -12.692 14.728 34.582 -1.486 3.652 6.321 C17 DOF 17 DOF C18 C18 C 0 1 Y N N -14.218 14.937 34.723 -2.753 3.243 7.013 C18 DOF 18 DOF C19 C19 C 0 1 Y N N -15.152 14.144 33.982 -3.979 3.655 6.503 C19 DOF 19 DOF C20 C20 C 0 1 Y N N -16.560 14.340 34.141 -5.157 3.274 7.146 C20 DOF 20 DOF C21 C21 C 0 1 Y N N -17.102 15.338 35.051 -5.101 2.484 8.294 C21 DOF 21 DOF C22 C22 C 0 1 Y N N -16.133 16.123 35.780 -3.867 2.075 8.800 C22 DOF 22 DOF C23 C23 C 0 1 Y N N -14.737 15.931 35.622 -2.689 2.455 8.157 C23 DOF 23 DOF N1 N1 N 0 1 N N N -10.426 14.497 36.003 -0.522 1.435 5.940 N1 DOF 24 DOF N2 N2 N 0 1 N N N -12.019 13.158 38.112 -0.961 4.022 3.180 N2 DOF 25 DOF N3 N3 N 0 1 N N N -9.961 11.105 38.487 -1.633 1.061 0.809 N3 DOF 26 DOF N4 N4 N 0 1 N N N -8.266 12.343 36.431 -1.111 -0.970 3.119 N4 DOF 27 DOF N5 N5 N 1 1 N N N -18.476 15.532 35.218 -6.300 2.097 8.948 N5 DOF 28 DOF O1 O1 O 0 1 N N N -8.058 15.365 37.200 0.404 -0.071 8.085 O1 DOF 29 DOF O2 O2 O 0 1 N N N -7.825 17.097 35.916 2.476 0.003 7.148 O2 DOF 30 DOF O3 O3 O 0 1 N N N -10.736 15.588 39.061 -2.470 5.948 1.829 O3 DOF 31 DOF O4 O4 O 0 1 N N N -12.745 16.499 39.142 -0.514 6.978 1.290 O4 DOF 32 DOF O5 O5 O 0 1 N N N -10.454 12.734 40.777 -2.078 -0.544 -1.433 O5 DOF 33 DOF O6 O6 O 0 1 N N N -10.318 10.974 42.159 -1.038 1.054 -2.674 O6 DOF 34 DOF O7 O7 O 0 1 N N N -7.183 12.484 39.030 -3.308 -2.310 2.053 O7 DOF 35 DOF O8 O8 O 0 1 N N N -5.120 12.136 38.354 -2.336 -4.268 2.684 O8 DOF 36 DOF O9 O9 O 0 1 N N N -19.257 14.825 34.563 -6.228 1.386 9.980 O9 DOF 37 DOF O10 O10 O -1 1 N N N -18.858 16.403 36.017 -7.400 2.475 8.477 O10 DOF 38 DOF HC1 HC1 H 0 1 N N N -12.093 15.586 36.474 -2.025 2.337 4.789 HC1 DOF 39 DOF HC21 1HC2 H 0 0 N N N -12.495 12.505 36.148 0.509 3.985 4.722 HC21 DOF 40 DOF HC22 2HC2 H 0 0 N N N -13.656 13.574 36.824 0.510 2.580 3.712 HC22 DOF 41 DOF HC31 1HC3 H 0 0 N N N -12.810 11.754 39.529 0.062 3.064 1.585 HC31 DOF 42 DOF HC32 2HC3 H 0 0 N N N -13.365 11.496 37.936 -1.355 3.978 1.108 HC32 DOF 43 DOF HC41 1HC4 H 0 0 N N N -11.501 10.316 37.261 -1.827 1.529 2.833 HC41 DOF 44 DOF HC42 2HC4 H 0 0 N N N -11.628 9.868 38.922 -2.913 2.385 1.804 HC42 DOF 45 DOF HC51 1HC5 H 0 0 N N N -8.346 9.734 38.121 0.413 0.890 1.428 HC51 DOF 46 DOF HC52 2HC5 H 0 0 N N N -9.787 9.312 37.314 -0.010 0.002 -0.005 HC52 DOF 47 DOF HC61 1HC6 H 0 0 N N N -9.474 10.798 35.547 -1.265 -1.658 1.149 HC61 DOF 48 DOF HC62 2HC6 H 0 0 N N N -7.866 10.295 35.911 0.382 -1.578 1.754 HC62 DOF 49 DOF HC71 1HC7 H 0 0 N N N -7.821 13.838 34.962 0.220 0.594 3.559 HC71 DOF 50 DOF HC72 2HC7 H 0 0 N N N -8.243 12.328 34.288 0.661 -0.915 4.303 HC72 DOF 51 DOF HC81 1HC8 H 0 0 N N N -10.668 12.612 34.912 -2.017 0.189 5.166 HC81 DOF 52 DOF HC82 2HC8 H 0 0 N N N -10.116 13.887 33.922 -0.801 -0.633 6.087 HC82 DOF 53 DOF HC91 1HC9 H 0 0 N N N -9.874 16.124 34.679 1.105 2.466 6.738 HC91 DOF 54 DOF HC92 2HC9 H 0 0 N N N -10.579 16.656 36.143 1.487 1.347 5.384 HC92 DOF 55 DOF H111 1H11 H 0 0 N N N -13.739 14.165 38.966 0.607 5.281 2.593 H111 DOF 56 DOF H112 2H11 H 0 0 N N N -12.610 13.661 40.137 -0.411 5.896 3.941 H112 DOF 57 DOF H131 1H13 H 0 0 N N N -9.639 9.681 40.055 -0.840 2.343 -0.640 H131 DOF 58 DOF H132 2H13 H 0 0 N N N -8.400 10.860 39.934 -2.633 2.233 -0.607 H132 DOF 59 DOF H151 1H15 H 0 0 N N N -6.188 11.830 36.010 -1.840 -2.238 4.619 H151 DOF 60 DOF H152 2H15 H 0 0 N N N -6.427 13.503 36.255 -0.531 -2.927 3.598 H152 DOF 61 DOF H171 1H17 H 0 0 N N N -12.472 13.851 33.930 -1.609 4.626 5.845 H171 DOF 62 DOF H172 2H17 H 0 0 N N N -12.238 15.537 33.964 -0.674 3.756 7.044 H172 DOF 63 DOF H19 H19 H 0 1 N N N -14.783 13.375 33.282 -4.032 4.270 5.609 H19 DOF 64 DOF H20 H20 H 0 1 N N N -17.243 13.708 33.549 -6.112 3.600 6.741 H20 DOF 65 DOF H22 H22 H 0 1 N N N -16.473 16.900 36.485 -3.810 1.459 9.694 H22 DOF 66 DOF H23 H23 H 0 1 N N N -14.046 16.563 36.206 -1.732 2.131 8.558 H23 DOF 67 DOF HO1 HO1 H 0 1 N N N -10.693 11.572 42.794 -0.989 0.366 -3.372 HO1 DOF 68 DOF HO2 HO2 H 0 1 N N N -6.981 17.127 36.352 2.700 -0.711 7.782 HO2 DOF 69 DOF HO3 HO3 H 0 1 N N N -12.214 17.286 39.127 -1.050 7.473 0.634 HO3 DOF 70 DOF HO4 HO4 H 0 1 N N N -4.977 12.059 39.290 -2.998 -4.692 2.096 HO4 DOF 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DOF C1 C2 SING N N 1 DOF C1 C17 SING N N 2 DOF C1 N1 SING N N 3 DOF C1 HC1 SING N N 4 DOF C2 N2 SING N N 5 DOF C2 HC21 SING N N 6 DOF C2 HC22 SING N N 7 DOF C3 C4 SING N N 8 DOF C3 N2 SING N N 9 DOF C3 HC31 SING N N 10 DOF C3 HC32 SING N N 11 DOF C4 N3 SING N N 12 DOF C4 HC41 SING N N 13 DOF C4 HC42 SING N N 14 DOF C5 C6 SING N N 15 DOF C5 N3 SING N N 16 DOF C5 HC51 SING N N 17 DOF C5 HC52 SING N N 18 DOF C6 N4 SING N N 19 DOF C6 HC61 SING N N 20 DOF C6 HC62 SING N N 21 DOF C7 C8 SING N N 22 DOF C7 N4 SING N N 23 DOF C7 HC71 SING N N 24 DOF C7 HC72 SING N N 25 DOF C8 N1 SING N N 26 DOF C8 HC81 SING N N 27 DOF C8 HC82 SING N N 28 DOF C9 C10 SING N N 29 DOF C9 N1 SING N N 30 DOF C9 HC91 SING N N 31 DOF C9 HC92 SING N N 32 DOF C10 O1 DOUB N N 33 DOF C10 O2 SING N N 34 DOF C11 C12 SING N N 35 DOF C11 N2 SING N N 36 DOF C11 H111 SING N N 37 DOF C11 H112 SING N N 38 DOF C12 O3 DOUB N N 39 DOF C12 O4 SING N N 40 DOF C13 C14 SING N N 41 DOF C13 N3 SING N N 42 DOF C13 H131 SING N N 43 DOF C13 H132 SING N N 44 DOF C14 O5 DOUB N N 45 DOF C14 O6 SING N N 46 DOF C15 C16 SING N N 47 DOF C15 N4 SING N N 48 DOF C15 H151 SING N N 49 DOF C15 H152 SING N N 50 DOF C16 O7 DOUB N N 51 DOF C16 O8 SING N N 52 DOF C17 C18 SING N N 53 DOF C17 H171 SING N N 54 DOF C17 H172 SING N N 55 DOF C18 C19 DOUB Y N 56 DOF C18 C23 SING Y N 57 DOF C19 C20 SING Y N 58 DOF C19 H19 SING N N 59 DOF C20 C21 DOUB Y N 60 DOF C20 H20 SING N N 61 DOF C21 C22 SING Y N 62 DOF C21 N5 SING N N 63 DOF C22 C23 DOUB Y N 64 DOF C22 H22 SING N N 65 DOF C23 H23 SING N N 66 DOF N5 O9 DOUB N N 67 DOF N5 O10 SING N N 68 DOF HO1 O6 SING N N 69 DOF HO2 O2 SING N N 70 DOF HO3 O4 SING N N 71 DOF HO4 O8 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DOF SMILES ACDLabs 10.04 "[O-][N+](=O)c1ccc(cc1)CC2N(CCN(CCN(CCN(CC(=O)O)C2)CC(=O)O)CC(=O)O)CC(=O)O" DOF SMILES_CANONICAL CACTVS 3.341 "OC(=O)CN1CCN(CCN(CC(O)=O)[C@H](CN(CC1)CC(O)=O)Cc2ccc(cc2)[N+]([O-])=O)CC(O)=O" DOF SMILES CACTVS 3.341 "OC(=O)CN1CCN(CCN(CC(O)=O)[CH](CN(CC1)CC(O)=O)Cc2ccc(cc2)[N+]([O-])=O)CC(O)=O" DOF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C[C@H]2C[N@](CC[N@](CC[N@](CC[N@]2CC(=O)O)CC(=O)O)CC(=O)O)CC(=O)O)[N+](=O)[O-]" DOF SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1CC2CN(CCN(CCN(CCN2CC(=O)O)CC(=O)O)CC(=O)O)CC(=O)O)[N+](=O)[O-]" DOF InChI InChI 1.03 "InChI=1S/C23H33N5O10/c29-20(30)13-24-5-6-25(14-21(31)32)9-10-27(16-23(35)36)19(12-26(8-7-24)15-22(33)34)11-17-1-3-18(4-2-17)28(37)38/h1-4,19H,5-16H2,(H,29,30)(H,31,32)(H,33,34)(H,35,36)/t19-/m0/s1" DOF InChIKey InChI 1.03 SQWOBSHRAUJBNP-IBGZPJMESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DOF "SYSTEMATIC NAME" ACDLabs 10.04 ;2,2',2'',2'''-[(2S)-2-(4-nitrobenzyl)-1,4,7,10-tetraazacyclododecane-1,4,7,10-tetrayl]tetraacetic acid ; DOF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[(1S,2S,4S,7S,10R)-4,7,10-tris(carboxymethyl)-2-[(4-nitrophenyl)methyl]-1,4,7,10-tetrazacyclododec-1-yl]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DOF "Create component" 2002-12-12 RCSB DOF "Modify descriptor" 2011-06-04 RCSB #