data_DOU # _chem_comp.id DOU _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-[[oxidanyl(phosphonooxy)phosphoryl]methyl]phosphinic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H18 N5 O12 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-18 _chem_comp.pdbx_modified_date 2024-07-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 505.208 _chem_comp.one_letter_code ? _chem_comp.three_letter_code DOU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PU4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal DOU PG P1 P 0 1 N N N N N N 15.283 58.291 48.578 -7.026 -1.560 0.531 PG DOU 1 DOU O1G O1 O 0 1 N N N N N N 15.560 59.134 49.782 -7.920 -0.445 0.146 O1G DOU 2 DOU O2G O2 O 0 1 N N N N N N 14.226 58.966 47.684 -7.495 -2.159 1.950 O2G DOU 3 DOU O3G O3 O 0 1 N N N N N N 14.855 56.792 48.845 -7.097 -2.716 -0.588 O3G DOU 4 DOU PB P2 P 0 1 N N N N N N 17.878 57.577 48.440 -4.625 0.012 -0.210 PB DOU 5 DOU O1B O4 O 0 1 N N N N N N 17.468 56.277 49.101 -4.512 -0.474 -1.603 O1B DOU 6 DOU O2B O5 O 0 1 N N N N N N 19.004 57.345 47.383 -5.328 1.461 -0.202 O2B DOU 7 DOU O3B O6 O 0 1 N N N N N N 16.599 58.178 47.642 -5.514 -1.020 0.649 O3B DOU 8 DOU PA P3 P 0 1 N N N N N N 19.740 58.118 50.818 -1.956 1.308 -0.446 PA DOU 9 DOU O1A O7 O 0 1 N N N N N N 20.417 59.221 51.616 -1.843 0.822 -1.839 O1A DOU 10 DOU O2A O8 O 0 1 N N N N N N 19.155 57.116 51.869 -2.658 2.757 -0.438 O2A DOU 11 DOU C3A C1 C 0 1 N N N N N N 18.469 58.789 49.680 -2.962 0.140 0.526 C3A DOU 12 DOU "O5'" O9 O 0 1 N N N N N N 20.710 57.213 49.972 -0.487 1.421 0.204 "O5'" DOU 13 DOU "C5'" C2 C 0 1 N N N N N N 22.089 57.575 50.218 0.570 2.179 -0.387 "C5'" DOU 14 DOU "C4'" C3 C 0 1 N N S N N N 22.915 56.883 49.163 1.823 2.073 0.484 "C4'" DOU 15 DOU "O4'" O10 O 0 1 N N N N N N 23.071 55.485 49.506 2.316 0.723 0.469 "O4'" DOU 16 DOU "C3'" C4 C 0 1 N N S N N N 22.265 56.858 47.784 2.936 2.973 -0.088 "C3'" DOU 17 DOU "O3'" O11 O 0 1 N N N N N N 22.429 58.085 47.078 3.325 3.958 0.872 "O3'" DOU 18 DOU "C2'" C5 C 0 1 N N R N N N 22.948 55.648 47.143 4.105 1.998 -0.369 "C2'" DOU 19 DOU "O2'" O12 O 0 1 N N N N N N 24.260 55.990 46.697 5.356 2.579 0.007 "O2'" DOU 20 DOU "C1'" C6 C 0 1 N N R N N N 22.998 54.679 48.334 3.755 0.799 0.549 "C1'" DOU 21 DOU N9 N1 N 0 1 Y N N N N N 21.839 53.769 48.435 4.365 -0.433 0.042 N9 DOU 22 DOU C8 C7 C 0 1 Y N N N N N 20.515 54.130 48.392 3.799 -1.314 -0.831 C8 DOU 23 DOU N7 N2 N 0 1 Y N N N N N 19.688 53.118 48.482 4.619 -2.297 -1.066 N7 DOU 24 DOU C5 C8 C 0 1 Y N N N N N 20.505 52.007 48.584 5.760 -2.110 -0.361 C5 DOU 25 DOU C6 C9 C 0 1 Y N N N N N 20.264 50.637 48.711 6.963 -2.823 -0.221 C6 DOU 26 DOU N6 N3 N 0 1 N N N N N N 19.022 50.105 48.755 7.167 -4.009 -0.905 N6 DOU 27 DOU N1 N4 N 0 1 Y N N N N N 21.314 49.790 48.796 7.901 -2.331 0.583 N1 DOU 28 DOU C2 C10 C 0 1 Y N N N N N 22.547 50.312 48.749 7.715 -1.200 1.238 C2 DOU 29 DOU N3 N5 N 0 1 Y N N N N N 22.908 51.590 48.630 6.605 -0.499 1.138 N3 DOU 30 DOU C4 C11 C 0 1 Y N N N N N 21.857 52.403 48.551 5.613 -0.910 0.354 C4 DOU 31 DOU H1 H1 H 0 1 N N N N N N 13.958 59.789 48.076 -8.398 -2.503 1.953 H1 DOU 32 DOU H3 H2 H 0 1 N N N N N N 14.833 56.630 49.781 -6.535 -3.480 -0.401 H3 DOU 33 DOU H4 H3 H 0 1 N N N N N N 19.224 56.421 47.352 -5.435 1.842 0.680 H4 DOU 34 DOU H5 H4 H 0 1 N N N N N N 19.355 57.423 52.745 -2.766 3.138 0.444 H5 DOU 35 DOU H3A2 H5 H 0 0 N N N N N N 18.900 59.649 49.147 -3.046 0.498 1.552 H3A2 DOU 36 DOU H3A1 H6 H 0 0 N N N N N N 17.608 59.122 50.278 -2.487 -0.841 0.521 H3A1 DOU 37 DOU "H5'1" H7 H 0 0 N N N N N N 22.214 58.665 50.142 0.785 1.788 -1.382 "H5'1" DOU 38 DOU "H5'2" H8 H 0 0 N N N N N N 22.396 57.240 51.220 0.268 3.224 -0.465 "H5'2" DOU 39 DOU "H4'" H9 H 0 1 N N N N N N 23.899 57.370 49.091 1.590 2.372 1.506 "H4'" DOU 40 DOU "H3'" H10 H 0 1 N N N N N N 21.195 56.633 47.904 2.605 3.450 -1.010 "H3'" DOU 41 DOU "HO3'" H11 H 0 0 N N N N N N 22.009 58.021 46.228 4.024 4.552 0.564 "HO3'" DOU 42 DOU "H2'" H12 H 0 1 N N N N N N 22.328 55.235 46.334 4.118 1.697 -1.416 "H2'" DOU 43 DOU "HO2'" H13 H 0 0 N N N N N N 24.669 55.229 46.302 5.576 3.386 -0.478 "HO2'" DOU 44 DOU "H1'" H14 H 0 1 N N N N N N 23.914 54.077 48.245 4.074 0.993 1.573 "H1'" DOU 45 DOU H8 H15 H 0 1 N N N N N N 20.186 55.154 48.293 2.814 -1.211 -1.264 H8 DOU 46 DOU HN62 H16 H 0 0 N N N N N N 19.088 49.112 48.849 6.476 -4.357 -1.488 HN62 DOU 47 DOU HN61 H17 H 0 0 N N N N N N 18.526 50.482 49.537 8.002 -4.491 -0.800 HN61 DOU 48 DOU H2 H18 H 0 1 N N N N N N 23.358 49.602 48.817 8.503 -0.837 1.881 H2 DOU 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DOU PG O1G DOUB N N 1 DOU PG O2G SING N N 2 DOU PG O3G SING N N 3 DOU PG O3B SING N N 4 DOU PB O1B DOUB N N 5 DOU PB O2B SING N N 6 DOU PB O3B SING N N 7 DOU PB C3A SING N N 8 DOU PA O1A DOUB N N 9 DOU PA O2A SING N N 10 DOU PA C3A SING N N 11 DOU PA "O5'" SING N N 12 DOU "O5'" "C5'" SING N N 13 DOU "C5'" "C4'" SING N N 14 DOU "C4'" "O4'" SING N N 15 DOU "C4'" "C3'" SING N N 16 DOU "O4'" "C1'" SING N N 17 DOU "C3'" "O3'" SING N N 18 DOU "C3'" "C2'" SING N N 19 DOU "C2'" "O2'" SING N N 20 DOU "C2'" "C1'" SING N N 21 DOU "C1'" N9 SING N N 22 DOU N9 C8 SING Y N 23 DOU N9 C4 SING Y N 24 DOU C8 N7 DOUB Y N 25 DOU N7 C5 SING Y N 26 DOU C5 C6 DOUB Y N 27 DOU C5 C4 SING Y N 28 DOU C6 N6 SING N N 29 DOU C6 N1 SING Y N 30 DOU N1 C2 DOUB Y N 31 DOU C2 N3 SING Y N 32 DOU N3 C4 DOUB Y N 33 DOU O2G H1 SING N N 34 DOU O3G H3 SING N N 35 DOU O2B H4 SING N N 36 DOU O2A H5 SING N N 37 DOU C3A H3A2 SING N N 38 DOU C3A H3A1 SING N N 39 DOU "C5'" "H5'1" SING N N 40 DOU "C5'" "H5'2" SING N N 41 DOU "C4'" "H4'" SING N N 42 DOU "C3'" "H3'" SING N N 43 DOU "O3'" "HO3'" SING N N 44 DOU "C2'" "H2'" SING N N 45 DOU "O2'" "HO2'" SING N N 46 DOU "C1'" "H1'" SING N N 47 DOU C8 H8 SING N N 48 DOU N6 HN62 SING N N 49 DOU N6 HN61 SING N N 50 DOU C2 H2 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor DOU InChI InChI 1.06 "InChI=1S/C11H18N5O12P3/c12-9-6-10(14-2-13-9)16(3-15-6)11-8(18)7(17)5(27-11)1-26-29(19,20)4-30(21,22)28-31(23,24)25/h2-3,5,7-8,11,17-18H,1,4H2,(H,19,20)(H,21,22)(H2,12,13,14)(H2,23,24,25)" DOU InChIKey InChI 1.06 CAWZRIXWFRFUQB-UHFFFAOYSA-N DOU SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O" DOU SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O" DOU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)O)O)N" DOU SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)O)O)N" # _pdbx_chem_comp_identifier.comp_id DOU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-[[oxidanyl(phosphonooxy)phosphoryl]methyl]phosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site DOU "Create component" 2023-07-18 PDBE DOU "Initial release" 2024-07-24 RCSB #