data_DOI # _chem_comp.id DOI _chem_comp.name "9-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-6-(PHOSPHONOOXY)-9H-PURINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N4 O10 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2'-DEOXY-IMP" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-03-16 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 412.186 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DOI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 2DGN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DOI PA PA P 0 1 N N N 60.758 66.545 39.999 -5.895 -1.207 0.171 PA DOI 1 DOI O1A O1A O 0 1 N N N 59.347 65.979 40.069 -5.376 -2.172 -0.824 O1A DOI 2 DOI O2A O2A O 0 1 N N N 60.891 67.868 40.733 -6.505 -2.008 1.428 O2A DOI 3 DOI O3A O3A O 0 1 N N N 61.789 65.519 40.432 -7.048 -0.309 -0.503 O3A DOI 4 DOI "O5'" O5* O 0 1 N N N 61.029 66.863 38.419 -4.697 -0.256 0.672 "O5'" DOI 5 DOI P6 P6 P 0 1 N N N 63.328 57.471 38.197 5.396 -1.081 -0.574 P6 DOI 6 DOI O16 O16 O 0 1 N N N 61.956 56.968 37.744 6.528 -2.222 -0.665 O16 DOI 7 DOI O26 O26 O 0 1 N N N 63.668 57.007 39.610 4.195 -1.435 -1.585 O26 DOI 8 DOI O36 O36 O 0 1 N N N 64.439 57.180 37.188 5.983 0.227 -0.944 O36 DOI 9 DOI "C5'" C5* C 0 1 N N N 62.258 67.473 37.965 -4.122 0.334 -0.496 "C5'" DOI 10 DOI "C4'" C4* C 0 1 N N R 62.809 66.716 36.776 -2.971 1.256 -0.088 "C4'" DOI 11 DOI "O4'" O4* O 0 1 N N N 63.191 65.386 37.186 -1.885 0.485 0.476 "O4'" DOI 12 DOI "C1'" C1* C 0 1 N N R 62.755 64.450 36.230 -0.718 1.328 0.362 "C1'" DOI 13 DOI N9 N9 N 0 1 Y N N 62.379 63.238 36.950 0.504 0.523 0.432 N9 DOI 14 DOI C4 C4 C 0 1 Y N N 62.552 61.964 36.469 1.760 0.979 0.744 C4 DOI 15 DOI N3 N3 N 0 1 Y N N 62.656 61.585 35.183 2.276 2.159 1.070 N3 DOI 16 DOI C2 C2 C 0 1 Y N N 62.834 60.266 35.096 3.561 2.280 1.328 C2 DOI 17 DOI N1 N1 N 0 1 Y N N 62.917 59.358 36.074 4.392 1.255 1.284 N1 DOI 18 DOI C6 C6 C 0 1 Y N N 62.816 59.773 37.357 3.967 0.037 0.973 C6 DOI 19 DOI O6 O6 O 0 1 N N N 63.218 59.084 38.294 4.828 -1.008 0.930 O6 DOI 20 DOI C5 C5 C 0 1 Y N N 62.609 61.144 37.584 2.605 -0.144 0.689 C5 DOI 21 DOI N7 N7 N 0 1 Y N N 62.454 61.885 38.747 1.836 -1.205 0.345 N7 DOI 22 DOI C8 C8 C 0 1 Y N N 62.320 63.115 38.319 0.603 -0.816 0.194 C8 DOI 23 DOI "C2'" C2* C 0 1 N N N 61.561 65.074 35.513 -0.845 1.993 -1.026 "C2'" DOI 24 DOI "C3'" C3* C 0 1 N N S 61.874 66.565 35.577 -2.360 1.945 -1.328 "C3'" DOI 25 DOI "O3'" O3* O 0 1 N N N 62.482 67.033 34.378 -2.883 3.267 -1.475 "O3'" DOI 26 DOI H2A H2A H 0 1 N N N 60.919 67.710 41.669 -7.218 -2.565 1.085 H2A DOI 27 DOI H3A H3A H 0 1 N N N 62.351 65.305 39.697 -7.358 0.305 0.177 H3A DOI 28 DOI H26 H26 H 0 1 N N N 63.739 56.060 39.624 3.841 -2.292 -1.310 H26 DOI 29 DOI H36 H36 H 0 1 N N N 64.067 57.120 36.316 ? ? ? H36 DOI 30 DOI "H5'1" 1H5* H 0 0 N N N 62.995 67.446 38.781 -4.882 0.913 -1.022 "H5'1" DOI 31 DOI "H5'2" 2H5* H 0 0 N N N 62.059 68.514 37.671 -3.745 -0.451 -1.151 "H5'2" DOI 32 DOI "H4'" H4* H 0 1 N N N 63.654 67.334 36.437 -3.318 2.002 0.626 "H4'" DOI 33 DOI "H1'" H1* H 0 1 N N N 63.526 64.193 35.488 -0.718 2.084 1.147 "H1'" DOI 34 DOI H2 H2 H 0 1 N N N 62.924 59.876 34.093 3.949 3.254 1.586 H2 DOI 35 DOI H8 H8 H 0 1 N N N 62.176 63.957 38.980 -0.221 -1.459 -0.079 H8 DOI 36 DOI "H2'1" 1H2* H 0 0 N N N 60.595 64.813 35.971 -0.289 1.426 -1.773 "H2'1" DOI 37 DOI "H2'2" 2H2* H 0 0 N N N 61.476 64.719 34.475 -0.495 3.024 -0.989 "H2'2" DOI 38 DOI "H3'" H3* H 0 1 N N N 60.960 67.168 35.686 -2.552 1.357 -2.226 "H3'" DOI 39 DOI "HO3'" *HO3 H 0 0 N N N 61.819 67.137 33.706 -2.444 3.657 -2.244 "HO3'" DOI 40 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DOI PA O1A DOUB N N 1 DOI PA O2A SING N N 2 DOI PA O3A SING N N 3 DOI PA "O5'" SING N N 4 DOI O2A H2A SING N N 5 DOI O3A H3A SING N N 6 DOI "O5'" "C5'" SING N N 7 DOI P6 O16 DOUB N N 8 DOI P6 O26 SING N N 9 DOI P6 O36 SING N N 10 DOI P6 O6 SING N N 11 DOI O26 H26 SING N N 12 DOI O36 H36 SING N N 13 DOI "C5'" "C4'" SING N N 14 DOI "C5'" "H5'1" SING N N 15 DOI "C5'" "H5'2" SING N N 16 DOI "C4'" "O4'" SING N N 17 DOI "C4'" "C3'" SING N N 18 DOI "C4'" "H4'" SING N N 19 DOI "O4'" "C1'" SING N N 20 DOI "C1'" N9 SING N N 21 DOI "C1'" "C2'" SING N N 22 DOI "C1'" "H1'" SING N N 23 DOI N9 C4 SING Y N 24 DOI N9 C8 SING Y N 25 DOI C4 N3 DOUB Y N 26 DOI C4 C5 SING Y N 27 DOI N3 C2 SING Y N 28 DOI C2 N1 DOUB Y N 29 DOI C2 H2 SING N N 30 DOI N1 C6 SING Y N 31 DOI C6 O6 SING N N 32 DOI C6 C5 DOUB Y N 33 DOI C5 N7 SING Y N 34 DOI N7 C8 DOUB Y N 35 DOI C8 H8 SING N N 36 DOI "C2'" "C3'" SING N N 37 DOI "C2'" "H2'1" SING N N 38 DOI "C2'" "H2'2" SING N N 39 DOI "C3'" "O3'" SING N N 40 DOI "C3'" "H3'" SING N N 41 DOI "O3'" "HO3'" SING N N 42 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DOI SMILES ACDLabs 10.04 "O=P(O)(O)Oc3ncnc1c3ncn1C2OC(C(O)C2)COP(=O)(O)O" DOI SMILES_CANONICAL CACTVS 3.341 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3c(O[P](O)(O)=O)ncnc23" DOI SMILES CACTVS 3.341 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2cnc3c(O[P](O)(O)=O)ncnc23" DOI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(c(n1)OP(=O)(O)O)ncn2[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O" DOI SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(c(n1)OP(=O)(O)O)ncn2C3CC(C(O3)COP(=O)(O)O)O" DOI InChI InChI 1.03 "InChI=1S/C10H14N4O10P2/c15-5-1-7(23-6(5)2-22-25(16,17)18)14-4-13-8-9(14)11-3-12-10(8)24-26(19,20)21/h3-7,15H,1-2H2,(H2,16,17,18)(H2,19,20,21)/t5-,6+,7+/m0/s1" DOI InChIKey InChI 1.03 GEECATYOCBMMIR-RRKCRQDMSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DOI "SYSTEMATIC NAME" ACDLabs 10.04 "9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6-(phosphonooxy)-9H-purine" DOI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-(6-phosphonooxypurin-9-yl)oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DOI "Create component" 2006-03-16 RCSB DOI "Modify descriptor" 2011-06-04 RCSB DOI "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id DOI _pdbx_chem_comp_synonyms.name "2'-DEOXY-IMP" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##